Wall clock time and date at job start Mon Mar 30 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47102 * 2 1 4 4 C 1.52993 * 110.53644 * 57.16821 * 3 2 1 5 5 C 1.51582 * 110.89615 * 294.34791 * 3 2 1 6 6 O 1.21236 * 127.16148 * 61.57311 * 5 3 2 7 7 N 1.34772 * 105.68488 * 241.65684 * 5 3 2 8 8 C 1.33792 * 111.64131 * 359.65239 * 7 5 3 9 9 O 1.21536 * 123.77049 * 180.23189 * 8 7 5 10 10 N 1.34530 * 112.45897 * 0.23433 * 8 7 5 11 11 C 1.46501 * 126.68903 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47398 * 90.02620 * 11 10 8 13 13 O 1.21298 * 119.99312 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00270 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99784 * 179.97438 * 14 12 11 16 16 H 1.07993 * 120.00233 * 0.02562 * 15 14 12 17 17 C 1.38945 * 119.99803 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00037 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00241 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46813 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47283 * 120.00237 * 19 17 15 22 22 H 1.48505 * 109.47170 * 240.00391 * 19 17 15 23 23 H 1.08993 * 109.47375 * 60.00027 * 1 2 3 24 24 H 1.08999 * 109.47472 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47029 * 300.00110 * 1 2 3 26 26 H 1.08995 * 109.46588 * 239.99443 * 2 1 3 27 27 H 1.08998 * 109.46686 * 119.99963 * 2 1 3 28 28 H 1.08995 * 109.47342 * 182.82684 * 4 3 2 29 29 H 1.09001 * 109.47692 * 302.83000 * 4 3 2 30 30 H 1.09009 * 109.47191 * 62.82958 * 4 3 2 31 31 H 0.97001 * 124.18199 * 179.97438 * 7 5 3 32 32 H 1.08997 * 109.46978 * 210.02768 * 11 10 8 33 33 H 1.09003 * 109.46975 * 330.02614 * 11 10 8 34 34 H 0.97000 * 119.99805 * 0.02562 * 14 12 11 35 35 H 0.97005 * 120.00072 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4866 2.2074 1.2038 5 6 1.6698 2.1468 -1.2902 6 8 0.5541 2.3626 -1.7126 7 7 2.8390 2.4817 -1.8709 8 6 3.8853 2.0975 -1.1310 9 8 5.0430 2.2923 -1.4455 10 7 3.5128 1.4714 0.0000 11 6 4.3991 0.9246 1.0304 12 6 4.6786 1.9830 2.0660 13 8 4.1862 3.0859 1.9541 14 7 5.4756 1.7042 3.1165 15 6 5.7302 2.6674 4.0584 16 1 5.2919 3.6493 3.9588 17 6 6.5514 2.3798 5.1416 18 7 7.0844 1.1848 5.2631 19 14 6.8979 3.6919 6.4254 20 1 6.1836 4.9417 6.0609 21 1 6.4267 3.2221 7.7529 22 1 8.3584 3.9546 6.4830 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8194 3.2444 1.1598 29 1 0.3972 2.1744 1.1859 30 1 1.8488 1.7484 2.1238 31 1 2.9127 2.9481 -2.7182 32 1 3.9193 0.0690 1.5056 33 1 5.3362 0.6077 0.5727 34 1 5.8696 0.8223 3.2057 35 1 7.6575 0.9839 6.0196 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070508422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:24 Heat of formation + Delta-G solvation = -81.171506 kcal Electronic energy + Delta-G solvation = -21405.853458 eV Core-core repulsion = 18018.945001 eV Total energy + Delta-G solvation = -3386.908457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.40065 -38.72621 -38.12604 -36.59812 -34.97884 -34.04832 -33.03019 -31.33047 -29.46019 -27.90881 -25.28618 -24.68289 -23.36520 -21.58408 -20.15959 -19.32656 -18.17519 -17.84492 -16.77452 -16.32397 -15.86918 -15.68971 -15.18512 -14.91022 -14.59156 -14.11272 -13.92217 -13.71418 -13.53402 -13.20653 -12.61373 -12.38709 -12.11090 -11.90815 -11.83825 -11.61186 -11.37957 -11.12578 -11.00963 -10.58398 -10.39041 -10.30028 -10.25468 -9.91480 -9.58744 -9.25565 -8.23541 -8.05123 -6.48793 -3.89838 1.67733 2.35233 3.06169 3.11911 3.20868 3.24161 3.31121 3.76131 4.03210 4.13002 4.50365 4.70735 4.88954 5.03381 5.14152 5.24564 5.31341 5.47017 5.64225 5.70772 5.79933 5.87785 5.90857 5.98151 6.02261 6.13896 6.20351 6.44898 6.56501 7.21521 7.43335 7.49127 7.96015 8.28555 8.51462 9.09876 9.43341 9.93128 10.68389 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.005070 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.757601 B = 5521.190968 C = 5795.959786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 C 0.123 3.877 4 C -0.139 4.139 5 C 0.538 3.462 6 O -0.474 6.474 7 N -0.680 5.680 8 C 0.706 3.294 9 O -0.542 6.542 10 N -0.588 5.588 11 C 0.138 3.862 12 C 0.420 3.580 13 O -0.581 6.581 14 N -0.556 5.556 15 C -0.299 4.299 16 H 0.104 0.896 17 C 0.025 3.975 18 N -0.898 5.898 19 Si 0.930 3.070 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.281 1.281 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.428 0.572 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.393 0.607 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.073 -5.372 -8.816 14.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.152 4.152 3 C 0.034 3.966 4 C -0.197 4.197 5 C 0.324 3.676 6 O -0.344 6.344 7 N -0.350 5.350 8 C 0.406 3.594 9 O -0.416 6.416 10 N -0.325 5.325 11 C 0.013 3.987 12 C 0.204 3.796 13 O -0.466 6.466 14 N -0.193 5.193 15 C -0.429 4.429 16 H 0.122 0.878 17 C -0.178 4.178 18 N -0.539 5.539 19 Si 0.757 3.243 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.207 1.207 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.269 0.731 32 H 0.119 0.881 33 H 0.123 0.877 34 H 0.227 0.773 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.162 -4.592 -8.932 14.287 hybrid contribution 0.697 0.360 0.397 0.880 sum -9.464 -4.232 -8.535 13.429 Atomic orbital electron populations 1.21928 0.93812 1.02302 1.03684 1.21680 0.97459 0.92313 1.03770 1.21535 0.81565 0.97992 0.95493 1.21988 1.00580 1.01665 0.95431 1.20780 0.83993 0.77200 0.85608 1.90762 1.21483 1.53501 1.68639 1.44336 1.08291 1.57028 1.25332 1.15767 0.84277 0.78456 0.80851 1.91002 1.16706 1.59816 1.74067 1.47140 1.05394 1.59700 1.20295 1.21096 0.94142 0.95672 0.87839 1.20201 0.84984 0.89853 0.84566 1.90531 1.54835 1.23766 1.77441 1.41829 1.42063 1.14806 1.20556 1.19736 1.27291 0.95083 1.00749 0.87835 1.25268 0.96501 0.97313 0.98670 1.69611 1.32627 1.20172 1.31516 0.85799 0.78213 0.80511 0.79820 1.19239 1.20702 1.20676 0.91128 0.92073 0.91630 0.91122 0.89623 0.90424 0.90749 0.90196 0.73063 0.88070 0.87656 0.77344 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.30 37.16 0.35 -1.14 16 2 C -0.11 -1.17 5.23 -26.73 -0.14 -1.31 16 3 C 0.12 1.66 0.86 -132.10 -0.11 1.54 16 4 C -0.14 -1.99 7.20 37.15 0.27 -1.72 16 5 C 0.54 7.43 7.28 -10.55 -0.08 7.35 16 6 O -0.47 -6.97 16.18 5.60 0.09 -6.88 16 7 N -0.68 -9.36 5.70 -15.79 -0.09 -9.45 16 8 C 0.71 12.06 8.68 -88.02 -0.76 11.30 16 9 O -0.54 -11.13 17.71 5.33 0.09 -11.03 16 10 N -0.59 -9.33 2.00 -166.46 -0.33 -9.66 16 11 C 0.14 2.24 6.33 -5.20 -0.03 2.21 16 12 C 0.42 9.24 7.42 -10.99 -0.08 9.15 16 13 O -0.58 -14.73 14.26 5.54 0.08 -14.65 16 14 N -0.56 -13.29 5.29 -10.97 -0.06 -13.34 16 15 C -0.30 -8.02 9.68 -14.93 -0.14 -8.17 16 16 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 17 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 18 N -0.90 -23.61 13.05 55.50 0.72 -22.88 16 19 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 23 H 0.07 0.75 6.19 -51.93 -0.32 0.43 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.60 6.40 -51.93 -0.33 0.27 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 0.80 7.42 -51.93 -0.39 0.42 16 28 H 0.08 1.34 7.53 -51.93 -0.39 0.94 16 29 H 0.07 0.89 6.33 -51.93 -0.33 0.56 16 30 H 0.08 1.21 7.87 -51.92 -0.41 0.80 16 31 H 0.43 4.76 8.96 -40.82 -0.37 4.39 16 32 H 0.10 1.28 7.35 -51.93 -0.38 0.90 16 33 H 0.11 1.64 8.03 -51.93 -0.42 1.22 16 34 H 0.39 8.89 7.90 -40.82 -0.32 8.57 16 35 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 298.28 15.07 4.50 4.50 Total: -1.00 -32.47 298.28 -4.87 -37.34 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -4.01 Total: 10.77 kcal Atomic # 6 Polarization: 20.59 SS G_CDS: -0.84 Total: 19.76 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.24 Total: -55.34 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: 0.26 Total: -32.56 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.47 -4.87 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070508422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.833 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds