Wall clock time and date at job start Mon Mar 30 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47102 * 2 1 4 4 C 1.52993 * 110.53644 * 57.16821 * 3 2 1 5 5 C 1.51582 * 110.89615 * 294.34791 * 3 2 1 6 6 O 1.21236 * 127.16148 * 61.57311 * 5 3 2 7 7 N 1.34772 * 105.68488 * 241.65684 * 5 3 2 8 8 C 1.33792 * 111.64131 * 359.65239 * 7 5 3 9 9 O 1.21536 * 123.77049 * 180.23189 * 8 7 5 10 10 N 1.34530 * 112.45897 * 0.23433 * 8 7 5 11 11 C 1.46501 * 126.68903 * 179.97438 * 10 8 7 12 12 C 1.50696 * 109.47398 * 90.02620 * 11 10 8 13 13 O 1.21298 * 119.99312 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00270 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99784 * 179.97438 * 14 12 11 16 16 H 1.07993 * 120.00233 * 0.02562 * 15 14 12 17 17 C 1.38945 * 119.99803 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00037 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00241 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46813 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47283 * 120.00237 * 19 17 15 22 22 H 1.48505 * 109.47170 * 240.00391 * 19 17 15 23 23 H 1.08993 * 109.47375 * 60.00027 * 1 2 3 24 24 H 1.08999 * 109.47472 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47029 * 300.00110 * 1 2 3 26 26 H 1.08995 * 109.46588 * 239.99443 * 2 1 3 27 27 H 1.08998 * 109.46686 * 119.99963 * 2 1 3 28 28 H 1.08995 * 109.47342 * 182.82684 * 4 3 2 29 29 H 1.09001 * 109.47692 * 302.83000 * 4 3 2 30 30 H 1.09009 * 109.47191 * 62.82958 * 4 3 2 31 31 H 0.97001 * 124.18199 * 179.97438 * 7 5 3 32 32 H 1.08997 * 109.46978 * 210.02768 * 11 10 8 33 33 H 1.09003 * 109.46975 * 330.02614 * 11 10 8 34 34 H 0.97000 * 119.99805 * 0.02562 * 14 12 11 35 35 H 0.97005 * 120.00072 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4866 2.2074 1.2038 5 6 1.6698 2.1468 -1.2902 6 8 0.5541 2.3626 -1.7126 7 7 2.8390 2.4817 -1.8709 8 6 3.8853 2.0975 -1.1310 9 8 5.0430 2.2923 -1.4455 10 7 3.5128 1.4714 0.0000 11 6 4.3991 0.9246 1.0304 12 6 4.6786 1.9830 2.0660 13 8 4.1862 3.0859 1.9541 14 7 5.4756 1.7042 3.1165 15 6 5.7302 2.6674 4.0584 16 1 5.2919 3.6493 3.9588 17 6 6.5514 2.3798 5.1416 18 7 7.0844 1.1848 5.2631 19 14 6.8979 3.6919 6.4254 20 1 6.1836 4.9417 6.0609 21 1 6.4267 3.2221 7.7529 22 1 8.3584 3.9546 6.4830 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8194 3.2444 1.1598 29 1 0.3972 2.1744 1.1859 30 1 1.8488 1.7484 2.1238 31 1 2.9127 2.9481 -2.7182 32 1 3.9193 0.0690 1.5056 33 1 5.3362 0.6077 0.5727 34 1 5.8696 0.8223 3.2057 35 1 7.6575 0.9839 6.0196 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070508422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:23 Heat of formation + Delta-G solvation = -105.941936 kcal Electronic energy + Delta-G solvation = -21406.927584 eV Core-core repulsion = 18018.945001 eV Total energy + Delta-G solvation = -3387.982583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.61397 -40.19118 -39.70062 -37.86359 -36.24452 -35.87645 -34.24426 -33.24974 -30.54316 -29.31881 -26.71459 -26.20141 -24.35812 -22.98659 -21.29578 -20.95878 -19.93582 -19.20159 -18.17744 -17.59368 -17.36552 -16.92139 -16.67035 -16.32322 -16.02581 -15.54044 -15.49412 -15.34019 -14.62849 -14.33632 -14.12557 -13.58665 -13.51206 -13.26164 -12.99081 -12.89318 -12.83463 -12.46721 -12.39875 -12.12552 -11.92472 -11.88985 -11.50609 -11.48668 -11.04280 -10.78120 -9.99578 -9.84522 -8.45724 -5.93608 0.49077 1.12204 1.36557 1.43455 1.56164 1.90612 1.92262 2.03087 2.31740 2.88528 3.20562 3.23258 3.50808 3.70156 3.95413 4.29594 4.34130 4.38519 4.42170 4.57210 4.61544 4.80619 4.87586 4.99940 5.07969 5.09519 5.25295 5.26397 5.43361 5.48903 5.95715 5.99486 6.28439 6.59533 6.99977 7.13999 7.55425 8.09933 8.71174 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.005070 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.757601 B = 5521.190968 C = 5795.959786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C 0.121 3.879 4 C -0.132 4.132 5 C 0.542 3.458 6 O -0.479 6.479 7 N -0.670 5.670 8 C 0.702 3.298 9 O -0.582 6.582 10 N -0.589 5.589 11 C 0.146 3.854 12 C 0.420 3.580 13 O -0.618 6.618 14 N -0.566 5.566 15 C -0.329 4.329 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.988 3.012 20 H -0.276 1.276 21 H -0.269 1.269 22 H -0.274 1.274 23 H 0.056 0.944 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.041 0.959 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.438 0.562 32 H 0.148 0.852 33 H 0.117 0.883 34 H 0.399 0.601 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 -6.772 -8.725 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C 0.033 3.967 4 C -0.190 4.190 5 C 0.329 3.671 6 O -0.349 6.349 7 N -0.340 5.340 8 C 0.403 3.597 9 O -0.459 6.459 10 N -0.325 5.325 11 C 0.021 3.979 12 C 0.206 3.794 13 O -0.504 6.504 14 N -0.203 5.203 15 C -0.458 4.458 16 H 0.095 0.905 17 C -0.209 4.209 18 N -0.557 5.557 19 Si 0.812 3.188 20 H -0.201 1.201 21 H -0.194 1.194 22 H -0.200 1.200 23 H 0.075 0.925 24 H 0.101 0.899 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.282 0.718 32 H 0.165 0.835 33 H 0.135 0.865 34 H 0.233 0.767 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.061 -6.015 -8.857 15.394 hybrid contribution 0.897 0.827 0.313 1.259 sum -10.163 -5.188 -8.545 14.256 Atomic orbital electron populations 1.21910 0.92895 1.03549 1.03049 1.21749 0.98095 0.89701 1.05163 1.21786 0.80043 1.00147 0.94697 1.21905 1.02115 0.99468 0.95490 1.20814 0.83707 0.76925 0.85690 1.90771 1.21558 1.53701 1.68906 1.44187 1.07584 1.56664 1.25575 1.15973 0.84185 0.78206 0.81372 1.90972 1.18403 1.61385 1.75138 1.47260 1.06549 1.59082 1.19595 1.21122 0.95680 0.94633 0.86474 1.21243 0.83028 0.90534 0.84561 1.90517 1.55738 1.25907 1.78256 1.41853 1.42953 1.14592 1.20938 1.19622 1.28672 0.94996 1.02549 0.90515 1.25940 0.95893 0.99195 0.99865 1.69658 1.32769 1.21110 1.32158 0.84941 0.78070 0.77869 0.77885 1.20104 1.19420 1.19982 0.92459 0.89940 0.91515 0.89984 0.87981 0.93952 0.88310 0.90978 0.71776 0.83450 0.86486 0.76678 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.30 71.98 0.67 -1.75 16 2 C -0.11 -1.88 5.23 30.60 0.16 -1.72 16 3 C 0.12 3.04 0.86 2.98 0.00 3.04 16 4 C -0.13 -3.64 7.20 71.98 0.52 -3.13 16 5 C 0.54 14.17 7.28 87.94 0.64 14.81 16 6 O -0.48 -13.30 16.18 -2.89 -0.05 -13.35 16 7 N -0.67 -17.83 5.70 -441.11 -2.52 -20.35 16 8 C 0.70 23.52 8.68 179.44 1.56 25.08 16 9 O -0.58 -23.90 17.71 -3.83 -0.07 -23.97 16 10 N -0.59 -17.84 2.00 -798.98 -1.60 -19.43 16 11 C 0.15 4.48 6.33 85.63 0.54 5.02 16 12 C 0.42 18.47 7.42 87.66 0.65 19.12 16 13 O -0.62 -31.94 14.26 -3.08 -0.04 -31.99 16 14 N -0.57 -27.18 5.29 -306.99 -1.62 -28.80 16 15 C -0.33 -17.94 9.68 84.04 0.81 -17.13 16 16 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 17 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 18 N -0.92 -47.62 13.05 21.66 0.28 -47.34 16 19 Si 0.99 42.06 29.55 68.60 2.03 44.08 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 23 H 0.06 1.06 6.19 -2.39 -0.01 1.04 16 24 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.07 1.01 6.40 -2.39 -0.02 1.00 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.10 1.47 7.42 -2.39 -0.02 1.45 16 28 H 0.04 1.46 7.53 -2.39 -0.02 1.45 16 29 H 0.10 2.19 6.33 -2.39 -0.02 2.18 16 30 H 0.07 2.10 7.87 -2.38 -0.02 2.08 16 31 H 0.44 9.43 8.96 -92.71 -0.83 8.60 16 32 H 0.15 3.19 7.35 -2.39 -0.02 3.18 16 33 H 0.12 3.43 8.03 -2.39 -0.02 3.41 16 34 H 0.40 17.92 7.90 -92.71 -0.73 17.19 16 35 H 0.28 13.54 8.31 -92.70 -0.77 12.77 16 Total: -1.00 -70.86 298.28 2.03 -68.83 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -0.41 Total: 28.94 kcal Atomic # 6 Polarization: 37.35 SS G_CDS: 6.02 Total: 43.37 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -5.45 Total: -115.92 kcal Atomic # 8 Polarization: -69.14 SS G_CDS: -0.16 Total: -69.30 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -70.86 2.03 -68.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070508422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.113 kcal (2) G-P(sol) polarization free energy of solvation -70.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds