Wall clock time and date at job start Mon Mar 30 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46910 * 2 1 4 4 C 1.52997 * 110.53763 * 300.70100 * 3 2 1 5 5 C 1.51581 * 110.59822 * 63.53751 * 3 2 1 6 6 O 1.21240 * 127.15551 * 298.71015 * 5 3 2 7 7 N 1.34764 * 105.69068 * 118.67667 * 5 3 2 8 8 C 1.33798 * 111.64240 * 359.97438 * 7 5 3 9 9 O 1.21529 * 123.77220 * 180.02562 * 8 7 5 10 10 N 1.34533 * 112.45502 * 0.02562 * 8 7 5 11 11 C 1.46497 * 126.68851 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47053 * 269.97299 * 11 10 8 13 13 O 1.21291 * 119.99669 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00121 * 179.97438 * 12 11 10 15 15 C 1.37089 * 119.99853 * 179.97438 * 14 12 11 16 16 H 1.08005 * 120.00413 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00126 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00475 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99676 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46796 * 90.00215 * 19 17 15 21 21 H 1.48498 * 109.47080 * 209.99978 * 19 17 15 22 22 H 1.48501 * 109.47114 * 330.00160 * 19 17 15 23 23 H 1.09000 * 109.46904 * 299.99877 * 1 2 3 24 24 H 1.09004 * 109.46885 * 59.99442 * 1 2 3 25 25 H 1.08994 * 109.47240 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47010 * 240.00856 * 2 1 3 27 27 H 1.08993 * 109.47291 * 120.00376 * 2 1 3 28 28 H 1.09002 * 109.47153 * 181.37658 * 4 3 2 29 29 H 1.09001 * 109.46832 * 61.37849 * 4 3 2 30 30 H 1.09004 * 109.47261 * 301.37830 * 4 3 2 31 31 H 0.97000 * 124.17939 * 180.02562 * 7 5 3 32 32 H 1.09001 * 109.47089 * 29.96808 * 11 10 8 33 33 H 1.08996 * 109.47520 * 149.97235 * 11 10 8 34 34 H 0.96998 * 119.99916 * 0.02562 * 14 12 11 35 35 H 0.97000 * 119.99776 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5292 2.1924 -1.2319 5 6 1.6216 2.1561 1.2702 6 8 0.4908 2.3683 1.6524 7 7 2.7680 2.5050 1.8868 8 6 3.8416 2.1146 1.1902 9 8 4.9866 2.3154 1.5446 10 7 3.5118 1.4749 0.0535 11 6 4.4362 0.9183 -0.9374 12 6 4.7516 1.9656 -1.9741 13 8 4.2529 3.0682 -1.8934 14 7 5.5879 1.6769 -2.9909 15 6 5.8744 2.6294 -3.9343 16 1 5.4303 3.6114 -3.8625 17 6 6.7361 2.3317 -4.9829 18 7 7.0104 3.2446 -5.8874 19 14 7.5047 0.6336 -5.1067 20 1 6.6223 -0.2518 -5.9084 21 1 8.8316 0.7377 -5.7652 22 1 7.6711 0.0651 -3.7449 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.9221 3.2092 -1.2272 29 1 0.4398 2.2238 -1.2124 30 1 1.8618 1.6786 -2.1339 31 1 2.8098 2.9797 2.7316 32 1 5.3564 0.6086 -0.4421 33 1 3.9756 0.0564 -1.4201 34 1 5.9864 0.7949 -3.0556 35 1 7.6122 3.0368 -6.6192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070508423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:27 Heat of formation + Delta-G solvation = -73.967097 kcal Electronic energy + Delta-G solvation = -21455.725355 eV Core-core repulsion = 18069.129304 eV Total energy + Delta-G solvation = -3386.596050 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.46474 -38.82520 -38.28413 -36.66014 -35.03907 -34.10293 -33.11240 -31.75579 -29.56777 -28.07135 -25.30932 -24.59806 -23.41792 -21.54513 -20.23543 -19.48362 -18.54803 -18.00605 -16.81110 -16.37342 -15.91855 -15.73829 -15.31570 -14.96005 -14.79196 -14.20765 -14.07722 -13.59104 -13.34997 -13.21191 -12.75341 -12.47939 -12.24249 -12.18858 -12.00152 -11.91557 -11.46379 -11.20832 -11.08380 -10.66244 -10.64783 -10.30230 -10.05896 -9.95926 -9.64480 -9.34614 -8.36425 -8.26409 -6.37697 -3.89776 1.62712 2.27478 2.98125 3.00073 3.01956 3.11618 3.14849 3.58351 3.97052 4.04412 4.43674 4.54146 4.67224 4.95686 5.09472 5.18697 5.25414 5.37778 5.53817 5.63494 5.72502 5.74983 5.82473 5.86219 5.91246 6.01326 6.16291 6.41964 6.45520 7.14080 7.37910 7.48264 8.04277 8.21784 8.50331 8.86727 9.33091 9.69604 10.74986 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.005370 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.270320 B = 5212.504174 C = 5469.469603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.114 4.114 3 C 0.123 3.877 4 C -0.141 4.141 5 C 0.538 3.462 6 O -0.472 6.472 7 N -0.680 5.680 8 C 0.707 3.293 9 O -0.541 6.541 10 N -0.590 5.590 11 C 0.136 3.864 12 C 0.428 3.572 13 O -0.563 6.563 14 N -0.583 5.583 15 C -0.306 4.306 16 H 0.120 0.880 17 C 0.043 3.957 18 N -0.878 5.878 19 Si 0.879 3.121 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.268 1.268 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.428 0.572 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.371 0.629 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.970 -10.344 10.800 17.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.152 4.152 3 C 0.034 3.966 4 C -0.199 4.199 5 C 0.324 3.676 6 O -0.342 6.342 7 N -0.349 5.349 8 C 0.407 3.593 9 O -0.415 6.415 10 N -0.327 5.327 11 C 0.010 3.990 12 C 0.213 3.787 13 O -0.445 6.445 14 N -0.222 5.222 15 C -0.434 4.434 16 H 0.137 0.863 17 C -0.160 4.160 18 N -0.517 5.517 19 Si 0.705 3.295 20 H -0.195 1.195 21 H -0.201 1.201 22 H -0.193 1.193 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.270 0.730 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.204 0.796 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.086 -9.409 10.850 17.549 hybrid contribution 0.932 -0.941 0.059 1.326 sum -9.154 -10.350 10.909 17.605 Atomic orbital electron populations 1.21929 0.93719 1.02311 1.03818 1.21694 0.97554 0.92283 1.03714 1.21557 0.81199 0.97998 0.95847 1.22013 1.01017 1.02150 0.94706 1.20761 0.84269 0.77307 0.85238 1.90766 1.19806 1.53766 1.69860 1.44325 1.08192 1.56392 1.26022 1.15754 0.84156 0.78436 0.80908 1.91005 1.18155 1.59901 1.72418 1.47108 1.05464 1.59170 1.20962 1.21102 0.93401 0.95517 0.88962 1.20117 0.84447 0.89919 0.84244 1.90564 1.54383 1.23369 1.76183 1.42163 1.41960 1.13940 1.24137 1.19412 1.26353 0.96072 1.01605 0.86252 1.25053 0.97170 0.97979 0.95817 1.69619 1.35456 1.33407 1.13226 0.86682 0.80106 0.84037 0.78663 1.19530 1.20102 1.19324 0.91017 0.91639 0.92082 0.89697 0.91104 0.89967 0.90711 0.90316 0.72982 0.87541 0.87943 0.79580 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.30 37.16 0.35 -1.08 16 2 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 3 C 0.12 1.58 0.86 -132.09 -0.11 1.47 16 4 C -0.14 -1.95 7.25 37.16 0.27 -1.68 16 5 C 0.54 7.16 7.25 -10.56 -0.08 7.09 16 6 O -0.47 -6.74 16.04 5.59 0.09 -6.65 16 7 N -0.68 -9.01 5.70 -15.79 -0.09 -9.10 16 8 C 0.71 11.62 8.68 -88.01 -0.76 10.86 16 9 O -0.54 -10.74 17.71 5.34 0.09 -10.65 16 10 N -0.59 -8.91 2.00 -166.45 -0.33 -9.24 16 11 C 0.14 2.05 6.34 -5.19 -0.03 2.02 16 12 C 0.43 9.03 7.65 -10.98 -0.08 8.95 16 13 O -0.56 -14.07 14.11 5.55 0.08 -13.99 16 14 N -0.58 -13.04 5.09 -10.96 -0.06 -13.10 16 15 C -0.31 -8.32 10.16 -14.94 -0.15 -8.47 16 16 H 0.12 3.75 7.39 -52.48 -0.39 3.36 16 17 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 18 N -0.88 -25.04 13.96 55.50 0.77 -24.26 16 19 Si 0.88 18.58 27.74 -169.99 -4.71 13.87 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 23 H 0.07 0.73 6.06 -51.93 -0.31 0.42 16 24 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.72 7.52 -51.93 -0.39 0.33 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.41 7.25 -51.93 -0.38 1.03 16 29 H 0.07 0.87 6.60 -51.93 -0.34 0.53 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.43 4.58 8.96 -40.82 -0.37 4.22 16 32 H 0.11 1.50 8.03 -51.93 -0.42 1.08 16 33 H 0.10 1.13 7.43 -51.93 -0.39 0.75 16 34 H 0.37 7.17 5.76 -40.82 -0.24 6.94 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 295.55 15.07 4.45 4.45 Total: -1.00 -33.87 295.55 -4.54 -38.41 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -3.99 Total: 11.30 kcal Atomic # 6 Polarization: 19.81 SS G_CDS: -0.84 Total: 18.97 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.30 Total: -55.71 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: 0.26 Total: -31.29 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.71 Total: 13.87 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.87 -4.54 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070508423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.557 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds