Wall clock time and date at job start Mon Mar 30 2020 05:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46910 * 2 1 4 4 C 1.52997 * 110.53763 * 300.70100 * 3 2 1 5 5 C 1.51581 * 110.59822 * 63.53751 * 3 2 1 6 6 O 1.21240 * 127.15551 * 298.71015 * 5 3 2 7 7 N 1.34764 * 105.69068 * 118.67667 * 5 3 2 8 8 C 1.33798 * 111.64240 * 359.97438 * 7 5 3 9 9 O 1.21529 * 123.77220 * 180.02562 * 8 7 5 10 10 N 1.34533 * 112.45502 * 0.02562 * 8 7 5 11 11 C 1.46497 * 126.68851 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47053 * 269.97299 * 11 10 8 13 13 O 1.21291 * 119.99669 * 359.97438 * 12 11 10 14 14 N 1.34782 * 120.00121 * 179.97438 * 12 11 10 15 15 C 1.37089 * 119.99853 * 179.97438 * 14 12 11 16 16 H 1.08005 * 120.00413 * 0.02562 * 15 14 12 17 17 C 1.38952 * 120.00126 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00475 * 179.97438 * 17 15 14 19 19 Si 1.86806 * 119.99676 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46796 * 90.00215 * 19 17 15 21 21 H 1.48498 * 109.47080 * 209.99978 * 19 17 15 22 22 H 1.48501 * 109.47114 * 330.00160 * 19 17 15 23 23 H 1.09000 * 109.46904 * 299.99877 * 1 2 3 24 24 H 1.09004 * 109.46885 * 59.99442 * 1 2 3 25 25 H 1.08994 * 109.47240 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47010 * 240.00856 * 2 1 3 27 27 H 1.08993 * 109.47291 * 120.00376 * 2 1 3 28 28 H 1.09002 * 109.47153 * 181.37658 * 4 3 2 29 29 H 1.09001 * 109.46832 * 61.37849 * 4 3 2 30 30 H 1.09004 * 109.47261 * 301.37830 * 4 3 2 31 31 H 0.97000 * 124.17939 * 180.02562 * 7 5 3 32 32 H 1.09001 * 109.47089 * 29.96808 * 11 10 8 33 33 H 1.08996 * 109.47520 * 149.97235 * 11 10 8 34 34 H 0.96998 * 119.99916 * 0.02562 * 14 12 11 35 35 H 0.97000 * 119.99776 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5292 2.1924 -1.2319 5 6 1.6216 2.1561 1.2702 6 8 0.4908 2.3683 1.6524 7 7 2.7680 2.5050 1.8868 8 6 3.8416 2.1146 1.1902 9 8 4.9866 2.3154 1.5446 10 7 3.5118 1.4749 0.0535 11 6 4.4362 0.9183 -0.9374 12 6 4.7516 1.9656 -1.9741 13 8 4.2529 3.0682 -1.8934 14 7 5.5879 1.6769 -2.9909 15 6 5.8744 2.6294 -3.9343 16 1 5.4303 3.6114 -3.8625 17 6 6.7361 2.3317 -4.9829 18 7 7.0104 3.2446 -5.8874 19 14 7.5047 0.6336 -5.1067 20 1 6.6223 -0.2518 -5.9084 21 1 8.8316 0.7377 -5.7652 22 1 7.6711 0.0651 -3.7449 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.9221 3.2092 -1.2272 29 1 0.4398 2.2238 -1.2124 30 1 1.8618 1.6786 -2.1339 31 1 2.8098 2.9797 2.7316 32 1 5.3564 0.6086 -0.4421 33 1 3.9756 0.0564 -1.4201 34 1 5.9864 0.7949 -3.0556 35 1 7.6122 3.0368 -6.6192 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070508423.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:45:27 Heat of formation + Delta-G solvation = -101.463057 kcal Electronic energy + Delta-G solvation = -21456.917669 eV Core-core repulsion = 18069.129304 eV Total energy + Delta-G solvation = -3387.788364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.62161 -40.30685 -39.74812 -37.86796 -36.25858 -35.91061 -34.26695 -33.71401 -30.60106 -29.42195 -26.64147 -26.14203 -24.35669 -22.89637 -21.34266 -21.17934 -20.28536 -19.21287 -18.16096 -17.59176 -17.38777 -16.92026 -16.83988 -16.31007 -16.02983 -15.60000 -15.47314 -15.04776 -14.64688 -14.42324 -14.24862 -14.01886 -13.59475 -13.30018 -13.02720 -12.90192 -12.84697 -12.47262 -12.39129 -11.99780 -11.91521 -11.88097 -11.50401 -11.46881 -11.03504 -10.83770 -10.23170 -9.89144 -8.39272 -6.00483 0.48844 1.11129 1.34283 1.38673 1.48307 1.89534 1.91580 1.94503 2.26153 2.87854 2.96011 3.17079 3.50464 3.69054 3.93893 4.16083 4.30482 4.37514 4.40450 4.55910 4.61604 4.79847 4.87689 4.99518 5.08558 5.10220 5.23970 5.26873 5.49635 5.56271 5.94280 5.95608 6.28026 6.58553 6.88689 6.99963 7.39237 7.94297 8.78138 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028211 B = 0.005370 C = 0.005118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.270320 B = 5212.504174 C = 5469.469603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C 0.122 3.878 4 C -0.135 4.135 5 C 0.540 3.460 6 O -0.479 6.479 7 N -0.671 5.671 8 C 0.702 3.298 9 O -0.581 6.581 10 N -0.590 5.590 11 C 0.142 3.858 12 C 0.429 3.571 13 O -0.608 6.608 14 N -0.584 5.584 15 C -0.325 4.325 16 H 0.054 0.946 17 C -0.015 4.015 18 N -0.936 5.936 19 Si 0.963 3.037 20 H -0.251 1.251 21 H -0.281 1.281 22 H -0.228 1.228 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.438 0.562 32 H 0.127 0.873 33 H 0.159 0.841 34 H 0.392 0.608 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.392 -14.392 11.644 21.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.146 4.146 3 C 0.034 3.966 4 C -0.193 4.193 5 C 0.327 3.673 6 O -0.350 6.350 7 N -0.341 5.341 8 C 0.403 3.597 9 O -0.457 6.457 10 N -0.326 5.326 11 C 0.017 3.983 12 C 0.216 3.784 13 O -0.493 6.493 14 N -0.226 5.226 15 C -0.454 4.454 16 H 0.072 0.928 17 C -0.214 4.214 18 N -0.576 5.576 19 Si 0.783 3.217 20 H -0.175 1.175 21 H -0.207 1.207 22 H -0.151 1.151 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.125 0.875 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.282 0.718 32 H 0.145 0.855 33 H 0.176 0.824 34 H 0.228 0.772 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.561 -13.470 11.730 20.750 hybrid contribution 0.938 0.488 -0.154 1.069 sum -9.623 -12.982 11.575 19.878 Atomic orbital electron populations 1.21914 0.93129 1.03513 1.02994 1.21766 0.97905 0.89510 1.05437 1.21788 0.79853 1.00225 0.94727 1.21926 1.02251 0.99839 0.95261 1.20857 0.83976 0.77048 0.85408 1.90774 1.19989 1.54036 1.70195 1.44208 1.07542 1.56039 1.26311 1.15972 0.84057 0.78199 0.81449 1.90975 1.19772 1.61426 1.73534 1.47259 1.06558 1.58530 1.20279 1.21261 0.95229 0.94402 0.87383 1.21398 0.82228 0.90561 0.84235 1.90565 1.55475 1.26032 1.77180 1.41951 1.42922 1.13918 1.23806 1.18952 1.27400 0.95082 1.03999 0.92813 1.26134 0.97097 1.03680 0.94449 1.69811 1.36669 1.36790 1.14341 0.85397 0.78377 0.77106 0.80862 1.17535 1.20654 1.15085 0.92593 0.91698 0.89895 0.87527 0.89786 0.94061 0.88611 0.90508 0.71816 0.85490 0.82374 0.77217 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.30 71.98 0.67 -1.58 16 2 C -0.11 -1.63 5.20 30.60 0.16 -1.47 16 3 C 0.12 2.87 0.86 2.98 0.00 2.87 16 4 C -0.13 -3.61 7.25 71.98 0.52 -3.08 16 5 C 0.54 13.59 7.25 87.94 0.64 14.23 16 6 O -0.48 -13.01 16.04 -2.91 -0.05 -13.05 16 7 N -0.67 -17.14 5.70 -441.12 -2.52 -19.66 16 8 C 0.70 22.33 8.68 179.44 1.56 23.89 16 9 O -0.58 -22.73 17.71 -3.81 -0.07 -22.80 16 10 N -0.59 -16.53 2.00 -798.95 -1.60 -18.12 16 11 C 0.14 3.81 6.34 85.63 0.54 4.35 16 12 C 0.43 17.78 7.65 87.66 0.67 18.45 16 13 O -0.61 -31.39 14.11 -3.06 -0.04 -31.44 16 14 N -0.58 -25.58 5.09 -306.98 -1.56 -27.15 16 15 C -0.33 -18.31 10.16 84.04 0.85 -17.46 16 16 H 0.05 3.66 7.39 -2.91 -0.02 3.63 16 17 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 18 N -0.94 -55.47 13.96 21.66 0.30 -55.16 16 19 Si 0.96 36.93 27.74 68.60 1.90 38.83 16 20 H -0.25 -8.91 7.11 99.48 0.71 -8.20 16 21 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.23 -7.20 6.52 99.48 0.65 -6.55 16 23 H 0.06 0.99 6.06 -2.39 -0.01 0.98 16 24 H 0.06 0.93 6.54 -2.38 -0.02 0.91 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.11 1.20 7.52 -2.38 -0.02 1.19 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.04 1.44 7.25 -2.39 -0.02 1.42 16 29 H 0.10 2.11 6.60 -2.39 -0.02 2.09 16 30 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.44 9.08 8.96 -92.71 -0.83 8.25 16 32 H 0.13 3.04 8.03 -2.39 -0.02 3.02 16 33 H 0.16 2.55 7.43 -2.39 -0.02 2.54 16 34 H 0.39 13.78 5.76 -92.71 -0.53 13.24 16 35 H 0.28 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -80.32 295.55 2.18 -78.14 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: -0.27 Total: 30.56 kcal Atomic # 6 Polarization: 33.78 SS G_CDS: 6.08 Total: 39.86 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -5.37 Total: -120.10 kcal Atomic # 8 Polarization: -67.13 SS G_CDS: -0.16 Total: -67.29 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 1.90 Total: 38.83 kcal Total: -80.32 2.18 -78.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070508423.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.327 kcal (2) G-P(sol) polarization free energy of solvation -80.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds