Wall clock time and date at job start Mon Mar 30 2020 04:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47342 * 2 1 4 4 H 1.09003 * 109.46498 * 54.58463 * 3 2 1 5 5 N 1.46897 * 109.46918 * 294.58509 * 3 2 1 6 6 C 1.46902 * 110.99617 * 154.27080 * 5 3 2 7 7 C 1.50705 * 109.46724 * 184.98724 * 6 5 3 8 8 O 1.21286 * 120.00403 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99614 * 179.72665 * 7 6 5 10 10 C 1.37090 * 119.99762 * 179.97438 * 9 7 6 11 11 H 1.08002 * 119.99935 * 359.97438 * 10 9 7 12 12 C 1.38951 * 120.00187 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00372 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99615 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47297 * 89.99995 * 14 12 10 16 16 H 1.48508 * 109.46819 * 209.99790 * 14 12 10 17 17 H 1.48503 * 109.47113 * 329.99616 * 14 12 10 18 18 C 1.50697 * 109.47120 * 174.58355 * 3 2 1 19 19 N 1.29026 * 124.91252 * 74.69966 * 18 3 2 20 20 C 1.31789 * 117.12153 * 179.80944 * 19 18 3 21 21 C 1.33639 * 114.49823 * 0.47420 * 20 19 18 22 22 S 1.70973 * 124.91784 * 254.99809 * 18 3 2 23 23 H 1.09002 * 109.47340 * 65.04702 * 1 2 3 24 24 H 1.09002 * 109.47435 * 185.05036 * 1 2 3 25 25 H 1.09007 * 109.47242 * 305.04834 * 1 2 3 26 26 H 1.09005 * 109.47341 * 239.99941 * 2 1 3 27 27 H 1.08999 * 109.47344 * 120.00120 * 2 1 3 28 28 H 1.00896 * 111.00171 * 278.22134 * 5 3 2 29 29 H 1.09000 * 109.47321 * 64.98866 * 6 5 3 30 30 H 1.09003 * 109.47273 * 304.98194 * 6 5 3 31 31 H 0.96993 * 119.99810 * 359.97438 * 9 7 6 32 32 H 0.97006 * 120.00169 * 180.02562 * 13 12 10 33 33 H 1.07999 * 122.75049 * 180.22535 * 20 19 18 34 34 H 1.08005 * 126.03559 * 179.72056 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9835 0.8376 5 7 1.6600 2.0962 -1.2594 6 6 1.5632 3.5521 -1.0885 7 6 1.0544 4.1747 -2.3631 8 8 0.7972 3.4746 -3.3196 9 7 0.8794 5.5090 -2.4382 10 6 0.4171 6.0755 -3.5979 11 1 0.1935 5.4526 -4.4514 12 6 0.2362 7.4510 -3.6752 13 7 -0.2065 7.9940 -4.7869 14 14 0.6237 8.5284 -2.1992 15 1 2.0427 8.9615 -2.2614 16 1 -0.2594 9.7223 -2.2124 17 1 0.3955 7.7578 -0.9504 18 6 3.5410 1.4446 0.1341 19 7 4.3669 1.1344 -0.8074 20 6 5.6523 1.1925 -0.5222 21 6 5.9254 1.5632 0.7323 22 16 4.3958 1.8513 1.5579 23 1 -0.3634 0.4335 -0.9317 24 1 -0.3634 -1.0237 0.0905 25 1 -0.3634 0.5902 0.8414 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.3057 1.8610 -1.9981 29 1 2.5479 3.9567 -0.8544 30 1 0.8747 3.7774 -0.2741 31 1 1.0806 6.0684 -1.6718 32 1 -0.3325 8.9544 -4.8410 33 1 6.4217 0.9558 -1.2422 34 1 6.9100 1.6672 1.1641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070732928.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:21 Heat of formation + Delta-G solvation = 11.734213 kcal Electronic energy + Delta-G solvation = -18014.157311 eV Core-core repulsion = 15074.030419 eV Total energy + Delta-G solvation = -2940.126891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.01463 -38.43757 -36.64535 -33.96665 -32.42176 -31.60354 -30.52896 -27.72186 -26.04393 -24.21765 -23.36111 -21.66320 -19.49249 -19.37575 -18.58029 -18.15718 -16.21415 -15.82307 -15.35244 -14.98182 -14.87219 -14.61613 -14.14086 -13.83386 -13.62312 -13.17385 -12.94311 -12.53771 -12.29195 -12.04081 -11.81953 -11.68186 -11.58159 -11.15768 -11.10407 -10.79709 -10.58108 -9.95324 -9.86684 -9.58269 -9.54730 -9.07865 -8.62303 -8.20506 -8.14465 -6.28652 -3.79813 0.52150 1.18573 1.56585 2.68802 3.03822 3.07949 3.16046 3.77030 3.85393 4.11625 4.18350 4.71242 4.88266 4.97320 5.03254 5.11010 5.24232 5.30125 5.43105 5.57883 5.62300 5.74571 5.86320 5.91551 5.96929 6.02545 6.24038 6.52856 7.00547 7.53822 7.60521 7.60951 8.17132 8.62588 8.97774 9.45036 9.85815 10.84593 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.004783 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.699609 B = 5852.723518 C = 6476.952338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 C 0.164 3.836 4 H 0.096 0.904 5 N -0.640 5.640 6 C 0.043 3.957 7 C 0.453 3.547 8 O -0.560 6.560 9 N -0.592 5.592 10 C -0.304 4.304 11 H 0.120 0.880 12 C 0.041 3.959 13 N -0.882 5.882 14 Si 0.878 3.122 15 H -0.272 1.272 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.027 3.973 19 N -0.467 5.467 20 C 0.043 3.957 21 C -0.264 4.264 22 S 0.108 5.892 23 H 0.075 0.925 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.365 0.635 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.370 0.630 32 H 0.273 0.727 33 H 0.176 0.824 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.778 -11.992 17.027 23.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C 0.049 3.951 4 H 0.114 0.886 5 N -0.273 5.273 6 C -0.090 4.090 7 C 0.239 3.761 8 O -0.441 6.441 9 N -0.232 5.232 10 C -0.432 4.432 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.522 5.522 14 Si 0.705 3.295 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.254 4.254 19 N -0.182 5.182 20 C -0.108 4.108 21 C -0.403 4.403 22 S 0.362 5.638 23 H 0.094 0.906 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.187 0.813 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.202 0.798 32 H 0.084 0.916 33 H 0.193 0.807 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 8.365 -12.208 16.792 22.383 hybrid contribution 2.186 1.221 0.590 2.572 sum 10.551 -10.988 17.382 23.113 Atomic orbital electron populations 1.21665 0.94264 1.00896 1.03289 1.21451 0.97140 0.93207 1.02163 1.20609 0.81885 0.97879 0.94707 0.88647 1.60325 1.54856 1.07128 1.04952 1.21822 0.99931 0.88746 0.98484 1.19610 0.84627 0.82558 0.89329 1.90574 1.54099 1.60937 1.38508 1.42196 1.60481 1.06088 1.14399 1.19434 1.40220 0.91862 0.91705 0.86254 1.25024 0.97504 0.96560 0.97043 1.69621 1.44991 1.12053 1.25565 0.86689 0.79167 0.81191 0.82455 1.19718 1.20151 1.19474 1.28652 1.03007 1.01462 0.92241 1.66139 1.02356 1.16994 1.32683 1.21863 0.92485 1.01060 0.95378 1.27061 1.02344 1.12148 0.98758 1.84025 0.98498 1.63367 1.17922 0.90621 0.93183 0.93207 0.90890 0.92136 0.81253 0.94003 0.89296 0.79767 0.91649 0.80718 0.80702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.75 37.15 0.36 -1.23 16 2 C -0.10 -1.12 5.59 -26.73 -0.15 -1.27 16 3 C 0.16 2.02 2.48 -68.86 -0.17 1.85 16 4 H 0.10 1.03 7.71 -51.93 -0.40 0.63 16 5 N -0.64 -10.27 5.35 -109.21 -0.58 -10.86 16 6 C 0.04 0.73 5.99 -4.97 -0.03 0.70 16 7 C 0.45 10.52 7.83 -10.98 -0.09 10.43 16 8 O -0.56 -15.36 15.89 5.55 0.09 -15.27 16 9 N -0.59 -14.35 5.09 -10.96 -0.06 -14.41 16 10 C -0.30 -8.71 10.16 -14.94 -0.15 -8.86 16 11 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 12 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -26.04 13.96 55.50 0.77 -25.26 16 14 Si 0.88 19.57 27.74 -169.99 -4.71 14.86 16 15 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 18 C 0.03 0.33 6.07 -13.46 -0.08 0.25 16 19 N -0.47 -6.34 9.90 -11.86 -0.12 -6.46 16 20 C 0.04 0.48 11.35 -19.18 -0.22 0.26 16 21 C -0.26 -2.47 11.37 29.12 0.33 -2.14 16 22 S 0.11 1.07 23.18 -107.50 -2.49 -1.43 16 23 H 0.07 1.03 7.91 -51.93 -0.41 0.62 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.37 6.54 7.86 -39.29 -0.31 6.23 16 29 H 0.04 0.66 8.11 -51.93 -0.42 0.24 16 30 H 0.09 1.31 7.93 -51.93 -0.41 0.89 16 31 H 0.37 7.87 5.76 -40.82 -0.24 7.64 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.18 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.18 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 307.58 15.07 4.64 4.64 Total: -1.00 -33.03 307.58 -7.04 -40.06 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -4.28 Total: 13.07 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.29 Total: 1.05 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.02 Total: -56.99 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.09 Total: -15.27 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.86 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.49 Total: -1.43 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.03 -7.04 -40.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070732928.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.799 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds