Wall clock time and date at job start Mon Mar 30 2020 04:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.47342 * 2 1 4 4 H 1.09003 * 109.46498 * 54.58463 * 3 2 1 5 5 N 1.46897 * 109.46918 * 294.58509 * 3 2 1 6 6 C 1.46902 * 110.99617 * 154.27080 * 5 3 2 7 7 C 1.50705 * 109.46724 * 184.98724 * 6 5 3 8 8 O 1.21286 * 120.00403 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99614 * 179.72665 * 7 6 5 10 10 C 1.37090 * 119.99762 * 179.97438 * 9 7 6 11 11 H 1.08002 * 119.99935 * 359.97438 * 10 9 7 12 12 C 1.38951 * 120.00187 * 179.97438 * 10 9 7 13 13 N 1.31409 * 120.00372 * 179.97438 * 12 10 9 14 14 Si 1.86806 * 119.99615 * 0.02562 * 12 10 9 15 15 H 1.48496 * 109.47297 * 89.99995 * 14 12 10 16 16 H 1.48508 * 109.46819 * 209.99790 * 14 12 10 17 17 H 1.48503 * 109.47113 * 329.99616 * 14 12 10 18 18 C 1.50697 * 109.47120 * 174.58355 * 3 2 1 19 19 N 1.29026 * 124.91252 * 74.69966 * 18 3 2 20 20 C 1.31789 * 117.12153 * 179.80944 * 19 18 3 21 21 C 1.33639 * 114.49823 * 0.47420 * 20 19 18 22 22 S 1.70973 * 124.91784 * 254.99809 * 18 3 2 23 23 H 1.09002 * 109.47340 * 65.04702 * 1 2 3 24 24 H 1.09002 * 109.47435 * 185.05036 * 1 2 3 25 25 H 1.09007 * 109.47242 * 305.04834 * 1 2 3 26 26 H 1.09005 * 109.47341 * 239.99941 * 2 1 3 27 27 H 1.08999 * 109.47344 * 120.00120 * 2 1 3 28 28 H 1.00896 * 111.00171 * 278.22134 * 5 3 2 29 29 H 1.09000 * 109.47321 * 64.98866 * 6 5 3 30 30 H 1.09003 * 109.47273 * 304.98194 * 6 5 3 31 31 H 0.96993 * 119.99810 * 359.97438 * 9 7 6 32 32 H 0.97006 * 120.00169 * 180.02562 * 13 12 10 33 33 H 1.07999 * 122.75049 * 180.22535 * 20 19 18 34 34 H 1.08005 * 126.03559 * 179.72056 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9835 0.8376 5 7 1.6600 2.0962 -1.2594 6 6 1.5632 3.5521 -1.0885 7 6 1.0544 4.1747 -2.3631 8 8 0.7972 3.4746 -3.3196 9 7 0.8794 5.5090 -2.4382 10 6 0.4171 6.0755 -3.5979 11 1 0.1935 5.4526 -4.4514 12 6 0.2362 7.4510 -3.6752 13 7 -0.2065 7.9940 -4.7869 14 14 0.6237 8.5284 -2.1992 15 1 2.0427 8.9615 -2.2614 16 1 -0.2594 9.7223 -2.2124 17 1 0.3955 7.7578 -0.9504 18 6 3.5410 1.4446 0.1341 19 7 4.3669 1.1344 -0.8074 20 6 5.6523 1.1925 -0.5222 21 6 5.9254 1.5632 0.7323 22 16 4.3958 1.8513 1.5579 23 1 -0.3634 0.4335 -0.9317 24 1 -0.3634 -1.0237 0.0905 25 1 -0.3634 0.5902 0.8414 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.3057 1.8610 -1.9981 29 1 2.5479 3.9567 -0.8544 30 1 0.8747 3.7774 -0.2741 31 1 1.0806 6.0684 -1.6718 32 1 -0.3325 8.9544 -4.8410 33 1 6.4217 0.9558 -1.2422 34 1 6.9100 1.6672 1.1641 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070732928.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:21 Heat of formation + Delta-G solvation = -14.244707 kcal Electronic energy + Delta-G solvation = -18015.283841 eV Core-core repulsion = 15074.030419 eV Total energy + Delta-G solvation = -2941.253422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.92192 -40.20237 -37.78110 -35.99847 -33.83607 -33.46754 -31.37732 -28.94080 -27.43985 -25.61191 -24.56712 -22.55204 -21.30790 -20.36914 -20.30120 -19.25829 -17.73543 -17.08393 -16.78520 -16.35535 -16.08585 -15.72729 -15.34619 -15.17801 -14.88071 -14.47256 -14.39487 -14.14782 -13.73933 -13.45694 -13.05196 -12.90477 -12.51817 -12.43725 -12.41857 -12.03826 -11.95875 -11.70884 -11.52396 -10.72138 -10.47285 -10.36068 -10.25562 -9.84689 -9.45381 -8.41532 -6.02592 -0.26714 0.42514 0.78721 1.29428 1.34842 1.44071 1.86759 1.94366 2.22687 2.66432 3.06534 3.14431 3.49929 3.84023 4.06673 4.14020 4.25136 4.37300 4.38394 4.48142 4.53862 4.57257 4.72733 4.96670 5.14741 5.20236 5.32362 5.52260 5.60048 5.86830 5.98746 6.23596 6.58995 6.80310 6.87415 7.38513 7.95488 8.76261 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.021037 B = 0.004783 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.699609 B = 5852.723518 C = 6476.952338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C 0.165 3.835 4 H 0.118 0.882 5 N -0.656 5.656 6 C 0.059 3.941 7 C 0.451 3.549 8 O -0.611 6.611 9 N -0.590 5.590 10 C -0.329 4.329 11 H 0.054 0.946 12 C -0.014 4.014 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.258 1.258 16 H -0.273 1.273 17 H -0.229 1.229 18 C -0.001 4.001 19 N -0.502 5.502 20 C 0.016 3.984 21 C -0.252 4.252 22 S 0.156 5.844 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.351 0.649 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.389 0.611 32 H 0.279 0.721 33 H 0.188 0.812 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.286 -11.366 21.514 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.135 4.135 3 C 0.052 3.948 4 H 0.136 0.864 5 N -0.288 5.288 6 C -0.073 4.073 7 C 0.238 3.762 8 O -0.495 6.495 9 N -0.232 5.232 10 C -0.458 4.458 11 H 0.072 0.928 12 C -0.213 4.213 13 N -0.575 5.575 14 Si 0.783 3.217 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.153 1.153 18 C -0.280 4.280 19 N -0.217 5.217 20 C -0.134 4.134 21 C -0.391 4.391 22 S 0.410 5.590 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.171 0.829 29 H 0.081 0.919 30 H 0.142 0.858 31 H 0.225 0.775 32 H 0.089 0.911 33 H 0.205 0.795 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 9.873 -11.606 21.315 26.202 hybrid contribution 1.757 0.910 -0.867 2.160 sum 11.630 -10.696 20.449 25.842 Atomic orbital electron populations 1.21619 0.94256 1.01732 1.02113 1.21423 0.97023 0.92814 1.02232 1.20674 0.82665 0.98125 0.93369 0.86431 1.60303 1.55320 1.06592 1.06562 1.21718 1.01311 0.89119 0.95160 1.20869 0.82500 0.81953 0.90842 1.90551 1.55725 1.62113 1.41149 1.42009 1.60777 1.06821 1.13631 1.19005 1.42608 0.92195 0.92034 0.92768 1.26112 0.96218 0.97700 1.01243 1.69806 1.45972 1.12944 1.28786 0.85385 0.79369 0.78428 0.78474 1.18291 1.19810 1.15259 1.28467 1.02896 1.02991 0.93678 1.66120 1.03607 1.17756 1.34224 1.22149 0.92101 1.02432 0.96732 1.27498 1.03748 1.09831 0.98036 1.83789 0.97710 1.61950 1.15599 0.93802 0.91903 0.91763 0.92945 0.89841 0.82949 0.91916 0.85827 0.77502 0.91112 0.79525 0.77695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.75 71.98 0.70 -2.22 16 2 C -0.10 -2.00 5.59 30.59 0.17 -1.83 16 3 C 0.17 3.75 2.48 44.17 0.11 3.86 16 4 H 0.12 2.10 7.71 -2.39 -0.02 2.08 16 5 N -0.66 -20.68 5.35 -499.44 -2.67 -23.35 16 6 C 0.06 1.90 5.99 85.56 0.51 2.42 16 7 C 0.45 21.09 7.83 87.66 0.69 21.77 16 8 O -0.61 -35.23 15.89 -3.05 -0.05 -35.28 16 9 N -0.59 -28.53 5.09 -306.98 -1.56 -30.09 16 10 C -0.33 -19.68 10.16 84.04 0.85 -18.82 16 11 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 12 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 13 N -0.93 -57.02 13.96 21.66 0.30 -56.71 16 14 Si 0.96 39.07 27.74 68.60 1.90 40.98 16 15 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.23 -7.78 6.52 99.48 0.65 -7.13 16 18 C 0.00 -0.03 6.07 88.52 0.54 0.51 16 19 N -0.50 -13.12 9.90 -191.45 -1.90 -15.02 16 20 C 0.02 0.33 11.35 83.66 0.95 1.28 16 21 C -0.25 -3.90 11.37 66.78 0.76 -3.14 16 22 S 0.16 2.50 23.18 -56.49 -1.31 1.19 16 23 H 0.04 1.19 7.91 -2.39 -0.02 1.18 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 26 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.35 12.84 7.86 -89.70 -0.71 12.14 16 29 H 0.06 1.79 8.11 -2.39 -0.02 1.77 16 30 H 0.12 3.14 7.93 -2.39 -0.02 3.12 16 31 H 0.39 15.51 5.76 -92.71 -0.53 14.98 16 32 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 33 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.21 1.77 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -78.17 307.58 0.30 -77.87 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.17 Total: 36.91 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 5.75 Total: 3.50 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -5.83 Total: -125.17 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.05 Total: -35.28 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 1.90 Total: 40.98 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.31 Total: 1.19 kcal Total: -78.17 0.30 -77.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070732928.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.625 kcal (2) G-P(sol) polarization free energy of solvation -78.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds