Wall clock time and date at job start Mon Mar 30 2020 04:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46951 * 2 1 4 4 N 1.46900 * 109.46936 * 240.00470 * 2 1 3 5 5 C 1.46895 * 111.00083 * 85.00069 * 4 2 1 6 6 C 1.50700 * 109.47149 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00346 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00155 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00060 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47174 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00308 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00338 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99771 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47560 * 89.99849 * 14 12 10 16 16 H 1.48504 * 109.47085 * 209.99921 * 14 12 10 17 17 H 1.48503 * 109.47298 * 329.99735 * 14 12 10 18 18 C 1.50698 * 109.47406 * 120.00471 * 2 1 3 19 19 N 1.29024 * 124.91848 * 255.00564 * 18 2 1 20 20 C 1.31777 * 117.13032 * 180.02562 * 19 18 2 21 21 C 1.33647 * 114.49749 * 359.97438 * 20 19 18 22 22 S 1.70986 * 124.91681 * 75.31038 * 18 2 1 23 23 H 1.09003 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46869 * 299.99393 * 1 2 3 25 25 H 1.08997 * 109.46886 * 59.99921 * 1 2 3 26 26 H 1.00900 * 111.00065 * 321.04004 * 4 2 1 27 27 H 1.09001 * 109.47237 * 299.99651 * 5 4 2 28 28 H 1.08996 * 109.47529 * 60.00002 * 5 4 2 29 29 H 0.97003 * 119.99753 * 359.97438 * 8 6 5 30 30 H 1.08994 * 109.47419 * 299.99651 * 9 8 6 31 31 H 1.09001 * 109.47294 * 60.00176 * 9 8 6 32 32 H 0.96996 * 120.00277 * 180.02562 * 13 12 10 33 33 H 1.07995 * 122.75800 * 179.97438 * 20 19 18 34 34 H 1.08002 * 126.03488 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3468 6 6 2.5873 -0.5216 -3.5561 7 8 2.8676 -1.6985 -3.4704 8 7 2.7282 0.1208 -4.7325 9 6 3.2195 -0.6027 -5.9079 10 6 3.2838 0.3361 -7.0850 11 1 2.9879 1.3683 -6.9692 12 6 3.7204 -0.1227 -8.3097 13 7 3.7760 0.6965 -9.3371 14 14 4.2315 -1.9081 -8.5100 15 1 3.0521 -2.7194 -8.9052 16 1 5.2762 -2.0091 -9.5606 17 1 4.7727 -2.4155 -7.2235 18 6 2.0324 -0.7105 1.2304 19 7 2.5367 -0.1281 2.2654 20 6 2.9289 -0.9007 3.2582 21 6 2.7447 -2.2079 3.0492 22 16 2.0235 -2.4057 1.4539 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 1.4496 -1.4979 -1.4101 27 1 1.0871 0.6165 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 2.5043 1.0621 -4.8010 30 1 4.2147 -0.9967 -5.7022 31 1 2.5428 -1.4260 -6.1368 32 1 4.0828 0.3736 -10.1987 33 1 3.3635 -0.5099 4.1663 34 1 2.9980 -3.0028 3.7351 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070733148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:36 Heat of formation + Delta-G solvation = 9.881845 kcal Electronic energy + Delta-G solvation = -17461.813513 eV Core-core repulsion = 14521.606296 eV Total energy + Delta-G solvation = -2940.207216 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.88539 -39.07960 -36.82472 -34.29399 -32.39811 -31.68531 -29.58031 -28.27378 -26.19514 -25.20272 -22.35299 -21.81854 -20.39439 -19.77926 -18.27159 -17.25699 -16.33459 -15.87294 -15.62928 -15.39086 -14.85465 -14.67184 -14.33124 -14.03090 -13.74857 -13.35154 -12.98434 -12.81469 -12.62360 -12.37320 -12.15071 -11.78549 -11.68088 -11.51866 -11.03226 -10.77262 -9.98214 -9.80384 -9.54220 -9.51237 -9.29194 -9.03436 -8.79217 -8.64352 -8.16414 -6.22720 -4.25171 0.57067 1.25351 1.67496 2.66163 3.19047 3.26289 3.32603 3.41740 3.43928 3.99676 4.32381 4.38124 4.69714 4.80042 4.95634 5.01515 5.12491 5.19724 5.25844 5.31325 5.43202 5.44906 5.52803 5.75506 5.94266 6.59364 6.81414 7.05790 7.11411 7.20546 7.37756 7.58323 8.11810 8.49307 8.73639 8.91007 9.37385 10.89225 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.039682 B = 0.003326 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.445276 B = 8416.631145 C = 8772.135026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.157 3.843 3 H 0.111 0.889 4 N -0.667 5.667 5 C 0.043 3.957 6 C 0.499 3.501 7 O -0.545 6.545 8 N -0.706 5.706 9 C 0.221 3.779 10 C -0.544 4.544 11 H 0.080 0.920 12 C 0.077 3.923 13 N -0.893 5.893 14 Si 0.877 3.123 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.260 1.260 18 C 0.069 3.931 19 N -0.480 5.480 20 C 0.038 3.962 21 C -0.274 4.274 22 S 0.152 5.848 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.354 0.646 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.396 0.604 30 H 0.026 0.974 31 H 0.020 0.980 32 H 0.268 0.732 33 H 0.174 0.826 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.693 -2.548 23.103 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.043 3.957 3 H 0.129 0.871 4 N -0.300 5.300 5 C -0.090 4.090 6 C 0.283 3.717 7 O -0.423 6.423 8 N -0.355 5.355 9 C 0.099 3.901 10 C -0.582 4.582 11 H 0.098 0.902 12 C -0.126 4.126 13 N -0.530 5.530 14 Si 0.703 3.297 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.185 1.185 18 C -0.209 4.209 19 N -0.195 5.195 20 C -0.114 4.114 21 C -0.414 4.414 22 S 0.406 5.594 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.175 0.825 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.230 0.770 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.191 0.809 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -6.037 -3.586 22.474 23.545 hybrid contribution -0.232 0.023 0.370 0.438 sum -6.269 -3.564 22.844 23.955 Atomic orbital electron populations 1.22547 0.94818 1.03112 1.03544 1.19976 0.93002 0.97744 0.84981 0.87115 1.60050 1.58157 1.09402 1.02410 1.21856 1.01448 0.95945 0.89716 1.20333 0.79245 0.87847 0.84290 1.90666 1.50776 1.16106 1.84748 1.46156 1.65394 1.14130 1.09854 1.19483 0.94536 0.93160 0.82893 1.21094 1.46415 0.97894 0.92799 0.90247 1.24799 0.94430 0.97975 0.95436 1.69877 1.46335 1.35495 1.01274 0.86813 0.79070 0.85012 0.78777 1.19864 1.20889 1.18461 1.26964 1.01195 0.94519 0.98234 1.66215 1.13294 1.39150 1.00844 1.21745 1.01804 0.89026 0.98790 1.27147 1.11410 1.01513 1.01309 1.84139 1.55921 1.08502 1.10863 0.91807 0.91127 0.90903 0.82512 0.91949 0.87902 0.77005 0.95661 0.96193 0.92242 0.80943 0.80778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 9.14 37.16 0.34 -1.11 16 2 C 0.16 1.62 3.10 -68.86 -0.21 1.41 16 3 H 0.11 1.12 7.80 -51.93 -0.40 0.72 16 4 N -0.67 -8.35 5.66 -109.23 -0.62 -8.97 16 5 C 0.04 0.53 5.96 -4.98 -0.03 0.50 16 6 C 0.50 9.05 7.87 -10.98 -0.09 8.96 16 7 O -0.54 -12.04 16.20 5.56 0.09 -11.95 16 8 N -0.71 -13.78 5.55 -61.47 -0.34 -14.12 16 9 C 0.22 5.38 4.50 -5.19 -0.02 5.35 16 10 C -0.54 -14.78 9.83 -34.44 -0.34 -15.12 16 11 H 0.08 2.24 7.84 -52.48 -0.41 1.82 16 12 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 13 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 14 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 18 C 0.07 0.80 6.32 -13.46 -0.09 0.72 16 19 N -0.48 -5.93 10.54 -11.86 -0.13 -6.05 16 20 C 0.04 0.39 11.35 -19.18 -0.22 0.17 16 21 C -0.27 -2.50 11.37 29.12 0.33 -2.17 16 22 S 0.15 1.57 22.96 -107.50 -2.47 -0.90 16 23 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.53 7.45 -51.93 -0.39 0.14 16 26 H 0.35 4.47 8.17 -39.29 -0.32 4.15 16 27 H 0.06 0.62 7.44 -51.93 -0.39 0.24 16 28 H 0.10 1.15 8.05 -51.93 -0.42 0.73 16 29 H 0.40 6.70 8.32 -40.82 -0.34 6.36 16 30 H 0.03 0.66 7.20 -51.93 -0.37 0.28 16 31 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 33 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 34 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 308.54 15.07 4.65 4.65 Total: -1.00 -33.18 308.54 -7.42 -40.60 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -4.29 Total: 4.87 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.42 Total: 0.80 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.31 Total: -54.75 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.47 Total: -0.90 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -33.18 -7.42 -40.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070733148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.481 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds