Wall clock time and date at job start Mon Mar 30 2020 04:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.46951 * 2 1 4 4 N 1.46900 * 109.46936 * 240.00470 * 2 1 3 5 5 C 1.46895 * 111.00083 * 85.00069 * 4 2 1 6 6 C 1.50700 * 109.47149 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00346 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00155 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00060 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47174 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99610 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00308 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00338 * 179.97438 * 12 10 9 14 14 Si 1.86798 * 119.99771 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47560 * 89.99849 * 14 12 10 16 16 H 1.48504 * 109.47085 * 209.99921 * 14 12 10 17 17 H 1.48503 * 109.47298 * 329.99735 * 14 12 10 18 18 C 1.50698 * 109.47406 * 120.00471 * 2 1 3 19 19 N 1.29024 * 124.91848 * 255.00564 * 18 2 1 20 20 C 1.31777 * 117.13032 * 180.02562 * 19 18 2 21 21 C 1.33647 * 114.49749 * 359.97438 * 20 19 18 22 22 S 1.70986 * 124.91681 * 75.31038 * 18 2 1 23 23 H 1.09003 * 109.47000 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46869 * 299.99393 * 1 2 3 25 25 H 1.08997 * 109.46886 * 59.99921 * 1 2 3 26 26 H 1.00900 * 111.00065 * 321.04004 * 4 2 1 27 27 H 1.09001 * 109.47237 * 299.99651 * 5 4 2 28 28 H 1.08996 * 109.47529 * 60.00002 * 5 4 2 29 29 H 0.97003 * 119.99753 * 359.97438 * 8 6 5 30 30 H 1.08994 * 109.47419 * 299.99651 * 9 8 6 31 31 H 1.09001 * 109.47294 * 60.00176 * 9 8 6 32 32 H 0.96996 * 120.00277 * 180.02562 * 13 12 10 33 33 H 1.07995 * 122.75800 * 179.97438 * 20 19 18 34 34 H 1.08002 * 126.03488 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3468 6 6 2.5873 -0.5216 -3.5561 7 8 2.8676 -1.6985 -3.4704 8 7 2.7282 0.1208 -4.7325 9 6 3.2195 -0.6027 -5.9079 10 6 3.2838 0.3361 -7.0850 11 1 2.9879 1.3683 -6.9692 12 6 3.7204 -0.1227 -8.3097 13 7 3.7760 0.6965 -9.3371 14 14 4.2315 -1.9081 -8.5100 15 1 3.0521 -2.7194 -8.9052 16 1 5.2762 -2.0091 -9.5606 17 1 4.7727 -2.4155 -7.2235 18 6 2.0324 -0.7105 1.2304 19 7 2.5367 -0.1281 2.2654 20 6 2.9289 -0.9007 3.2582 21 6 2.7447 -2.2079 3.0492 22 16 2.0235 -2.4057 1.4539 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 1.4496 -1.4979 -1.4101 27 1 1.0871 0.6165 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 2.5043 1.0621 -4.8010 30 1 4.2147 -0.9967 -5.7022 31 1 2.5428 -1.4260 -6.1368 32 1 4.0828 0.3736 -10.1987 33 1 3.3635 -0.5099 4.1663 34 1 2.9980 -3.0028 3.7351 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070733148.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:36 Heat of formation + Delta-G solvation = -16.534921 kcal Electronic energy + Delta-G solvation = -17462.959030 eV Core-core repulsion = 14521.606296 eV Total energy + Delta-G solvation = -2941.352733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.77679 -40.42361 -37.79002 -36.09236 -34.39277 -32.64346 -30.53038 -29.86919 -27.22712 -26.17741 -23.92773 -22.89468 -21.61795 -20.91059 -19.37203 -18.77732 -17.74324 -17.21659 -16.80962 -16.56909 -16.02446 -15.81998 -15.60783 -15.13781 -15.04306 -14.58122 -14.28084 -14.06218 -13.95565 -13.69443 -13.16128 -13.05106 -12.81864 -12.65832 -12.43835 -12.25786 -11.93190 -11.64439 -10.91237 -10.83058 -10.59893 -10.32631 -9.91442 -9.80658 -9.53207 -8.39366 -6.46136 -0.19581 0.50003 0.91244 1.33158 1.35869 1.48332 1.76274 1.87297 2.28033 2.31284 2.95799 2.96426 3.47711 3.87544 4.03907 4.10362 4.24901 4.35029 4.42264 4.48995 4.60190 4.74043 4.80281 4.82170 5.05062 5.14892 5.23080 5.27727 5.54359 5.74721 6.10570 6.18465 6.55526 6.80540 6.88596 7.17060 7.45112 8.75371 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.039682 B = 0.003326 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.445276 B = 8416.631145 C = 8772.135026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.160 3.840 3 H 0.114 0.886 4 N -0.683 5.683 5 C 0.057 3.943 6 C 0.498 3.502 7 O -0.586 6.586 8 N -0.706 5.706 9 C 0.233 3.767 10 C -0.546 4.546 11 H 0.061 0.939 12 C 0.026 3.974 13 N -0.932 5.932 14 Si 0.937 3.063 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.262 1.262 18 C 0.052 3.948 19 N -0.504 5.504 20 C 0.020 3.980 21 C -0.264 4.264 22 S 0.141 5.859 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.352 0.648 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.410 0.590 30 H 0.009 0.991 31 H 0.012 0.988 32 H 0.272 0.728 33 H 0.196 0.804 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 -2.967 24.650 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.047 3.953 3 H 0.131 0.869 4 N -0.317 5.317 5 C -0.075 4.075 6 C 0.285 3.715 7 O -0.466 6.466 8 N -0.357 5.357 9 C 0.109 3.891 10 C -0.584 4.584 11 H 0.079 0.921 12 C -0.175 4.175 13 N -0.571 5.571 14 Si 0.761 3.239 15 H -0.189 1.189 16 H -0.200 1.200 17 H -0.186 1.186 18 C -0.226 4.226 19 N -0.219 5.219 20 C -0.131 4.131 21 C -0.403 4.403 22 S 0.395 5.605 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.103 0.897 26 H 0.172 0.828 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.246 0.754 30 H 0.027 0.973 31 H 0.030 0.970 32 H 0.081 0.919 33 H 0.213 0.787 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.508 -3.971 24.051 25.231 hybrid contribution -0.089 0.183 -0.025 0.205 sum -6.597 -3.788 24.026 25.202 Atomic orbital electron populations 1.22491 0.93028 1.03463 1.04342 1.19998 0.94323 0.97310 0.83626 0.86861 1.59999 1.59018 1.09721 1.02927 1.21792 1.03362 0.95287 0.87046 1.21271 0.77777 0.87510 0.84959 1.90646 1.52358 1.18217 1.85420 1.45997 1.65675 1.14709 1.09300 1.19061 0.93705 0.92613 0.83745 1.21314 1.45553 0.97599 0.93890 0.92132 1.25601 0.94604 1.01957 0.95299 1.69979 1.47690 1.37466 1.01957 0.85862 0.79133 0.80220 0.78693 1.18882 1.19956 1.18593 1.27183 1.01721 0.95064 0.98636 1.66233 1.13875 1.40225 1.01584 1.22177 1.02183 0.89429 0.99293 1.27495 1.10041 1.02008 1.00776 1.84158 1.56210 1.08122 1.12032 0.91712 0.90673 0.89673 0.82786 0.88475 0.86024 0.75445 0.97271 0.96992 0.91875 0.78691 0.78003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.14 71.98 0.66 -1.76 16 2 C 0.16 3.03 3.10 44.17 0.14 3.17 16 3 H 0.11 2.06 7.80 -2.39 -0.02 2.04 16 4 N -0.68 -15.93 5.66 -499.48 -2.83 -18.75 16 5 C 0.06 1.28 5.96 85.56 0.51 1.79 16 6 C 0.50 17.42 7.87 87.66 0.69 18.11 16 7 O -0.59 -25.60 16.20 -3.03 -0.05 -25.65 16 8 N -0.71 -26.92 5.55 -466.79 -2.59 -29.51 16 9 C 0.23 11.25 4.50 85.63 0.38 11.64 16 10 C -0.55 -29.79 9.83 25.60 0.25 -29.54 16 11 H 0.06 3.45 7.84 -2.91 -0.02 3.43 16 12 C 0.03 1.44 5.47 84.65 0.46 1.90 16 13 N -0.93 -55.48 13.96 21.45 0.30 -55.18 16 14 Si 0.94 43.98 27.47 68.60 1.88 45.86 16 15 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.26 -12.24 6.54 99.48 0.65 -11.59 16 18 C 0.05 1.14 6.32 88.52 0.56 1.70 16 19 N -0.50 -11.78 10.54 -191.44 -2.02 -13.79 16 20 C 0.02 0.37 11.35 83.66 0.95 1.32 16 21 C -0.26 -4.30 11.37 66.78 0.76 -3.54 16 22 S 0.14 2.76 22.96 -56.49 -1.30 1.46 16 23 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 0.97 7.45 -2.39 -0.02 0.95 16 26 H 0.35 8.44 8.17 -89.69 -0.73 7.70 16 27 H 0.10 1.58 7.44 -2.39 -0.02 1.56 16 28 H 0.12 2.36 8.05 -2.39 -0.02 2.34 16 29 H 0.41 13.35 8.32 -92.71 -0.77 12.58 16 30 H 0.01 0.48 7.20 -2.39 -0.02 0.47 16 31 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.20 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.20 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -71.39 308.54 -1.66 -73.05 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -0.43 Total: 17.73 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.36 Total: 4.79 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -7.14 Total: -117.24 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.30 Total: 1.46 kcal Total: -71.39 -1.66 -73.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070733148.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.519 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds