Wall clock time and date at job start Mon Mar 30 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99543 * 2 1 4 4 C 1.53006 * 109.46918 * 180.02562 * 3 2 1 5 5 N 1.46490 * 109.47299 * 64.99628 * 4 3 2 6 6 C 1.46496 * 120.00486 * 269.99803 * 5 4 3 7 7 C 1.50701 * 109.47351 * 270.00663 * 6 5 4 8 8 H 1.07995 * 119.99682 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99668 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00428 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99456 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47218 * 89.99871 * 11 9 7 13 13 H 1.48503 * 109.46940 * 209.99672 * 11 9 7 14 14 H 1.48498 * 109.47015 * 329.99488 * 11 9 7 15 15 C 1.37987 * 120.00038 * 90.00429 * 5 4 3 16 16 C 1.36486 * 125.59820 * 180.02562 * 15 5 4 17 17 C 1.39655 * 107.19287 * 179.97438 * 16 15 5 18 18 C 1.38068 * 106.72379 * 359.97438 * 17 16 15 19 19 C 1.41439 * 126.02078 * 180.02562 * 18 17 16 20 20 O 1.21719 * 120.00084 * 359.97438 * 19 18 17 21 21 O 1.35004 * 119.99636 * 179.97438 * 19 18 17 22 22 O 1.34081 * 125.59768 * 359.96759 * 15 5 4 23 23 H 1.08994 * 109.47100 * 60.00271 * 1 2 3 24 24 H 1.09005 * 109.46308 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47174 * 299.99687 * 1 2 3 26 26 H 1.08999 * 109.47439 * 60.00291 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99766 * 3 2 1 28 28 H 1.09001 * 109.46860 * 304.99649 * 4 3 2 29 29 H 1.09005 * 109.46976 * 184.99940 * 4 3 2 30 30 H 1.09008 * 109.46865 * 30.00440 * 6 5 4 31 31 H 1.09003 * 109.47827 * 149.99780 * 6 5 4 32 32 H 0.96996 * 120.00255 * 180.02562 * 10 9 7 33 33 H 1.07992 * 126.40190 * 0.23477 * 16 15 5 34 34 H 1.08002 * 126.63297 * 179.97438 * 17 16 15 35 35 H 0.96697 * 113.99811 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 4.1054 -0.8919 -1.3426 7 6 5.5011 -1.2976 -0.9447 8 1 6.2198 -0.5456 -0.6542 9 6 5.8605 -2.6287 -0.9515 10 7 4.9852 -3.5444 -1.3047 11 14 7.5909 -3.1314 -0.4588 12 1 7.6357 -3.3831 1.0040 13 1 7.9727 -4.3687 -1.1859 14 1 8.5397 -2.0422 -0.8031 15 6 4.2684 1.3521 -2.3472 16 6 4.6856 0.8972 -3.5645 17 6 4.8673 2.0144 -4.3825 18 6 4.5485 3.1208 -3.6206 19 6 4.5907 4.4674 -4.0511 20 8 4.9331 4.7323 -5.1887 21 8 4.2512 5.4590 -3.2002 22 8 4.1885 2.6899 -2.3899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5684 0.8410 29 1 3.9785 2.1767 0.0889 30 1 3.3854 -1.3629 -0.6733 31 1 3.9122 -1.2114 -2.3667 32 1 5.2379 -4.4809 -1.3091 33 1 4.8416 -0.1341 -3.8442 34 1 5.1940 2.0131 -5.4119 35 1 4.3106 6.3445 -3.5843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071231919.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:58 Heat of formation + Delta-G solvation = -113.532080 kcal Electronic energy + Delta-G solvation = -20735.670076 eV Core-core repulsion = 17315.065609 eV Total energy + Delta-G solvation = -3420.604468 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.09341 -39.63375 -37.97893 -36.14659 -35.85560 -32.87172 -32.52990 -30.31109 -28.86964 -26.96957 -25.93917 -23.77735 -23.17823 -21.72529 -20.57404 -19.69984 -18.06407 -17.43254 -16.78436 -16.54648 -16.14139 -15.97916 -15.57519 -14.96891 -14.80654 -14.50665 -13.97528 -13.45817 -12.88882 -12.74368 -12.48868 -12.46225 -12.24179 -11.99804 -11.58463 -11.40271 -11.31382 -11.04478 -10.97371 -10.63665 -10.53674 -10.26968 -10.06621 -9.53123 -9.49512 -9.01813 -8.57084 -6.75511 -6.15034 -4.25704 1.31481 2.70071 3.00729 3.23291 3.30631 3.34793 3.46168 3.55144 3.98600 4.15242 4.34644 5.15623 5.23570 5.29106 5.38608 5.42956 5.51626 5.52266 5.61484 5.77460 5.80595 6.00794 6.12242 6.13298 6.39239 6.56145 6.79014 6.89839 7.15797 7.29780 7.35414 7.71116 7.93170 8.02484 8.03326 8.16992 8.80277 9.40806 10.88431 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.006443 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.150243 B = 4344.804387 C = 5794.780984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.374 6.374 3 C 0.044 3.956 4 C 0.117 3.883 5 N -0.549 5.549 6 C 0.261 3.739 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.066 3.934 10 N -0.890 5.890 11 Si 0.898 3.102 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.364 3.636 16 C -0.308 4.308 17 C -0.026 4.026 18 C -0.184 4.184 19 C 0.571 3.429 20 O -0.531 6.531 21 O -0.509 6.509 22 O -0.189 6.189 23 H 0.036 0.964 24 H 0.085 0.915 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.266 0.734 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 10.473 0.936 12.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.292 6.292 3 C -0.034 4.034 4 C -0.007 4.007 5 N -0.264 5.264 6 C 0.144 3.856 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.528 5.528 11 Si 0.726 3.274 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.201 3.799 16 C -0.333 4.333 17 C -0.047 4.047 18 C -0.232 4.232 19 C 0.422 3.578 20 O -0.426 6.426 21 O -0.319 6.319 22 O -0.084 6.084 23 H 0.055 0.945 24 H 0.103 0.897 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -6.064 9.901 1.174 11.669 hybrid contribution 0.757 0.344 0.052 0.833 sum -5.307 10.245 1.225 11.602 Atomic orbital electron populations 1.22701 0.81852 1.02611 0.99258 1.88058 1.18934 1.27024 1.95213 1.23094 0.94991 0.85342 0.99975 1.21576 0.91534 0.99348 0.88230 1.46826 1.65973 1.07203 1.06399 1.19607 0.97616 0.69073 0.99298 1.21517 0.97197 0.92515 1.46781 0.92052 1.24910 0.97659 0.96218 0.94901 1.69923 1.34455 1.01265 1.47161 0.86488 0.84188 0.78165 0.78591 1.20531 1.21017 1.19767 1.19434 0.91190 0.79296 0.90029 1.21042 1.19127 1.00806 0.92341 1.21944 0.93278 0.90011 0.99471 1.18923 1.27015 0.91846 0.85443 1.17505 0.73968 0.83780 0.82556 1.90958 1.48317 1.83624 1.19659 1.85151 1.81990 1.19489 1.45220 1.83967 1.71440 1.20141 1.32874 0.94536 0.89687 0.94604 0.92769 0.93460 0.88394 0.89730 0.92276 0.94295 0.92464 0.82134 0.82660 0.74116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.26 9.53 -35.23 -0.34 -6.60 16 3 C 0.04 0.65 6.28 37.16 0.23 0.88 16 4 C 0.12 1.94 5.97 -4.04 -0.02 1.92 16 5 N -0.55 -11.07 2.51 -175.89 -0.44 -11.51 16 6 C 0.26 6.18 4.95 -5.19 -0.03 6.15 16 7 C -0.54 -14.04 9.39 -34.44 -0.32 -14.37 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 11 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 C 0.36 7.24 7.59 -15.41 -0.12 7.12 16 16 C -0.31 -6.02 9.92 -39.68 -0.39 -6.41 16 17 C -0.03 -0.47 10.57 -39.12 -0.41 -0.88 16 18 C -0.18 -3.35 6.99 -38.43 -0.27 -3.62 16 19 C 0.57 9.50 8.08 31.95 0.26 9.76 16 20 O -0.53 -9.59 17.52 -19.43 -0.34 -9.93 16 21 O -0.51 -6.85 13.53 -44.13 -0.60 -7.45 16 22 O -0.19 -3.59 10.09 -0.08 0.00 -3.59 16 23 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.10 1.66 8.07 -51.93 -0.42 1.24 16 29 H 0.08 1.26 7.70 -51.93 -0.40 0.86 16 30 H 0.06 1.49 7.12 -51.92 -0.37 1.12 16 31 H 0.04 0.98 6.77 -51.93 -0.35 0.63 16 32 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.16 3.23 7.18 -52.49 -0.38 2.86 16 34 H 0.16 2.39 8.06 -52.49 -0.42 1.97 16 35 H 0.40 3.22 8.98 45.56 0.41 3.63 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -30.65 314.24 -4.91 -35.56 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -3.59 Total: 3.30 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -0.06 Total: 3.73 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.30 Total: -35.37 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -1.27 Total: -27.56 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.65 -4.91 -35.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231919.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.968 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds