Wall clock time and date at job start Mon Mar 30 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99543 * 2 1 4 4 C 1.53006 * 109.46918 * 180.02562 * 3 2 1 5 5 N 1.46490 * 109.47299 * 64.99628 * 4 3 2 6 6 C 1.46496 * 120.00486 * 269.99803 * 5 4 3 7 7 C 1.50701 * 109.47351 * 270.00663 * 6 5 4 8 8 H 1.07995 * 119.99682 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99668 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00428 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99456 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47218 * 89.99871 * 11 9 7 13 13 H 1.48503 * 109.46940 * 209.99672 * 11 9 7 14 14 H 1.48498 * 109.47015 * 329.99488 * 11 9 7 15 15 C 1.37987 * 120.00038 * 90.00429 * 5 4 3 16 16 C 1.36486 * 125.59820 * 180.02562 * 15 5 4 17 17 C 1.39655 * 107.19287 * 179.97438 * 16 15 5 18 18 C 1.38068 * 106.72379 * 359.97438 * 17 16 15 19 19 C 1.41439 * 126.02078 * 180.02562 * 18 17 16 20 20 O 1.21719 * 120.00084 * 359.97438 * 19 18 17 21 21 O 1.35004 * 119.99636 * 179.97438 * 19 18 17 22 22 O 1.34081 * 125.59768 * 359.96759 * 15 5 4 23 23 H 1.08994 * 109.47100 * 60.00271 * 1 2 3 24 24 H 1.09005 * 109.46308 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47174 * 299.99687 * 1 2 3 26 26 H 1.08999 * 109.47439 * 60.00291 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99766 * 3 2 1 28 28 H 1.09001 * 109.46860 * 304.99649 * 4 3 2 29 29 H 1.09005 * 109.46976 * 184.99940 * 4 3 2 30 30 H 1.09008 * 109.46865 * 30.00440 * 6 5 4 31 31 H 1.09003 * 109.47827 * 149.99780 * 6 5 4 32 32 H 0.96996 * 120.00255 * 180.02562 * 10 9 7 33 33 H 1.07992 * 126.40190 * 0.23477 * 16 15 5 34 34 H 1.08002 * 126.63297 * 179.97438 * 17 16 15 35 35 H 0.96697 * 113.99811 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2526 6 6 4.1054 -0.8919 -1.3426 7 6 5.5011 -1.2976 -0.9447 8 1 6.2198 -0.5456 -0.6542 9 6 5.8605 -2.6287 -0.9515 10 7 4.9852 -3.5444 -1.3047 11 14 7.5909 -3.1314 -0.4588 12 1 7.6357 -3.3831 1.0040 13 1 7.9727 -4.3687 -1.1859 14 1 8.5397 -2.0422 -0.8031 15 6 4.2684 1.3521 -2.3472 16 6 4.6856 0.8972 -3.5645 17 6 4.8673 2.0144 -4.3825 18 6 4.5485 3.1208 -3.6206 19 6 4.5907 4.4674 -4.0511 20 8 4.9331 4.7323 -5.1887 21 8 4.2512 5.4590 -3.2002 22 8 4.1885 2.6899 -2.3899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0278 -0.0005 25 1 -0.3633 0.5137 0.8899 26 1 1.6886 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8514 0.5684 0.8410 29 1 3.9785 2.1767 0.0889 30 1 3.3854 -1.3629 -0.6733 31 1 3.9122 -1.2114 -2.3667 32 1 5.2379 -4.4809 -1.3091 33 1 4.8416 -0.1341 -3.8442 34 1 5.1940 2.0131 -5.4119 35 1 4.3106 6.3445 -3.5843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071231919.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:57 Heat of formation + Delta-G solvation = -134.203767 kcal Electronic energy + Delta-G solvation = -20736.566468 eV Core-core repulsion = 17315.065609 eV Total energy + Delta-G solvation = -3421.500859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.56814 -40.92068 -39.24479 -37.61806 -37.08153 -34.78889 -34.04513 -31.64487 -30.51869 -28.53973 -27.11747 -25.29251 -24.80918 -23.06986 -22.09013 -21.15200 -19.42120 -18.81427 -18.57112 -17.91337 -17.62823 -17.24126 -16.96939 -16.53060 -16.15805 -15.76934 -15.55247 -14.71740 -14.55084 -14.22076 -14.01932 -13.87436 -13.61760 -13.53185 -13.03511 -12.81445 -12.73728 -12.60174 -12.51885 -12.18063 -12.02825 -11.92049 -11.81707 -11.09159 -10.69821 -10.62320 -10.55315 -8.42660 -8.05065 -6.35061 -0.08453 1.17719 1.41717 1.43586 1.51411 1.54607 2.06603 2.28103 2.41534 2.77899 2.90785 3.10986 3.92119 4.06616 4.07987 4.29127 4.38017 4.46193 4.52071 4.56387 4.61908 4.69980 4.82701 4.84838 4.90701 5.08927 5.29097 5.34278 5.49208 5.61053 5.73306 6.03280 6.23116 6.30706 6.50350 6.78195 6.97433 7.35432 8.85648 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.006443 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.150243 B = 4344.804387 C = 5794.780984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.050 3.950 4 C 0.112 3.888 5 N -0.559 5.559 6 C 0.284 3.716 7 C -0.550 4.550 8 H 0.055 0.945 9 C 0.020 3.980 10 N -0.921 5.921 11 Si 0.960 3.040 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.272 1.272 15 C 0.351 3.649 16 C -0.325 4.325 17 C -0.022 4.022 18 C -0.188 4.188 19 C 0.581 3.419 20 O -0.544 6.544 21 O -0.501 6.501 22 O -0.186 6.186 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.040 0.960 31 H 0.016 0.984 32 H 0.268 0.732 33 H 0.147 0.853 34 H 0.178 0.822 35 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 12.122 1.330 13.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.028 4.028 4 C -0.011 4.011 5 N -0.274 5.274 6 C 0.165 3.835 7 C -0.588 4.588 8 H 0.073 0.927 9 C -0.180 4.180 10 N -0.560 5.560 11 Si 0.785 3.215 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.197 1.197 15 C 0.189 3.811 16 C -0.350 4.350 17 C -0.043 4.043 18 C -0.237 4.237 19 C 0.432 3.568 20 O -0.440 6.440 21 O -0.313 6.313 22 O -0.081 6.081 23 H 0.060 0.940 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.062 0.938 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.195 0.805 35 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -5.872 11.607 1.580 13.104 hybrid contribution 0.643 -0.034 -0.106 0.653 sum -5.228 11.573 1.475 12.785 Atomic orbital electron populations 1.22872 0.79895 1.03349 1.00696 1.88007 1.21247 1.28316 1.95506 1.23067 0.93409 0.84953 1.01340 1.21798 0.93235 0.99669 0.86350 1.46588 1.66930 1.06078 1.07767 1.19029 0.96019 0.71311 0.97174 1.21748 0.98037 0.92591 1.46440 0.92691 1.25667 1.01185 0.96276 0.94868 1.70024 1.36236 1.01580 1.48182 0.85527 0.79766 0.77690 0.78513 1.19717 1.20644 1.19663 1.19409 0.91897 0.79776 0.90034 1.21047 1.20064 1.00798 0.93077 1.22156 0.92634 0.89179 1.00288 1.19377 1.26242 0.92959 0.85126 1.17242 0.73481 0.83744 0.82364 1.90962 1.48835 1.83863 1.20304 1.85095 1.81031 1.20675 1.44525 1.83956 1.71447 1.19391 1.33288 0.93965 0.89447 0.92176 0.89341 0.93839 0.89229 0.87914 0.94186 0.96569 0.92302 0.83552 0.80452 0.71109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.41 -13.69 9.53 -148.98 -1.42 -15.11 16 3 C 0.05 1.41 6.28 71.98 0.45 1.86 16 4 C 0.11 3.68 5.97 86.38 0.52 4.19 16 5 N -0.56 -22.83 2.51 -821.02 -2.06 -24.89 16 6 C 0.28 13.89 4.95 85.63 0.42 14.31 16 7 C -0.55 -29.05 9.39 25.60 0.24 -28.81 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.02 1.08 5.46 84.66 0.46 1.54 16 10 N -0.92 -51.82 13.29 21.45 0.28 -51.54 16 11 Si 0.96 42.37 29.54 68.60 2.03 44.40 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 13 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 C 0.35 14.02 7.59 83.31 0.63 14.65 16 16 C -0.32 -12.84 9.92 22.20 0.22 -12.62 16 17 C -0.02 -0.77 10.57 22.57 0.24 -0.54 16 18 C -0.19 -6.57 6.99 23.02 0.16 -6.41 16 19 C 0.58 17.89 8.08 68.61 0.55 18.44 16 20 O -0.54 -18.29 17.52 19.12 0.33 -17.96 16 21 O -0.50 -11.86 13.53 -56.55 -0.77 -12.63 16 22 O -0.19 -6.83 10.09 -6.80 -0.07 -6.90 16 23 H 0.04 0.94 8.14 -2.39 -0.02 0.93 16 24 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 3.05 8.07 -2.39 -0.02 3.03 16 29 H 0.10 2.93 7.70 -2.38 -0.02 2.92 16 30 H 0.04 2.11 7.12 -2.38 -0.02 2.09 16 31 H 0.02 0.86 6.77 -2.39 -0.02 0.84 16 32 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.15 6.16 7.18 -2.91 -0.02 6.14 16 34 H 0.18 5.19 8.06 -2.91 -0.02 5.16 16 35 H 0.43 5.29 8.98 -74.06 -0.67 4.63 16 Total: -1.00 -65.22 314.24 3.93 -61.28 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.45 Total: 14.79 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 5.15 Total: 8.55 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.77 Total: -76.43 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -1.92 Total: -52.60 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -65.22 3.93 -61.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071231919.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.921 kcal (2) G-P(sol) polarization free energy of solvation -65.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds