Wall clock time and date at job start Mon Mar 30 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46661 * 2 1 4 4 C 1.52997 * 109.46967 * 240.00153 * 2 1 3 5 5 O 1.45195 * 109.46916 * 120.00040 * 2 1 3 6 6 C 1.34635 * 117.00499 * 60.00653 * 5 2 1 7 7 O 1.21519 * 119.99488 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00408 * 179.97438 * 6 5 2 9 9 C 1.46502 * 119.99983 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47048 * 180.02562 * 9 8 6 11 11 N 1.30748 * 126.28605 * 89.97519 * 10 9 8 12 12 C 1.36357 * 105.50998 * 179.97438 * 11 10 9 13 13 C 1.41739 * 126.58829 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00003 * 359.97438 * 13 12 11 15 15 C 1.39976 * 120.00030 * 179.97438 * 13 12 11 16 16 N 1.30741 * 119.99805 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99725 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46783 * 90.00476 * 17 15 13 19 19 H 1.48505 * 109.47288 * 210.00066 * 17 15 13 20 20 H 1.48499 * 109.47474 * 330.00318 * 17 15 13 21 21 N 1.31870 * 106.82505 * 0.02562 * 12 11 10 22 22 O 1.21273 * 109.89785 * 359.97438 * 21 12 11 23 23 H 1.09005 * 109.47397 * 299.99890 * 1 2 3 24 24 H 1.09001 * 109.47764 * 60.00112 * 1 2 3 25 25 H 1.09004 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46947 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47476 * 299.99854 * 3 2 1 28 28 H 1.08998 * 109.47212 * 60.00345 * 3 2 1 29 29 H 1.08994 * 109.47079 * 299.99858 * 4 2 1 30 30 H 1.09000 * 109.47266 * 60.00087 * 4 2 1 31 31 H 1.08998 * 109.46830 * 179.97438 * 4 2 1 32 32 H 0.97000 * 120.00000 * 0.02562 * 8 6 5 33 33 H 1.08994 * 109.47204 * 60.00117 * 9 8 6 34 34 H 1.09005 * 109.47062 * 299.99586 * 9 8 6 35 35 H 0.97004 * 119.99641 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5039 8 7 2.0681 -2.6657 2.4166 9 6 1.6741 -4.0669 2.5830 10 6 2.2652 -4.6066 3.8599 11 7 1.7086 -4.5788 5.0426 12 6 2.6032 -5.1759 5.8808 13 6 2.4472 -5.3829 7.2742 14 1 1.5473 -5.0527 7.7718 15 6 3.4595 -6.0153 8.0055 16 7 4.5490 -6.4145 7.4032 17 14 3.2541 -6.2874 9.8421 18 1 2.6048 -7.6019 10.0781 19 1 4.5867 -6.2689 10.4973 20 1 2.4078 -5.2079 10.4109 21 7 3.6414 -5.5238 5.1458 22 8 3.4560 -5.2025 3.9912 23 1 -0.3634 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 -1.7488 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7208 -1.2495 32 1 2.6276 -2.2368 3.0828 33 1 2.0399 -4.6500 1.7379 34 1 0.5872 -4.1357 2.6288 35 1 5.2507 -6.8524 7.9101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073641383.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:21 Heat of formation + Delta-G solvation = -27.690428 kcal Electronic energy + Delta-G solvation = -20220.368168 eV Core-core repulsion = 16835.778825 eV Total energy + Delta-G solvation = -3384.589343 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.41642 -40.71771 -37.51498 -35.05518 -34.50466 -34.04814 -32.97922 -30.63208 -27.54909 -27.48822 -27.05434 -26.44036 -22.41287 -21.94280 -20.88421 -20.08951 -18.41007 -17.31568 -16.72635 -16.21042 -16.19487 -15.79959 -15.08767 -14.80503 -14.59658 -14.42859 -13.62707 -13.46545 -13.26749 -12.84173 -12.62720 -12.27973 -12.01787 -12.00245 -11.56740 -11.42423 -11.39392 -11.36506 -10.99255 -10.50825 -10.42587 -10.39868 -10.22459 -10.09059 -9.41932 -9.29540 -9.09306 -8.29066 -6.71121 -4.73276 1.94444 2.84512 2.88737 3.00139 3.07971 3.13020 3.92321 3.93027 4.02753 4.27704 4.58930 4.63366 4.77517 5.04522 5.22801 5.31505 5.39518 5.40901 5.54396 5.60706 5.69275 5.73590 5.83752 5.90470 6.11159 6.17741 6.34026 6.46773 6.51788 6.71000 7.17900 7.46617 7.56374 8.21696 8.39123 8.40765 8.75851 10.18917 10.31860 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044266 B = 0.003376 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.389071 B = 8292.088711 C = 8439.312867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.656 3.344 7 O -0.571 6.571 8 N -0.702 5.702 9 C 0.250 3.750 10 C 0.088 3.912 11 N -0.496 5.496 12 C 0.287 3.713 13 C -0.433 4.433 14 H 0.093 0.907 15 C 0.069 3.931 16 N -0.771 5.771 17 Si 0.926 3.074 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.261 1.261 21 N -0.415 5.415 22 O 0.028 5.972 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.411 0.589 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 11.340 -12.328 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.409 3.591 7 O -0.461 6.461 8 N -0.363 5.363 9 C 0.126 3.874 10 C -0.134 4.134 11 N -0.239 5.239 12 C 0.036 3.964 13 C -0.474 4.474 14 H 0.111 0.889 15 C -0.152 4.152 16 N -0.400 5.400 17 Si 0.750 3.250 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.185 1.185 21 N -0.142 5.142 22 O -0.015 6.015 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.247 0.753 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.554 10.739 -12.305 16.714 hybrid contribution 0.206 0.050 1.052 1.073 sum -3.348 10.789 -11.253 15.945 Atomic orbital electron populations 1.22524 0.94001 1.05213 1.02369 1.22052 0.94395 0.91473 0.82188 1.21859 1.02289 0.92634 1.03023 1.22520 1.01611 1.03617 0.96338 1.86316 1.71569 1.23612 1.46351 1.17896 0.78798 0.80450 0.81980 1.90891 1.41334 1.70480 1.43387 1.44707 1.55483 1.12260 1.23848 1.19148 0.99618 0.78538 0.90046 1.27709 0.88174 1.01289 0.96236 1.72209 1.30371 1.21759 0.99586 1.22478 0.83982 0.93278 0.96639 1.18449 1.04487 1.36476 0.87949 0.88853 1.25861 0.94161 0.93783 1.01394 1.69857 1.05022 1.27348 1.37747 0.86024 0.78471 0.79657 0.80859 1.19386 1.20180 1.18471 1.75630 1.22495 1.28436 0.87598 1.85246 1.32760 1.56653 1.26805 0.92127 0.91296 0.89211 0.91461 0.90252 0.91446 0.89211 0.91294 0.92144 0.75346 0.88670 0.87960 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 8.37 37.16 0.31 -1.60 16 2 C 0.14 1.47 1.13 -90.62 -0.10 1.36 16 3 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 4 C -0.18 -1.88 8.37 37.16 0.31 -1.57 16 5 O -0.36 -4.91 9.94 -40.31 -0.40 -5.31 16 6 C 0.66 9.77 8.06 54.05 0.44 10.21 16 7 O -0.57 -9.16 11.88 -19.29 -0.23 -9.39 16 8 N -0.70 -10.57 5.55 -66.47 -0.37 -10.94 16 9 C 0.25 4.01 6.30 -5.19 -0.03 3.97 16 10 C 0.09 1.89 7.84 -12.92 -0.10 1.79 16 11 N -0.50 -12.40 11.62 -10.83 -0.13 -12.53 16 12 C 0.29 8.11 7.70 -156.99 -1.21 6.90 16 13 C -0.43 -12.07 9.52 -37.59 -0.36 -12.43 16 14 H 0.09 2.47 7.85 -52.48 -0.41 2.06 16 15 C 0.07 1.83 5.49 -17.37 -0.10 1.73 16 16 N -0.77 -21.35 11.98 55.55 0.67 -20.68 16 17 Si 0.93 19.24 29.56 -169.99 -5.02 14.22 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 21 N -0.42 -11.76 10.49 30.27 0.32 -11.45 16 22 O 0.03 0.68 11.28 17.72 0.20 0.88 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.09 1.14 5.88 -51.93 -0.31 0.83 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.41 6.09 8.57 -40.82 -0.35 5.74 16 33 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.28 7.00 8.29 -40.82 -0.34 6.66 16 LS Contribution 305.00 15.07 4.60 4.60 Total: -1.00 -31.89 305.00 -5.19 -37.09 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.31 Total: 3.96 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -0.51 Total: 9.55 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.49 Total: -55.60 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.43 Total: -13.82 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.89 -5.19 -37.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641383.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.397 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds