Wall clock time and date at job start Mon Mar 30 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46661 * 2 1 4 4 C 1.52997 * 109.46967 * 240.00153 * 2 1 3 5 5 O 1.45195 * 109.46916 * 120.00040 * 2 1 3 6 6 C 1.34635 * 117.00499 * 60.00653 * 5 2 1 7 7 O 1.21519 * 119.99488 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00408 * 179.97438 * 6 5 2 9 9 C 1.46502 * 119.99983 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47048 * 180.02562 * 9 8 6 11 11 N 1.30748 * 126.28605 * 89.97519 * 10 9 8 12 12 C 1.36357 * 105.50998 * 179.97438 * 11 10 9 13 13 C 1.41739 * 126.58829 * 180.02562 * 12 11 10 14 14 H 1.08005 * 120.00003 * 359.97438 * 13 12 11 15 15 C 1.39976 * 120.00030 * 179.97438 * 13 12 11 16 16 N 1.30741 * 119.99805 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99725 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46783 * 90.00476 * 17 15 13 19 19 H 1.48505 * 109.47288 * 210.00066 * 17 15 13 20 20 H 1.48499 * 109.47474 * 330.00318 * 17 15 13 21 21 N 1.31870 * 106.82505 * 0.02562 * 12 11 10 22 22 O 1.21273 * 109.89785 * 359.97438 * 21 12 11 23 23 H 1.09005 * 109.47397 * 299.99890 * 1 2 3 24 24 H 1.09001 * 109.47764 * 60.00112 * 1 2 3 25 25 H 1.09004 * 109.47165 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46947 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47476 * 299.99854 * 3 2 1 28 28 H 1.08998 * 109.47212 * 60.00345 * 3 2 1 29 29 H 1.08994 * 109.47079 * 299.99858 * 4 2 1 30 30 H 1.09000 * 109.47266 * 60.00087 * 4 2 1 31 31 H 1.08998 * 109.46830 * 179.97438 * 4 2 1 32 32 H 0.97000 * 120.00000 * 0.02562 * 8 6 5 33 33 H 1.08994 * 109.47204 * 60.00117 * 9 8 6 34 34 H 1.09005 * 109.47062 * 299.99586 * 9 8 6 35 35 H 0.97004 * 119.99641 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5095 0.5039 8 7 2.0681 -2.6657 2.4166 9 6 1.6741 -4.0669 2.5830 10 6 2.2652 -4.6066 3.8599 11 7 1.7086 -4.5788 5.0426 12 6 2.6032 -5.1759 5.8808 13 6 2.4472 -5.3829 7.2742 14 1 1.5473 -5.0527 7.7718 15 6 3.4595 -6.0153 8.0055 16 7 4.5490 -6.4145 7.4032 17 14 3.2541 -6.2874 9.8421 18 1 2.6048 -7.6019 10.0781 19 1 4.5867 -6.2689 10.4973 20 1 2.4078 -5.2079 10.4109 21 7 3.6414 -5.5238 5.1458 22 8 3.4560 -5.2025 3.9912 23 1 -0.3634 0.5138 0.8900 24 1 -0.3635 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 -1.7488 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7208 -1.2495 32 1 2.6276 -2.2368 3.0828 33 1 2.0399 -4.6500 1.7379 34 1 0.5872 -4.1357 2.6288 35 1 5.2507 -6.8524 7.9101 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073641383.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:21 Heat of formation + Delta-G solvation = -52.279882 kcal Electronic energy + Delta-G solvation = -20221.434447 eV Core-core repulsion = 16835.778825 eV Total energy + Delta-G solvation = -3385.655622 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.41023 -41.81258 -38.60722 -36.58487 -36.28866 -35.16053 -34.71552 -32.45122 -28.85328 -28.29540 -28.27851 -28.20114 -24.01353 -23.55582 -22.60075 -21.20066 -19.71308 -18.98635 -18.33182 -17.82556 -17.55437 -17.31402 -16.61286 -16.21007 -15.81473 -15.49343 -15.04699 -14.81985 -14.41523 -14.31512 -13.31364 -13.27693 -13.13098 -13.06312 -13.00253 -12.85561 -12.82058 -12.46938 -12.34597 -12.31088 -12.25493 -11.97232 -11.38354 -11.35662 -11.26006 -11.10750 -10.37584 -10.29794 -8.67610 -6.83269 0.51050 1.26125 1.38548 1.42633 1.55763 1.71382 2.00377 2.19118 2.40007 3.12093 3.19979 3.35969 3.80149 3.85428 3.99973 4.24130 4.39977 4.47819 4.60746 4.68150 4.77249 4.82798 4.89656 4.91635 4.93417 4.96329 5.18492 5.20317 5.35174 5.39435 5.52996 5.60977 6.13958 6.25736 6.37227 6.71804 7.24108 8.24971 8.37375 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.044266 B = 0.003376 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.389071 B = 8292.088711 C = 8439.312867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.659 3.341 7 O -0.582 6.582 8 N -0.703 5.703 9 C 0.259 3.741 10 C 0.119 3.881 11 N -0.519 5.519 12 C 0.260 3.740 13 C -0.468 4.468 14 H 0.096 0.904 15 C 0.024 3.976 16 N -0.810 5.810 17 Si 1.009 2.991 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.253 1.253 21 N -0.452 5.452 22 O 0.024 5.976 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.412 0.588 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 12.466 -12.635 18.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.284 6.284 6 C 0.412 3.588 7 O -0.473 6.473 8 N -0.364 5.364 9 C 0.135 3.865 10 C -0.104 4.104 11 N -0.261 5.261 12 C 0.009 3.991 13 C -0.508 4.508 14 H 0.114 0.886 15 C -0.194 4.194 16 N -0.439 5.439 17 Si 0.828 3.172 18 H -0.184 1.184 19 H -0.190 1.190 20 H -0.176 1.176 21 N -0.181 5.181 22 O -0.018 6.018 23 H 0.078 0.922 24 H 0.113 0.887 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.248 0.752 33 H 0.137 0.863 34 H 0.132 0.868 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.028 11.892 -12.650 17.824 hybrid contribution 0.308 -0.215 0.960 1.031 sum -3.721 11.676 -11.690 16.936 Atomic orbital electron populations 1.22488 0.93750 1.03888 1.03637 1.22506 0.94827 0.92697 0.81402 1.21897 1.02393 0.90691 1.04354 1.22482 1.01639 1.02390 0.97199 1.86335 1.71595 1.22661 1.47810 1.17858 0.78486 0.80927 0.81492 1.90899 1.41784 1.70919 1.43691 1.44553 1.55751 1.11861 1.24254 1.19305 0.99888 0.79362 0.87922 1.28547 0.86460 0.98318 0.97037 1.72191 1.30551 1.22835 1.00528 1.22919 0.84724 0.93924 0.97564 1.18893 1.05529 1.37895 0.88527 0.88566 1.26978 0.93109 0.92469 1.06852 1.69952 1.05989 1.27739 1.40200 0.84805 0.78959 0.79906 0.73555 1.18397 1.19001 1.17604 1.75604 1.23550 1.30170 0.88751 1.85163 1.33869 1.57195 1.25554 0.92188 0.88735 0.91720 0.91349 0.87584 0.91442 0.91664 0.88771 0.92046 0.75247 0.86299 0.86780 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.45 8.37 71.98 0.60 -2.84 16 2 C 0.12 2.41 1.13 -10.79 -0.01 2.39 16 3 C -0.14 -1.85 8.85 71.98 0.64 -1.21 16 4 C -0.18 -3.37 8.37 71.98 0.60 -2.77 16 5 O -0.37 -9.56 9.94 -55.45 -0.55 -10.11 16 6 C 0.66 19.03 8.06 129.79 1.05 20.07 16 7 O -0.58 -18.18 11.88 19.78 0.24 -17.94 16 8 N -0.70 -20.56 5.55 -594.61 -3.30 -23.87 16 9 C 0.26 8.00 6.30 85.63 0.54 8.54 16 10 C 0.12 5.09 7.84 88.33 0.69 5.78 16 11 N -0.52 -26.32 11.62 -304.63 -3.54 -29.86 16 12 C 0.26 15.04 7.70 134.75 1.04 16.08 16 13 C -0.47 -26.63 9.52 23.56 0.22 -26.41 16 14 H 0.10 5.19 7.85 -2.91 -0.02 5.17 16 15 C 0.02 1.25 5.49 85.28 0.47 1.72 16 16 N -0.81 -45.51 11.98 21.83 0.26 -45.25 16 17 Si 1.01 39.17 29.56 68.60 2.03 41.19 16 18 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 19 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 20 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 21 N -0.45 -26.31 10.49 -60.21 -0.63 -26.94 16 22 O 0.02 1.17 11.28 73.48 0.83 2.00 16 23 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.59 5.88 -2.39 -0.01 1.57 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.57 5.88 -2.39 -0.01 1.56 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.41 12.02 8.57 -92.71 -0.79 11.23 16 33 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.11 3.34 8.14 -2.38 -0.02 3.32 16 35 H 0.29 14.52 8.29 -92.71 -0.77 13.76 16 Total: -1.00 -70.40 305.00 1.50 -68.90 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.33 Total: 20.51 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 5.84 Total: 21.36 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -7.21 Total: -125.91 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: 0.51 Total: -26.05 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 2.03 Total: 41.19 kcal Total: -70.40 1.50 -68.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641383.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.622 kcal (2) G-P(sol) polarization free energy of solvation -70.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds