Wall clock time and date at job start Mon Mar 30 2020 05:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47243 * 257.06968 * 3 2 1 5 5 C 1.36832 * 120.00106 * 262.95378 * 4 3 2 6 6 H 1.07996 * 120.00312 * 202.53501 * 5 4 3 7 7 C 1.38909 * 119.99550 * 22.25377 * 5 4 3 8 8 N 1.31475 * 120.00379 * 7.85469 * 7 5 4 9 9 Si 1.86802 * 119.99617 * 187.85190 * 7 5 4 10 10 H 1.48497 * 109.46871 * 90.00223 * 9 7 5 11 11 H 1.48500 * 109.47116 * 210.00121 * 9 7 5 12 12 H 1.48497 * 109.47535 * 330.00243 * 9 7 5 13 13 C 1.37870 * 120.00119 * 82.95707 * 4 3 2 14 14 N 1.32726 * 120.90627 * 273.71219 * 13 4 3 15 15 C 1.32288 * 121.46557 * 179.97438 * 14 13 4 16 16 N 1.31224 * 122.99822 * 359.97438 * 15 14 13 17 17 C 1.34124 * 120.50840 * 0.02562 * 16 15 14 18 18 C 1.40214 * 121.84266 * 179.97438 * 17 16 15 19 19 C 1.36167 * 119.82470 * 179.97438 * 18 17 16 20 20 C 1.39863 * 120.96294 * 0.02562 * 19 18 17 21 21 N 1.39696 * 119.70493 * 180.02562 * 20 19 18 22 22 C 1.38054 * 120.59203 * 359.97438 * 20 19 18 23 23 C 1.39826 * 119.34494 * 359.74332 * 22 20 19 24 24 H 1.09003 * 109.47187 * 137.06568 * 3 2 1 25 25 H 1.09007 * 109.46899 * 17.06951 * 3 2 1 26 26 H 0.96995 * 120.00184 * 179.97438 * 8 7 5 27 27 H 1.07995 * 118.50199 * 179.97438 * 15 14 13 28 28 H 1.07995 * 120.08884 * 0.02562 * 18 17 16 29 29 H 1.08005 * 119.51784 * 180.02562 * 19 18 17 30 30 H 0.97003 * 120.00042 * 359.97438 * 21 20 19 31 31 H 0.97000 * 120.00499 * 179.97438 * 21 20 19 32 32 H 1.07996 * 120.32761 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.3099 1.3461 5 6 3.4607 1.5898 1.6644 6 1 4.1396 1.7698 2.4849 7 6 2.9622 2.6573 0.9285 8 7 2.0245 2.4550 0.0294 9 14 3.6241 4.3802 1.2164 10 1 4.7809 4.6226 0.3174 11 1 2.5584 5.3741 0.9308 12 1 4.0594 4.5136 2.6299 13 6 3.1884 -0.6886 2.2923 14 7 2.1451 -1.0117 3.0464 15 6 2.2211 -1.9681 3.9572 16 7 3.3150 -2.6580 4.1794 17 6 4.4291 -2.4140 3.4736 18 6 5.6132 -3.1336 3.6882 19 6 6.7205 -2.8520 2.9475 20 6 6.6974 -1.8511 1.9708 21 7 7.8486 -1.5844 1.2256 22 6 5.5470 -1.1251 1.7358 23 6 4.3972 -1.4027 2.4816 24 1 2.9710 0.7532 -0.7000 25 1 2.9717 -0.9817 -0.3017 26 1 1.6762 3.2005 -0.4842 27 1 1.3428 -2.1914 4.5446 28 1 5.6467 -3.9097 4.4384 29 1 7.6298 -3.4097 3.1166 30 1 8.6592 -2.0922 1.3869 31 1 7.8373 -0.8915 0.5469 32 1 5.5338 -0.3535 0.9803 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081589239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:47 Heat of formation + Delta-G solvation = 109.816652 kcal Electronic energy + Delta-G solvation = -19803.599216 eV Core-core repulsion = 16764.574298 eV Total energy + Delta-G solvation = -3039.024918 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.097 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.01116 -39.03313 -38.39655 -36.41000 -35.09863 -34.25306 -32.51426 -31.90322 -29.44055 -28.87006 -26.46826 -24.49245 -24.45170 -22.44604 -19.78649 -19.39554 -18.97253 -18.53079 -17.58908 -17.27625 -16.31127 -15.91407 -15.85448 -15.47291 -15.17381 -15.00172 -14.63930 -14.30009 -13.90214 -13.71716 -13.62282 -13.25709 -13.04906 -12.79242 -12.42079 -12.33075 -12.14945 -11.95450 -11.76780 -11.72232 -10.94625 -10.83547 -10.08699 -9.78788 -9.31167 -8.14348 -8.00679 -5.61135 -0.52968 0.06476 1.11690 1.50215 1.53669 1.60969 2.09800 2.25185 2.43802 2.54520 3.04524 3.10934 3.21717 3.32512 3.39606 3.67978 3.85196 3.96527 4.15948 4.24866 4.53494 4.68488 4.76732 5.02255 5.13849 5.15561 5.22630 5.37251 5.51328 5.66255 5.80142 6.17851 6.37000 6.65159 6.89177 7.13408 7.24300 7.42865 7.60450 7.93576 9.01092 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.007698 C = 0.006272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.073685 B = 3636.504762 C = 4463.121046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C 0.260 3.740 3 C 0.268 3.732 4 N -0.533 5.533 5 C -0.270 4.270 6 H 0.077 0.923 7 C -0.022 4.022 8 N -0.924 5.924 9 Si 0.981 3.019 10 H -0.265 1.265 11 H -0.302 1.302 12 H -0.279 1.279 13 C 0.445 3.555 14 N -0.579 5.579 15 C 0.266 3.734 16 N -0.518 5.518 17 C 0.089 3.911 18 C -0.070 4.070 19 C -0.120 4.120 20 C 0.215 3.785 21 N -0.858 5.858 22 C -0.172 4.172 23 C -0.118 4.118 24 H 0.132 0.868 25 H 0.091 0.909 26 H 0.259 0.741 27 H 0.201 0.799 28 H 0.158 0.842 29 H 0.173 0.827 30 H 0.412 0.588 31 H 0.407 0.593 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.726 -9.715 1.724 19.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.220 5.220 2 C -0.058 4.058 3 C 0.140 3.860 4 N -0.251 5.251 5 C -0.398 4.398 6 H 0.095 0.905 7 C -0.219 4.219 8 N -0.567 5.567 9 Si 0.808 3.192 10 H -0.190 1.190 11 H -0.229 1.229 12 H -0.204 1.204 13 C 0.196 3.804 14 N -0.297 5.297 15 C -0.024 4.024 16 N -0.233 5.233 17 C -0.040 4.040 18 C -0.090 4.090 19 C -0.144 4.144 20 C 0.108 3.892 21 N -0.397 5.397 22 C -0.200 4.200 23 C -0.127 4.127 24 H 0.149 0.851 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.217 0.783 28 H 0.175 0.825 29 H 0.190 0.810 30 H 0.243 0.757 31 H 0.237 0.763 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 14.241 -9.919 2.267 17.502 hybrid contribution 0.527 1.692 -0.398 1.817 sum 14.768 -8.226 1.869 17.008 Atomic orbital electron populations 1.80774 1.15587 1.14827 1.10838 1.30770 0.96773 0.87862 0.90386 1.18710 0.78907 1.01517 0.86912 1.41298 1.72985 1.04875 1.05976 1.19275 1.22609 0.81167 1.16796 0.90522 1.25719 0.96263 1.01530 0.98423 1.69881 1.28458 1.31878 1.26507 0.85079 0.77325 0.78672 0.78096 1.19028 1.22875 1.20414 1.19290 0.87575 0.86677 0.86854 1.68577 1.35304 1.17713 1.08081 1.24812 0.96293 0.88203 0.93111 1.68634 0.99905 1.27999 1.26726 1.19315 0.94536 0.96136 0.94038 1.20732 0.89409 0.98846 0.99963 1.20943 0.99986 0.97959 0.95471 1.17869 0.87474 0.92691 0.91153 1.42445 1.10778 1.44109 1.42366 1.20465 0.91003 1.04056 1.04436 1.19664 0.96176 0.97768 0.99043 0.85092 0.89161 0.93137 0.78305 0.82480 0.81001 0.75701 0.76295 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -29.29 18.54 20.01 0.37 -28.92 16 2 C 0.26 13.08 13.67 89.44 1.22 14.31 16 3 C 0.27 11.62 5.38 84.57 0.46 12.08 16 4 N -0.53 -24.67 1.86 -526.07 -0.98 -25.65 16 5 C -0.27 -13.40 9.66 84.07 0.81 -12.59 16 6 H 0.08 3.83 7.84 -2.91 -0.02 3.80 16 7 C -0.02 -1.10 5.16 84.91 0.44 -0.66 16 8 N -0.92 -48.88 8.99 21.66 0.19 -48.68 16 9 Si 0.98 41.31 29.56 68.60 2.03 43.34 16 10 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 11 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.45 19.74 6.09 133.98 0.82 20.56 16 14 N -0.58 -26.77 10.43 -196.66 -2.05 -28.82 16 15 C 0.27 10.42 12.22 180.91 2.21 12.63 16 16 N -0.52 -18.92 10.44 -193.84 -2.02 -20.95 16 17 C 0.09 3.03 6.62 40.13 0.27 3.29 16 18 C -0.07 -1.70 9.99 22.27 0.22 -1.48 16 19 C -0.12 -2.22 9.78 22.18 0.22 -2.00 16 20 C 0.22 4.64 6.74 38.24 0.26 4.89 16 21 N -0.86 -11.48 9.08 -51.29 -0.47 -11.95 16 22 C -0.17 -5.21 9.45 22.61 0.21 -5.00 16 23 C -0.12 -4.38 5.75 -21.19 -0.12 -4.50 16 24 H 0.13 5.77 6.27 -2.39 -0.01 5.76 16 25 H 0.09 3.25 8.10 -2.38 -0.02 3.23 16 26 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 27 H 0.20 6.49 8.06 -2.91 -0.02 6.47 16 28 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.41 2.97 8.84 -92.71 -0.82 2.15 16 31 H 0.41 5.07 8.83 -92.71 -0.82 4.25 16 32 H 0.13 4.26 7.65 -2.91 -0.02 4.24 16 Total: -1.00 -69.69 290.75 3.64 -66.04 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -0.44 Total: 14.06 kcal Atomic # 6 Polarization: 34.53 SS G_CDS: 7.01 Total: 41.53 kcal Atomic # 7 Polarization: -160.02 SS G_CDS: -4.96 Total: -164.98 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -69.69 3.64 -66.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081589239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.862 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds