Wall clock time and date at job start Mon Mar 30 2020 04:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 111.00147 * 2 1 4 4 C 1.50696 * 109.47167 * 66.04242 * 3 2 1 5 5 H 1.07997 * 120.00540 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00015 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99966 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99752 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47241 * 89.99854 * 8 6 4 10 10 H 1.48500 * 109.46983 * 209.99576 * 8 6 4 11 11 H 1.48497 * 109.47427 * 329.99800 * 8 6 4 12 12 C 1.46894 * 111.00213 * 236.04414 * 2 1 3 13 13 C 1.50704 * 109.47002 * 288.09464 * 12 2 1 14 14 C 1.37471 * 123.35121 * 104.86233 * 13 12 2 15 15 C 1.33821 * 115.09761 * 179.97438 * 14 13 12 16 16 S 1.70618 * 110.95671 * 359.97438 * 15 14 13 17 17 C 1.36654 * 123.34791 * 284.83513 * 13 12 2 18 18 C 1.46585 * 125.45705 * 0.05804 * 17 13 12 19 19 O 1.21696 * 119.99932 * 354.16810 * 18 17 13 20 20 N 1.34772 * 119.99261 * 174.17262 * 18 17 13 21 21 N 1.36605 * 119.99419 * 179.97438 * 20 18 17 22 22 H 1.08997 * 109.47079 * 189.09487 * 1 2 3 23 23 H 1.09007 * 109.46890 * 309.09556 * 1 2 3 24 24 H 1.08999 * 109.47081 * 69.09276 * 1 2 3 25 25 H 1.08997 * 109.47369 * 186.04632 * 3 2 1 26 26 H 1.09002 * 109.46613 * 306.04744 * 3 2 1 27 27 H 0.96998 * 119.99520 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47513 * 168.08752 * 12 2 1 29 29 H 1.09006 * 109.47261 * 48.08850 * 12 2 1 30 30 H 1.07994 * 122.45051 * 359.97438 * 14 13 12 31 31 H 1.07995 * 124.52164 * 179.97438 * 15 14 13 32 32 H 0.96992 * 120.00466 * 359.97438 * 20 18 17 33 33 H 1.00900 * 110.99774 * 56.04489 * 21 20 18 34 34 H 1.00903 * 110.99727 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5114 2.0487 6 6 2.0268 3.3496 1.5284 7 7 1.7134 3.9394 2.6613 8 14 2.9988 4.2766 0.2302 9 1 2.0614 4.9802 -0.6815 10 1 3.8855 5.2684 0.8901 11 1 3.8224 3.3183 -0.5499 12 6 1.9955 -0.7660 -1.1375 13 6 1.7635 -2.2365 -0.9033 14 6 0.7903 -2.9606 -1.5501 15 6 0.7301 -4.2552 -1.2168 16 16 1.9153 -4.6411 -0.0517 17 6 2.5001 -2.9830 -0.0272 18 6 3.6012 -2.4818 0.8005 19 8 3.9947 -1.3385 0.6623 20 7 4.1777 -3.2872 1.7145 21 7 5.2042 -2.8202 2.4854 22 1 -0.3633 -1.0147 0.1624 23 1 -0.3633 0.6481 0.7976 24 1 -0.3633 0.3667 -0.9600 25 1 3.0797 1.3445 -0.1082 26 1 1.5611 1.9273 -0.8309 27 1 1.9874 4.8558 2.8229 28 1 3.0644 -0.5782 -1.2385 29 1 1.4848 -0.4585 -2.0501 30 1 0.1231 -2.5170 -2.2742 31 1 0.0255 -4.9615 -1.6302 32 1 3.8639 -4.1982 1.8248 33 1 4.9308 -1.9879 2.9860 34 1 5.5323 -3.5324 3.1205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082501531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:55 Heat of formation + Delta-G solvation = 40.610926 kcal Electronic energy + Delta-G solvation = -18627.873289 eV Core-core repulsion = 15688.998585 eV Total energy + Delta-G solvation = -2938.874703 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.69356 -38.13709 -35.84925 -35.37232 -32.33805 -30.67979 -29.25942 -27.72812 -26.62762 -24.65448 -22.50959 -21.44626 -20.11069 -19.48482 -18.11451 -17.02422 -16.59765 -16.06619 -15.27867 -15.00811 -14.66402 -14.19563 -14.16390 -13.83625 -13.53227 -13.03989 -12.66790 -12.56069 -12.22270 -11.87303 -11.49175 -11.16996 -11.04743 -10.96170 -10.79085 -10.56920 -10.12325 -9.72022 -9.54357 -9.16692 -8.75433 -8.47268 -8.42657 -8.02935 -7.22178 -5.94022 -3.89189 0.60979 1.49348 1.85404 2.50163 2.94029 3.37655 3.45030 3.51421 3.53315 4.54073 4.81433 4.89506 5.09517 5.14980 5.33030 5.38894 5.46444 5.70515 5.99911 6.08418 6.23876 6.27727 6.41478 6.47832 6.72296 6.81593 6.99241 7.17299 7.44530 7.63761 7.76968 8.03869 8.21339 8.67995 8.79219 9.14005 9.68986 11.19427 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.006197 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.405574 B = 4516.970654 C = 5325.466013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.512 5.512 3 C 0.166 3.834 4 C -0.499 4.499 5 H 0.078 0.922 6 C 0.067 3.933 7 N -0.905 5.905 8 Si 0.874 3.126 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.265 1.265 12 C 0.104 3.896 13 C -0.005 4.005 14 C -0.137 4.137 15 C -0.230 4.230 16 S 0.161 5.839 17 C -0.236 4.236 18 C 0.589 3.411 19 O -0.472 6.472 20 N -0.585 5.585 21 N -0.598 5.598 22 H 0.044 0.956 23 H 0.080 0.920 24 H 0.009 0.991 25 H 0.036 0.964 26 H -0.020 1.020 27 H 0.262 0.738 28 H 0.094 0.906 29 H 0.032 0.968 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.391 0.609 33 H 0.352 0.648 34 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -20.299 -5.736 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.235 5.235 3 C 0.040 3.960 4 C -0.538 4.538 5 H 0.096 0.904 6 C -0.134 4.134 7 N -0.545 5.545 8 Si 0.702 3.298 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.189 1.189 12 C -0.026 4.026 13 C -0.020 4.020 14 C -0.169 4.169 15 C -0.367 4.367 16 S 0.428 5.572 17 C -0.359 4.359 18 C 0.373 3.627 19 O -0.343 6.343 20 N -0.332 5.332 21 N -0.225 5.225 22 H 0.063 0.937 23 H 0.099 0.901 24 H 0.028 0.972 25 H 0.054 0.946 26 H -0.003 1.003 27 H 0.071 0.929 28 H 0.112 0.888 29 H 0.050 0.950 30 H 0.161 0.839 31 H 0.183 0.817 32 H 0.227 0.773 33 H 0.168 0.832 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.662 -20.746 -5.245 21.464 hybrid contribution -1.132 1.497 -1.089 2.170 sum 0.530 -19.249 -6.335 20.271 Atomic orbital electron populations 1.22325 0.88803 1.00211 1.00189 1.61837 1.06479 1.16314 1.38879 1.20174 0.95730 0.83471 0.96609 1.21011 1.34905 0.96930 1.00910 0.90412 1.24868 0.95803 0.97386 0.95341 1.69898 1.47407 1.13149 1.24036 0.86867 0.80699 0.80003 0.82280 1.20538 1.21253 1.18931 1.20869 1.01984 0.87207 0.92546 1.19567 0.92318 0.97381 0.92734 1.19975 1.00519 0.93155 1.03300 1.25067 1.05665 1.00834 1.05118 1.82654 1.27386 1.08491 1.38702 1.24172 1.06077 0.97111 1.08494 1.16638 0.81215 0.85239 0.79609 1.90950 1.61293 1.16452 1.65632 1.44532 1.36127 1.14848 1.37719 1.60002 1.23899 1.09290 1.29289 0.93710 0.90129 0.97229 0.94637 1.00286 0.92861 0.88762 0.95025 0.83946 0.81659 0.77264 0.83220 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.25 60.06 0.56 1.23 16 2 N -0.51 -11.51 4.37 -245.82 -1.07 -12.58 16 3 C 0.17 4.34 3.78 -4.98 -0.02 4.32 16 4 C -0.50 -14.91 8.94 -34.44 -0.31 -15.21 16 5 H 0.08 2.52 7.41 -52.49 -0.39 2.13 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.91 -28.68 13.96 55.43 0.77 -27.91 16 8 Si 0.87 22.69 27.47 -169.99 -4.67 18.02 16 9 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 12 C 0.10 1.98 4.35 -4.98 -0.02 1.95 16 13 C 0.00 -0.08 4.69 -105.47 -0.49 -0.57 16 14 C -0.14 -1.74 9.75 -41.41 -0.40 -2.14 16 15 C -0.23 -2.38 10.92 29.18 0.32 -2.06 16 16 S 0.16 1.66 22.18 -107.50 -2.38 -0.72 16 17 C -0.24 -3.60 6.45 -36.79 -0.24 -3.84 16 18 C 0.59 10.20 7.84 -12.90 -0.10 10.10 16 19 O -0.47 -10.43 14.52 5.19 0.08 -10.35 16 20 N -0.59 -7.72 6.46 30.24 0.20 -7.52 16 21 N -0.60 -7.42 10.03 60.35 0.61 -6.82 16 22 H 0.04 0.80 7.47 -51.93 -0.39 0.41 16 23 H 0.08 1.82 6.66 -51.93 -0.35 1.47 16 24 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 25 H 0.04 0.98 6.92 -51.93 -0.36 0.62 16 26 H -0.02 -0.53 7.55 -51.93 -0.39 -0.92 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.09 1.95 6.50 -51.93 -0.34 1.61 16 29 H 0.03 0.55 7.90 -51.93 -0.41 0.14 16 30 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.39 3.80 7.96 -185.16 -1.47 2.33 16 33 H 0.35 4.83 9.00 -181.36 -1.63 3.20 16 34 H 0.35 2.80 9.21 -181.36 -1.67 1.13 16 LS Contribution 300.19 15.07 4.52 4.52 Total: -1.00 -35.79 300.19 -10.59 -46.38 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.83 Total: 1.28 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.81 Total: -4.30 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: 0.50 Total: -54.83 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.35 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.67 Total: 18.02 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.38 Total: -0.72 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -35.79 -10.59 -46.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082501531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.991 kcal (2) G-P(sol) polarization free energy of solvation -35.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds