Wall clock time and date at job start Mon Mar 30 2020 04:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46905 * 111.00147 * 2 1 4 4 C 1.50696 * 109.47167 * 66.04242 * 3 2 1 5 5 H 1.07997 * 120.00540 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00015 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99966 * 179.97438 * 6 4 3 8 8 Si 1.86799 * 119.99752 * 0.02562 * 6 4 3 9 9 H 1.48498 * 109.47241 * 89.99854 * 8 6 4 10 10 H 1.48500 * 109.46983 * 209.99576 * 8 6 4 11 11 H 1.48497 * 109.47427 * 329.99800 * 8 6 4 12 12 C 1.46894 * 111.00213 * 236.04414 * 2 1 3 13 13 C 1.50704 * 109.47002 * 288.09464 * 12 2 1 14 14 C 1.37471 * 123.35121 * 104.86233 * 13 12 2 15 15 C 1.33821 * 115.09761 * 179.97438 * 14 13 12 16 16 S 1.70618 * 110.95671 * 359.97438 * 15 14 13 17 17 C 1.36654 * 123.34791 * 284.83513 * 13 12 2 18 18 C 1.46585 * 125.45705 * 0.05804 * 17 13 12 19 19 O 1.21696 * 119.99932 * 354.16810 * 18 17 13 20 20 N 1.34772 * 119.99261 * 174.17262 * 18 17 13 21 21 N 1.36605 * 119.99419 * 179.97438 * 20 18 17 22 22 H 1.08997 * 109.47079 * 189.09487 * 1 2 3 23 23 H 1.09007 * 109.46890 * 309.09556 * 1 2 3 24 24 H 1.08999 * 109.47081 * 69.09276 * 1 2 3 25 25 H 1.08997 * 109.47369 * 186.04632 * 3 2 1 26 26 H 1.09002 * 109.46613 * 306.04744 * 3 2 1 27 27 H 0.96998 * 119.99520 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.47513 * 168.08752 * 12 2 1 29 29 H 1.09006 * 109.47261 * 48.08850 * 12 2 1 30 30 H 1.07994 * 122.45051 * 359.97438 * 14 13 12 31 31 H 1.07995 * 124.52164 * 179.97438 * 15 14 13 32 32 H 0.96992 * 120.00466 * 359.97438 * 20 18 17 33 33 H 1.00900 * 110.99774 * 56.04489 * 21 20 18 34 34 H 1.00903 * 110.99727 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5114 2.0487 6 6 2.0268 3.3496 1.5284 7 7 1.7134 3.9394 2.6613 8 14 2.9988 4.2766 0.2302 9 1 2.0614 4.9802 -0.6815 10 1 3.8855 5.2684 0.8901 11 1 3.8224 3.3183 -0.5499 12 6 1.9955 -0.7660 -1.1375 13 6 1.7635 -2.2365 -0.9033 14 6 0.7903 -2.9606 -1.5501 15 6 0.7301 -4.2552 -1.2168 16 16 1.9153 -4.6411 -0.0517 17 6 2.5001 -2.9830 -0.0272 18 6 3.6012 -2.4818 0.8005 19 8 3.9947 -1.3385 0.6623 20 7 4.1777 -3.2872 1.7145 21 7 5.2042 -2.8202 2.4854 22 1 -0.3633 -1.0147 0.1624 23 1 -0.3633 0.6481 0.7976 24 1 -0.3633 0.3667 -0.9600 25 1 3.0797 1.3445 -0.1082 26 1 1.5611 1.9273 -0.8309 27 1 1.9874 4.8558 2.8229 28 1 3.0644 -0.5782 -1.2385 29 1 1.4848 -0.4585 -2.0501 30 1 0.1231 -2.5170 -2.2742 31 1 0.0255 -4.9615 -1.6302 32 1 3.8639 -4.1982 1.8248 33 1 4.9308 -1.9879 2.9860 34 1 5.5323 -3.5324 3.1205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082501531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:55 Heat of formation + Delta-G solvation = 11.233828 kcal Electronic energy + Delta-G solvation = -18629.147175 eV Core-core repulsion = 15688.998585 eV Total energy + Delta-G solvation = -2940.148590 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91448 -39.35344 -37.43562 -36.60704 -34.59331 -31.81587 -30.74745 -29.49972 -27.99499 -26.20804 -24.03234 -22.57476 -21.96558 -20.59439 -19.33661 -18.79739 -18.02914 -17.17319 -16.71239 -16.31393 -16.19334 -15.93433 -15.79325 -15.13507 -14.69332 -14.67656 -14.33688 -13.89020 -13.76084 -13.27139 -13.12238 -12.91943 -12.57303 -12.42987 -12.21384 -12.01700 -11.88580 -11.80670 -11.43891 -10.91942 -10.78335 -9.79171 -9.36526 -9.09843 -8.93833 -8.28607 -6.29687 -0.41339 0.54295 0.95024 1.30243 1.34326 1.46190 1.46897 1.88543 2.29161 2.34423 3.04780 3.42344 3.77463 4.04614 4.12432 4.22732 4.37073 4.49463 4.58231 4.66602 4.76683 4.91341 5.02726 5.04972 5.19767 5.33675 5.38804 5.57124 5.74183 5.99528 6.29353 6.45506 6.64979 6.66782 6.74197 7.32949 7.54357 8.88201 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.021105 B = 0.006197 C = 0.005256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.405574 B = 4516.970654 C = 5325.466013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.529 5.529 3 C 0.181 3.819 4 C -0.506 4.506 5 H 0.036 0.964 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.944 3.056 9 H -0.261 1.261 10 H -0.278 1.278 11 H -0.260 1.260 12 C 0.109 3.891 13 C -0.023 4.023 14 C -0.156 4.156 15 C -0.212 4.212 16 S 0.250 5.750 17 C -0.279 4.279 18 C 0.578 3.422 19 O -0.537 6.537 20 N -0.569 5.569 21 N -0.609 5.609 22 H 0.070 0.930 23 H 0.047 0.953 24 H 0.026 0.974 25 H 0.017 0.983 26 H -0.016 1.016 27 H 0.266 0.734 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.158 0.842 31 H 0.206 0.794 32 H 0.410 0.590 33 H 0.344 0.656 34 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.180 -23.008 -7.462 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.253 5.253 3 C 0.054 3.946 4 C -0.545 4.545 5 H 0.054 0.946 6 C -0.188 4.188 7 N -0.589 5.589 8 Si 0.768 3.232 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.185 1.185 12 C -0.021 4.021 13 C -0.039 4.039 14 C -0.187 4.187 15 C -0.349 4.349 16 S 0.518 5.482 17 C -0.401 4.401 18 C 0.364 3.636 19 O -0.413 6.413 20 N -0.316 5.316 21 N -0.238 5.238 22 H 0.089 0.911 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.035 0.965 26 H 0.002 0.998 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.175 0.825 31 H 0.223 0.777 32 H 0.249 0.751 33 H 0.159 0.841 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.066 -23.553 -6.948 24.580 hybrid contribution -0.972 2.100 -0.457 2.359 sum 0.093 -21.453 -7.405 22.695 Atomic orbital electron populations 1.22224 0.87543 1.01096 0.99755 1.61678 1.07665 1.14309 1.41604 1.19823 0.94613 0.85650 0.94496 1.21193 1.34367 0.97244 1.01677 0.94559 1.25770 0.96878 0.98399 0.97723 1.70038 1.48819 1.13829 1.26186 0.85762 0.79408 0.78567 0.79512 1.18622 1.20355 1.18476 1.20736 1.00316 0.89305 0.91716 1.19466 0.94291 0.95760 0.94400 1.19979 1.00527 0.93941 1.04270 1.25612 1.05198 1.00537 1.03564 1.82328 1.25446 1.03380 1.37076 1.24218 1.06234 1.00806 1.08848 1.17147 0.81622 0.84860 0.79987 1.90910 1.63527 1.19114 1.67745 1.44348 1.35446 1.15221 1.36576 1.59915 1.23745 1.10151 1.29968 0.91092 0.93450 0.95559 0.96533 0.99803 0.92462 0.91438 0.93475 0.82474 0.77698 0.75056 0.84089 0.80797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.71 9.25 127.69 1.18 2.89 16 2 N -0.53 -24.42 4.37 -931.65 -4.07 -28.49 16 3 C 0.18 9.77 3.78 85.55 0.32 10.09 16 4 C -0.51 -31.63 8.94 25.60 0.23 -31.40 16 5 H 0.04 2.50 7.41 -2.91 -0.02 2.48 16 6 C 0.01 0.57 5.47 84.66 0.46 1.04 16 7 N -0.95 -61.94 13.96 21.45 0.30 -61.64 16 8 Si 0.94 47.70 27.47 68.60 1.88 49.59 16 9 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.26 -12.91 6.54 99.48 0.65 -12.26 16 12 C 0.11 4.18 4.35 85.56 0.37 4.55 16 13 C -0.02 -0.70 4.69 -20.42 -0.10 -0.80 16 14 C -0.16 -3.45 9.75 21.08 0.21 -3.25 16 15 C -0.21 -3.34 10.92 66.82 0.73 -2.61 16 16 S 0.25 4.18 22.18 -56.49 -1.25 2.92 16 17 C -0.28 -8.17 6.45 24.08 0.16 -8.02 16 18 C 0.58 20.31 7.84 86.42 0.68 20.99 16 19 O -0.54 -24.95 14.52 -4.34 -0.06 -25.02 16 20 N -0.57 -14.67 6.46 -176.46 -1.14 -15.81 16 21 N -0.61 -15.05 10.03 37.02 0.37 -14.68 16 22 H 0.07 2.48 7.47 -2.39 -0.02 2.46 16 23 H 0.05 2.21 6.66 -2.38 -0.02 2.20 16 24 H 0.03 0.96 8.01 -2.39 -0.02 0.94 16 25 H 0.02 0.95 6.92 -2.39 -0.02 0.93 16 26 H -0.02 -0.81 7.55 -2.39 -0.02 -0.83 16 27 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 28 H 0.07 2.93 6.50 -2.39 -0.02 2.91 16 29 H 0.05 1.61 7.90 -2.38 -0.02 1.59 16 30 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 31 H 0.21 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.41 7.16 7.96 -215.50 -1.72 5.45 16 33 H 0.34 9.80 9.00 -210.55 -1.90 7.90 16 34 H 0.38 5.59 9.21 -210.55 -1.94 3.65 16 Total: -1.00 -82.70 300.19 -4.18 -86.88 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -4.45 Total: 12.77 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 4.24 Total: -6.52 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -4.54 Total: -120.63 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.06 Total: -25.02 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.88 Total: 49.59 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.25 Total: 2.92 kcal Total: -82.70 -4.18 -86.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082501531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.114 kcal (2) G-P(sol) polarization free energy of solvation -82.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds