Wall clock time and date at job start Mon Mar 30 2020 05:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48497 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46982 * 300.00085 * 3 2 1 6 6 H 1.48505 * 109.46826 * 59.99847 * 3 2 1 7 7 C 1.37872 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99662 * 185.07854 * 7 2 1 9 9 C 1.50698 * 120.00628 * 5.08177 * 7 2 1 10 10 C 1.52999 * 115.54901 * 279.40218 * 9 7 2 11 11 S 1.81001 * 109.46971 * 320.09783 * 10 9 7 12 12 C 1.76198 * 99.99805 * 180.02562 * 11 10 9 13 13 N 1.31538 * 126.45510 * 0.03243 * 12 11 10 14 14 N 1.28418 * 110.50121 * 179.97438 * 13 12 11 15 15 N 1.28905 * 110.34064 * 359.97438 * 14 13 12 16 16 N 1.35402 * 126.44854 * 179.71045 * 12 11 10 17 17 C 1.46500 * 127.38637 * 359.97438 * 16 12 11 18 18 C 1.53005 * 109.46932 * 89.99499 * 17 16 12 19 19 N 1.46904 * 109.46618 * 180.02562 * 18 17 16 20 20 C 1.53005 * 117.49647 * 65.06684 * 9 7 2 21 21 C 1.52997 * 60.03184 * 107.50161 * 20 9 7 22 22 H 0.97002 * 119.99824 * 354.99701 * 1 2 3 23 23 H 1.08992 * 109.47254 * 80.10257 * 10 9 7 24 24 H 1.08999 * 109.46741 * 200.10386 * 10 9 7 25 25 H 1.08997 * 109.46940 * 209.99191 * 17 16 12 26 26 H 1.08998 * 109.47295 * 329.99741 * 17 16 12 27 27 H 1.08997 * 109.47056 * 299.99621 * 18 17 16 28 28 H 1.08991 * 109.47251 * 60.00264 * 18 17 16 29 29 H 1.00904 * 110.99873 * 180.02562 * 19 18 17 30 30 H 1.00901 * 110.99693 * 303.94777 * 19 18 17 31 31 H 1.09004 * 117.49539 * 215.00504 * 20 9 7 32 32 H 1.08997 * 117.49859 * 359.97438 * 20 9 7 33 33 H 1.09004 * 117.49279 * 107.49553 * 21 20 9 34 34 H 1.08993 * 117.50505 * 252.51728 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0833 9 6 1.2555 -2.4967 -0.1145 10 6 0.6281 -3.0138 1.1816 11 16 1.7651 -2.7238 2.5598 12 6 0.8176 -3.3958 3.8847 13 7 -0.3776 -3.9377 3.7945 14 7 -0.7828 -4.3277 4.9489 15 7 0.1059 -4.0700 5.8464 16 7 1.1853 -3.4571 5.1864 17 6 2.4386 -2.9849 5.7798 18 6 2.2790 -1.5269 6.2156 19 7 3.5361 -1.0532 6.8101 20 6 0.5042 -2.7667 -1.4198 21 6 1.7896 -3.5344 -1.1049 22 1 -0.4850 0.8369 0.0733 23 1 -0.3087 -2.4884 1.3667 24 1 0.4335 -4.0823 1.0899 25 1 2.6839 -3.5984 6.6467 26 1 3.2395 -3.0586 5.0441 27 1 2.0337 -0.9134 5.3487 28 1 1.4783 -1.4531 6.9513 29 1 3.4563 -0.0920 7.1067 30 1 3.8193 -1.6453 7.5765 31 1 -0.4369 -3.3128 -1.3550 32 1 0.5514 -2.0020 -2.1951 33 1 1.6941 -4.5857 -0.8329 34 1 2.6829 -3.2749 -1.6728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084377830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:38 Heat of formation + Delta-G solvation = 135.104662 kcal Electronic energy + Delta-G solvation = -18212.338959 eV Core-core repulsion = 15309.854563 eV Total energy + Delta-G solvation = -2902.484396 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.44951 -36.75367 -36.47761 -33.57711 -32.13568 -31.79774 -28.51079 -27.84491 -25.54663 -23.98002 -22.80912 -22.01903 -21.23653 -19.41747 -17.80342 -16.75403 -16.39907 -16.04758 -15.71720 -14.83714 -14.74349 -14.22711 -14.09799 -13.76112 -13.33807 -12.99389 -12.65587 -12.31549 -12.10886 -11.69638 -11.53879 -11.08811 -11.04466 -10.71937 -10.64082 -10.59399 -10.32477 -10.16250 -10.12039 -9.71804 -9.06784 -8.98845 -8.64414 -8.20766 -7.25047 -6.20193 -4.28796 1.21738 1.39390 2.35903 2.62075 2.88063 3.20322 3.29716 3.32804 4.27372 4.27922 4.38012 4.62739 4.98504 5.05214 5.09968 5.16601 5.28458 5.58661 5.70871 5.80180 5.87021 6.05367 6.29572 6.32795 6.39264 6.63062 6.71115 6.72871 6.96447 7.07255 7.17853 7.34872 7.71343 8.18211 8.73100 8.78658 9.38266 10.87157 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.006997 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.734138 B = 4001.019221 C = 5051.245128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.500 4.500 8 H 0.067 0.933 9 C 0.047 3.953 10 C -0.053 4.053 11 S 0.078 5.922 12 C 0.212 3.788 13 N -0.344 5.344 14 N -0.039 5.039 15 N -0.109 5.109 16 N -0.377 5.377 17 C 0.128 3.872 18 C 0.044 3.956 19 N -0.841 5.841 20 C -0.148 4.148 21 C -0.206 4.206 22 H 0.264 0.736 23 H 0.100 0.900 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.038 0.962 29 H 0.352 0.648 30 H 0.341 0.659 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 -2.822 9.120 11.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.540 4.540 8 H 0.085 0.915 9 C 0.044 3.956 10 C -0.202 4.202 11 S 0.308 5.692 12 C -0.170 4.170 13 N -0.202 5.202 14 N -0.035 5.035 15 N -0.097 5.097 16 N -0.177 5.177 17 C 0.005 3.995 18 C -0.088 4.088 19 N -0.372 5.372 20 C -0.188 4.188 21 C -0.243 4.243 22 H 0.074 0.926 23 H 0.118 0.882 24 H 0.087 0.913 25 H 0.119 0.881 26 H 0.133 0.867 27 H 0.108 0.892 28 H 0.056 0.944 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.018 -3.003 8.969 11.210 hybrid contribution -0.700 0.960 0.801 1.433 sum 5.318 -2.042 9.769 11.309 Atomic orbital electron populations 1.69974 1.05997 1.27189 1.46921 1.24976 0.94764 0.99050 0.93708 0.86576 0.80471 0.83564 0.77806 1.19356 1.20842 1.20771 1.20429 0.93013 0.88281 1.52260 0.91497 1.18530 0.98331 0.94016 0.84682 1.23411 1.00107 1.02087 0.94618 1.86429 1.20736 1.68206 0.93824 1.29169 0.97035 0.98672 0.92089 1.74986 1.09124 1.19476 1.16615 1.77752 1.19212 1.12042 0.94521 1.82293 0.92574 1.16522 1.18288 1.51371 1.16381 1.44842 1.05090 1.21849 0.81216 0.95540 1.00893 1.22100 0.91356 0.94741 1.00586 1.58541 1.31989 1.07874 1.38811 1.22619 0.93070 1.01531 1.01581 1.23104 0.98320 0.95646 1.07209 0.92648 0.88179 0.91336 0.88058 0.86689 0.89155 0.94399 0.83421 0.84688 0.91437 0.89681 0.91257 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.75 13.08 55.43 0.73 -22.03 16 2 C 0.08 2.04 5.42 -17.82 -0.10 1.94 16 3 Si 0.89 19.71 29.54 -169.99 -5.02 14.68 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.50 -12.21 7.52 -34.44 -0.26 -12.47 16 8 H 0.07 1.65 7.82 -52.49 -0.41 1.24 16 9 C 0.05 1.05 1.58 -155.62 -0.25 0.80 16 10 C -0.05 -1.12 5.35 37.16 0.20 -0.93 16 11 S 0.08 1.47 20.64 -107.50 -2.22 -0.75 16 12 C 0.21 3.97 8.15 -89.18 -0.73 3.25 16 13 N -0.34 -7.14 11.57 30.50 0.35 -6.78 16 14 N -0.04 -0.79 13.38 60.35 0.81 0.02 16 15 N -0.11 -1.97 13.93 60.35 0.84 -1.13 16 16 N -0.38 -6.12 3.69 -61.30 -0.23 -6.35 16 17 C 0.13 1.51 6.63 -4.04 -0.03 1.48 16 18 C 0.04 0.50 7.11 -3.82 -0.03 0.47 16 19 N -0.84 -7.32 9.62 -10.37 -0.10 -7.42 16 20 C -0.15 -3.20 9.68 -26.73 -0.26 -3.46 16 21 C -0.21 -4.09 9.89 -26.69 -0.26 -4.35 16 22 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 23 H 0.10 2.37 8.14 -51.92 -0.42 1.94 16 24 H 0.07 1.36 7.95 -51.92 -0.41 0.95 16 25 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.12 1.30 7.85 -51.93 -0.41 0.90 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.35 2.61 9.08 -39.29 -0.36 2.25 16 30 H 0.34 2.22 8.99 -39.29 -0.35 1.87 16 31 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 33 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 34 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 313.19 15.07 4.72 4.72 Total: -1.00 -27.99 313.19 -6.28 -34.27 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.45 Total: 4.04 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.71 Total: -13.26 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 2.40 Total: -43.70 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.22 Total: -0.75 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.99 -6.28 -34.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084377830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.373 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds