Wall clock time and date at job start Mon Mar 30 2020 05:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48497 * 109.47082 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46982 * 300.00085 * 3 2 1 6 6 H 1.48505 * 109.46826 * 59.99847 * 3 2 1 7 7 C 1.37872 * 119.99646 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99662 * 185.07854 * 7 2 1 9 9 C 1.50698 * 120.00628 * 5.08177 * 7 2 1 10 10 C 1.52999 * 115.54901 * 279.40218 * 9 7 2 11 11 S 1.81001 * 109.46971 * 320.09783 * 10 9 7 12 12 C 1.76198 * 99.99805 * 180.02562 * 11 10 9 13 13 N 1.31538 * 126.45510 * 0.03243 * 12 11 10 14 14 N 1.28418 * 110.50121 * 179.97438 * 13 12 11 15 15 N 1.28905 * 110.34064 * 359.97438 * 14 13 12 16 16 N 1.35402 * 126.44854 * 179.71045 * 12 11 10 17 17 C 1.46500 * 127.38637 * 359.97438 * 16 12 11 18 18 C 1.53005 * 109.46932 * 89.99499 * 17 16 12 19 19 N 1.46904 * 109.46618 * 180.02562 * 18 17 16 20 20 C 1.53005 * 117.49647 * 65.06684 * 9 7 2 21 21 C 1.52997 * 60.03184 * 107.50161 * 20 9 7 22 22 H 0.97002 * 119.99824 * 354.99701 * 1 2 3 23 23 H 1.08992 * 109.47254 * 80.10257 * 10 9 7 24 24 H 1.08999 * 109.46741 * 200.10386 * 10 9 7 25 25 H 1.08997 * 109.46940 * 209.99191 * 17 16 12 26 26 H 1.08998 * 109.47295 * 329.99741 * 17 16 12 27 27 H 1.08997 * 109.47056 * 299.99621 * 18 17 16 28 28 H 1.08991 * 109.47251 * 60.00264 * 18 17 16 29 29 H 1.00904 * 110.99873 * 180.02562 * 19 18 17 30 30 H 1.00901 * 110.99693 * 303.94777 * 19 18 17 31 31 H 1.09004 * 117.49539 * 215.00504 * 20 9 7 32 32 H 1.08997 * 117.49859 * 359.97438 * 20 9 7 33 33 H 1.09004 * 117.49279 * 107.49553 * 21 20 9 34 34 H 1.08993 * 117.50505 * 252.51728 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0833 9 6 1.2555 -2.4967 -0.1145 10 6 0.6281 -3.0138 1.1816 11 16 1.7651 -2.7238 2.5598 12 6 0.8176 -3.3958 3.8847 13 7 -0.3776 -3.9377 3.7945 14 7 -0.7828 -4.3277 4.9489 15 7 0.1059 -4.0700 5.8464 16 7 1.1853 -3.4571 5.1864 17 6 2.4386 -2.9849 5.7798 18 6 2.2790 -1.5269 6.2156 19 7 3.5361 -1.0532 6.8101 20 6 0.5042 -2.7667 -1.4198 21 6 1.7896 -3.5344 -1.1049 22 1 -0.4850 0.8369 0.0733 23 1 -0.3087 -2.4884 1.3667 24 1 0.4335 -4.0823 1.0899 25 1 2.6839 -3.5984 6.6467 26 1 3.2395 -3.0586 5.0441 27 1 2.0337 -0.9134 5.3487 28 1 1.4783 -1.4531 6.9513 29 1 3.4563 -0.0920 7.1067 30 1 3.8193 -1.6453 7.5765 31 1 -0.4369 -3.3128 -1.3550 32 1 0.5514 -2.0020 -2.1951 33 1 1.6941 -4.5857 -0.8329 34 1 2.6829 -3.2749 -1.6728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084377830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:37 Heat of formation + Delta-G solvation = 116.593622 kcal Electronic energy + Delta-G solvation = -18213.141658 eV Core-core repulsion = 15309.854563 eV Total energy + Delta-G solvation = -2903.287095 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.91383 -38.44754 -37.54510 -34.67105 -34.02082 -33.29393 -29.68089 -29.41806 -27.42223 -25.23691 -24.27108 -23.13913 -22.90056 -21.15454 -19.18949 -18.15314 -17.78432 -17.66248 -16.74125 -16.59554 -15.91251 -15.65211 -15.37269 -15.13740 -14.91968 -14.44222 -14.05211 -13.78615 -13.48196 -13.35533 -12.92179 -12.83810 -12.59706 -12.33474 -12.20454 -12.09091 -11.93864 -11.74989 -11.52829 -11.43619 -10.77884 -10.48054 -9.92924 -9.80372 -8.76611 -8.10172 -6.22888 -0.22113 -0.07924 1.07911 1.09852 1.28566 1.43916 1.49091 1.57475 2.44763 3.17881 3.20715 3.45750 3.48159 3.67812 3.82920 4.07530 4.13770 4.18692 4.23921 4.36845 4.62562 4.67016 4.69753 4.73658 4.98672 5.04274 5.05996 5.25421 5.48132 5.65276 5.78408 6.00879 6.34127 6.50603 6.83256 7.30145 7.46981 8.96872 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.006997 C = 0.005542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.734138 B = 4001.019221 C = 5051.245128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.041 3.959 3 Si 0.938 3.062 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.282 1.282 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.049 4.049 11 S 0.103 5.897 12 C 0.204 3.796 13 N -0.369 5.369 14 N -0.060 5.060 15 N -0.100 5.100 16 N -0.360 5.360 17 C 0.118 3.882 18 C 0.053 3.947 19 N -0.840 5.840 20 C -0.156 4.156 21 C -0.179 4.179 22 H 0.260 0.740 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.133 0.867 26 H 0.124 0.876 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.361 0.639 30 H 0.356 0.644 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.731 -3.233 10.251 13.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.185 1.185 5 H -0.212 1.212 6 H -0.208 1.208 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.019 3.981 10 C -0.198 4.198 11 S 0.333 5.667 12 C -0.179 4.179 13 N -0.227 5.227 14 N -0.056 5.056 15 N -0.088 5.088 16 N -0.161 5.161 17 C -0.004 4.004 18 C -0.080 4.080 19 N -0.373 5.373 20 C -0.196 4.196 21 C -0.216 4.216 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.097 0.903 25 H 0.151 0.849 26 H 0.142 0.858 27 H 0.084 0.916 28 H 0.055 0.945 29 H 0.176 0.824 30 H 0.170 0.830 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.828 -3.404 10.108 13.231 hybrid contribution -1.183 1.055 0.556 1.680 sum 6.645 -2.349 10.664 12.783 Atomic orbital electron populations 1.70078 1.07135 1.27430 1.48707 1.25552 0.95259 1.01567 0.93791 0.85800 0.79834 0.80579 0.77358 1.18521 1.21239 1.20846 1.20610 0.92906 0.89269 1.51469 0.91853 1.18626 0.99422 0.94549 0.85537 1.23190 0.99299 1.02092 0.95241 1.86153 1.19226 1.68649 0.92717 1.28974 0.96818 0.99163 0.92962 1.74912 1.10184 1.20235 1.17376 1.77744 1.20059 1.13215 0.94573 1.82199 0.92675 1.15859 1.18098 1.51628 1.16870 1.43372 1.04196 1.22325 0.79338 0.96478 1.02212 1.21896 0.92511 0.93760 0.99795 1.58494 1.30320 1.08796 1.39732 1.22541 0.94424 1.01836 1.00808 1.23130 0.97285 0.96283 1.04862 0.93037 0.91345 0.90313 0.84872 0.85797 0.91606 0.94531 0.82422 0.82963 0.90804 0.91577 0.88810 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.92 13.08 21.45 0.28 -47.64 16 2 C 0.04 2.06 5.42 84.65 0.46 2.52 16 3 Si 0.94 40.27 29.54 68.60 2.03 42.30 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.50 -24.37 7.52 25.60 0.19 -24.18 16 8 H 0.06 3.06 7.82 -2.91 -0.02 3.03 16 9 C 0.02 0.93 1.58 -52.90 -0.08 0.84 16 10 C -0.05 -2.05 5.35 71.98 0.38 -1.67 16 11 S 0.10 3.80 20.64 -56.49 -1.17 2.64 16 12 C 0.20 7.43 8.15 179.84 1.47 8.90 16 13 N -0.37 -15.17 11.57 -57.41 -0.66 -15.84 16 14 N -0.06 -2.38 13.38 37.02 0.50 -1.89 16 15 N -0.10 -3.48 13.93 37.02 0.52 -2.97 16 16 N -0.36 -11.08 3.69 -347.86 -1.28 -12.37 16 17 C 0.12 2.46 6.63 86.38 0.57 3.04 16 18 C 0.05 1.08 7.11 86.30 0.61 1.69 16 19 N -0.84 -12.42 9.62 -186.71 -1.80 -14.22 16 20 C -0.16 -6.72 9.68 30.59 0.30 -6.42 16 21 C -0.18 -6.78 9.89 30.62 0.30 -6.48 16 22 H 0.26 13.49 8.32 -92.71 -0.77 12.72 16 23 H 0.07 3.30 8.14 -2.40 -0.02 3.28 16 24 H 0.08 3.08 7.95 -2.40 -0.02 3.06 16 25 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.12 2.46 7.85 -2.39 -0.02 2.44 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.36 4.50 9.08 -89.69 -0.81 3.68 16 30 H 0.36 3.50 8.99 -89.69 -0.81 2.69 16 31 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.07 3.05 8.14 -2.39 -0.02 3.04 16 33 H 0.09 3.10 8.09 -2.38 -0.02 3.08 16 34 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -59.35 313.19 2.12 -57.22 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.49 Total: 14.51 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 4.20 Total: -21.76 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -2.45 Total: -94.91 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.17 Total: 2.64 kcal Total: -59.35 2.12 -57.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084377830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.816 kcal (2) G-P(sol) polarization free energy of solvation -59.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds