Wall clock time and date at job start Mon Mar 30 2020 04:52:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46499 * 109.47352 * 2 1
4 4 C 1.46496 * 120.00024 * 265.11475 * 3 2 1
5 5 C 1.50702 * 109.47345 * 263.17486 * 4 3 2
6 6 H 1.08001 * 119.99899 * 0.02562 * 5 4 3
7 7 C 1.37876 * 119.99979 * 179.97438 * 5 4 3
8 8 N 1.31514 * 119.99846 * 0.02562 * 7 5 4
9 9 Si 1.86794 * 119.99983 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47186 * 60.00122 * 9 7 5
11 11 H 1.48498 * 109.47356 * 180.02562 * 9 7 5
12 12 H 1.48503 * 109.47022 * 300.00294 * 9 7 5
13 13 C 1.34776 * 120.00007 * 85.11810 * 3 2 1
14 14 O 1.21639 * 119.99874 * 3.43421 * 13 3 2
15 15 C 1.47269 * 120.00433 * 183.43181 * 13 3 2
16 16 C 1.35207 * 123.14023 * 173.48126 * 15 13 3
17 17 S 1.70945 * 108.82189 * 179.73903 * 16 15 13
18 18 C 1.70773 * 91.13118 * 0.33885 * 17 16 15
19 19 C 1.50695 * 124.72416 * 179.91605 * 18 17 16
20 20 N 1.46903 * 109.47141 * 269.70247 * 19 18 17
21 21 N 1.28654 * 110.55730 * 359.65760 * 18 17 16
22 22 H 1.08999 * 109.47087 * 179.97438 * 1 2 3
23 23 H 1.09005 * 109.46976 * 299.99978 * 1 2 3
24 24 H 1.08998 * 109.46762 * 59.99728 * 1 2 3
25 25 H 1.09005 * 109.46976 * 240.00022 * 2 1 3
26 26 H 1.09004 * 109.47436 * 120.00324 * 2 1 3
27 27 H 1.09002 * 109.47020 * 23.18107 * 4 3 2
28 28 H 1.09004 * 109.46647 * 143.17639 * 4 3 2
29 29 H 0.97002 * 119.99470 * 180.02562 * 8 7 5
30 30 H 1.07993 * 125.58961 * 0.02562 * 16 15 13
31 31 H 1.08993 * 109.47329 * 149.70126 * 19 18 17
32 32 H 1.09008 * 109.46693 * 29.69667 * 19 18 17
33 33 H 1.00903 * 111.00051 * 179.97438 * 20 19 18
34 34 H 1.00894 * 110.99876 * 303.95157 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3644 2.0357 -1.2641
5 6 3.8503 1.9319 -1.4933
6 1 4.4744 1.4283 -0.7699
7 6 4.4128 2.4789 -2.6271
8 7 3.6527 3.0917 -3.5081
9 14 6.2544 2.3496 -2.9116
10 1 6.6468 0.9186 -2.9711
11 1 6.6052 3.0132 -4.1929
12 1 6.9754 3.0146 -1.7966
13 6 2.1494 2.0496 1.1630
14 8 1.9220 1.4866 2.2170
15 6 2.5679 3.4616 1.1577
16 6 2.5965 4.2282 2.2711
17 16 3.1419 5.7926 1.8497
18 6 3.2905 5.3361 0.2108
19 6 3.7566 6.2474 -0.8952
20 7 2.5988 6.9307 -1.4873
21 7 2.9543 4.1044 0.0526
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 1.8933 -0.5139 -0.8900
26 1 1.8934 -0.5139 0.8900
27 1 1.8354 1.5477 -2.0827
28 1 2.0761 3.0860 -1.2201
29 1 4.0485 3.4763 -4.3059
30 1 2.3244 3.9039 3.2646
31 1 4.2625 5.6598 -1.6612
32 1 4.4468 6.9873 -0.4897
33 1 2.8853 7.5485 -2.2318
34 1 1.9137 6.2653 -1.8127
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000085545098.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:39
Heat of formation + Delta-G solvation = 21.336668 kcal
Electronic energy + Delta-G solvation = -19101.419990 eV
Core-core repulsion = 16161.709493 eV
Total energy + Delta-G solvation = -2939.710498 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 269.094 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.96291 -38.04339 -35.20471 -34.38669 -32.63614 -30.56948 -29.73083 -26.87299
-26.15854 -24.58280 -22.89309 -21.98039 -19.93537 -18.82437 -17.53589 -16.43125
-15.95889 -15.68921 -15.13084 -14.73889 -14.55521 -14.30273 -14.17833 -13.40770
-13.06265 -12.78200 -12.43109 -12.24667 -11.97525 -11.88778 -11.64379 -11.55420
-11.23371 -10.91773 -10.77491 -10.46508 -10.06974 -9.68439 -9.32179 -9.14243
-8.75667 -8.53345 -8.37506 -8.23058 -7.60878 -6.02434 -4.01651 1.02816
1.75158 2.13654 2.70073 3.26950 3.30802 3.35923 3.97079 4.09373
4.41705 4.53378 5.06254 5.30643 5.32969 5.49910 5.63012 5.71253
5.78968 5.83408 5.91145 6.08038 6.25500 6.32199 6.48322 6.64356
6.88940 7.24716 7.51057 7.63434 7.77844 7.89442 8.17199 8.28972
8.37280 8.92734 9.04237 9.58673 11.05258
Molecular weight = 269.09amu
Principal moments of inertia in cm(-1)
A = 0.011680 B = 0.011528 C = 0.006954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2396.775479 B = 2428.183930 C = 4025.319149
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.114 3.886
3 N -0.578 5.578
4 C 0.228 3.772
5 C -0.498 4.498
6 H 0.049 0.951
7 C 0.070 3.930
8 N -0.892 5.892
9 Si 0.882 3.118
10 H -0.279 1.279
11 H -0.288 1.288
12 H -0.279 1.279
13 C 0.588 3.412
14 O -0.573 6.573
15 C 0.027 3.973
16 C -0.240 4.240
17 S 0.166 5.834
18 C 0.024 3.976
19 C 0.141 3.859
20 N -0.843 5.843
21 N -0.364 5.364
22 H 0.058 0.942
23 H 0.053 0.947
24 H 0.055 0.945
25 H 0.079 0.921
26 H 0.069 0.931
27 H 0.025 0.975
28 H 0.079 0.921
29 H 0.258 0.742
30 H 0.180 0.820
31 H 0.072 0.928
32 H 0.082 0.918
33 H 0.344 0.656
34 H 0.352 0.648
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.309 5.733 5.044 7.978
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.010 4.010
3 N -0.306 5.306
4 C 0.109 3.891
5 C -0.537 4.537
6 H 0.067 0.933
7 C -0.131 4.131
8 N -0.532 5.532
9 Si 0.710 3.290
10 H -0.204 1.204
11 H -0.213 1.213
12 H -0.205 1.205
13 C 0.373 3.627
14 O -0.455 6.455
15 C -0.109 4.109
16 C -0.382 4.382
17 S 0.423 5.577
18 C -0.256 4.256
19 C 0.008 3.992
20 N -0.374 5.374
21 N -0.078 5.078
22 H 0.077 0.923
23 H 0.073 0.927
24 H 0.074 0.926
25 H 0.097 0.903
26 H 0.088 0.912
27 H 0.043 0.957
28 H 0.096 0.904
29 H 0.068 0.932
30 H 0.197 0.803
31 H 0.090 0.910
32 H 0.101 0.899
33 H 0.157 0.843
34 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -2.301 6.510 6.081 9.200
hybrid contribution 1.216 -1.580 -1.218 2.336
sum -1.086 4.930 4.862 7.009
Atomic orbital electron populations
1.22112 0.96722 1.01294 1.02008 1.21304 0.93497 0.83634 1.02516
1.48216 1.60943 1.12860 1.08622 1.20000 0.95749 0.95409 0.77940
1.21234 0.92538 1.34771 1.05197 0.93272 1.24713 0.97088 0.95367
0.95955 1.69926 1.34677 1.37803 1.10803 0.86824 0.86567 0.78373
0.77197 1.20435 1.21338 1.20508 1.17124 0.77528 0.84165 0.83875
1.90692 1.54485 1.68818 1.31515 1.20535 1.05348 0.97086 0.87923
1.26468 1.08844 0.98256 1.04642 1.82497 1.58661 1.10283 1.06306
1.27237 1.05625 0.95082 0.97677 1.20154 0.92554 0.93457 0.93076
1.58834 1.14189 1.24989 1.39419 1.67720 1.08896 1.04257 1.26907
0.92310 0.92750 0.92583 0.90262 0.91233 0.95711 0.90373 0.93214
0.80299 0.90985 0.89949 0.84323 0.83468
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.67 10.21 37.16 0.38 -2.29 16
2 C 0.11 2.18 6.08 -4.04 -0.02 2.16 16
3 N -0.58 -12.98 2.49 -176.38 -0.44 -13.42 16
4 C 0.23 5.62 4.74 -5.19 -0.02 5.60 16
5 C -0.50 -13.22 8.16 -34.44 -0.28 -13.50 16
6 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16
7 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16
8 N -0.89 -23.84 13.29 55.43 0.74 -23.10 16
9 Si 0.88 20.82 29.54 -169.99 -5.02 15.80 16
10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16
11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16
12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
13 C 0.59 13.41 7.55 -12.59 -0.10 13.31 16
14 O -0.57 -13.56 16.36 5.24 0.09 -13.47 16
15 C 0.03 0.57 6.48 -84.53 -0.55 0.02 16
16 C -0.24 -4.21 10.62 29.65 0.31 -3.90 16
17 S 0.17 2.45 22.92 -107.50 -2.46 -0.01 16
18 C 0.02 0.44 6.85 -13.61 -0.09 0.34 16
19 C 0.14 2.23 7.36 -4.98 -0.04 2.20 16
20 N -0.84 -11.89 9.61 -11.41 -0.11 -12.00 16
21 N -0.36 -7.75 5.87 -8.51 -0.05 -7.80 16
22 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
23 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16
24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
25 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16
26 H 0.07 1.33 7.53 -51.93 -0.39 0.94 16
27 H 0.02 0.64 8.02 -51.93 -0.42 0.23 16
28 H 0.08 2.00 5.28 -51.93 -0.27 1.73 16
29 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16
30 H 0.18 2.84 8.04 -52.49 -0.42 2.42 16
31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16
32 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16
33 H 0.34 4.01 9.08 -39.29 -0.36 3.66 16
34 H 0.35 5.53 8.98 -39.29 -0.35 5.18 16
LS Contribution 306.69 15.07 4.62 4.62
Total: -1.00 -29.58 306.69 -7.43 -37.01
By element:
Atomic # 1 Polarization: 10.98 SS G_CDS: -4.29 Total: 6.69 kcal
Atomic # 6 Polarization: 6.18 SS G_CDS: -0.51 Total: 5.68 kcal
Atomic # 7 Polarization: -56.46 SS G_CDS: 0.14 Total: -56.32 kcal
Atomic # 8 Polarization: -13.56 SS G_CDS: 0.09 Total: -13.47 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal
Atomic # 16 Polarization: 2.45 SS G_CDS: -2.46 Total: -0.01 kcal
Total LS contribution 4.62 Total: 4.62 kcal
Total: -29.58 -7.43 -37.01 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085545098.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.347 kcal
(2) G-P(sol) polarization free energy of solvation -29.577 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.770 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.010 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.337 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds