Wall clock time and date at job start Mon Mar 30 2020 04:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47352 * 2 1 4 4 C 1.46496 * 120.00024 * 265.11475 * 3 2 1 5 5 C 1.50702 * 109.47345 * 263.17486 * 4 3 2 6 6 H 1.08001 * 119.99899 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99979 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99846 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99983 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47186 * 60.00122 * 9 7 5 11 11 H 1.48498 * 109.47356 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47022 * 300.00294 * 9 7 5 13 13 C 1.34776 * 120.00007 * 85.11810 * 3 2 1 14 14 O 1.21639 * 119.99874 * 3.43421 * 13 3 2 15 15 C 1.47269 * 120.00433 * 183.43181 * 13 3 2 16 16 C 1.35207 * 123.14023 * 173.48126 * 15 13 3 17 17 S 1.70945 * 108.82189 * 179.73903 * 16 15 13 18 18 C 1.70773 * 91.13118 * 0.33885 * 17 16 15 19 19 C 1.50695 * 124.72416 * 179.91605 * 18 17 16 20 20 N 1.46903 * 109.47141 * 269.70247 * 19 18 17 21 21 N 1.28654 * 110.55730 * 359.65760 * 18 17 16 22 22 H 1.08999 * 109.47087 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46976 * 299.99978 * 1 2 3 24 24 H 1.08998 * 109.46762 * 59.99728 * 1 2 3 25 25 H 1.09005 * 109.46976 * 240.00022 * 2 1 3 26 26 H 1.09004 * 109.47436 * 120.00324 * 2 1 3 27 27 H 1.09002 * 109.47020 * 23.18107 * 4 3 2 28 28 H 1.09004 * 109.46647 * 143.17639 * 4 3 2 29 29 H 0.97002 * 119.99470 * 180.02562 * 8 7 5 30 30 H 1.07993 * 125.58961 * 0.02562 * 16 15 13 31 31 H 1.08993 * 109.47329 * 149.70126 * 19 18 17 32 32 H 1.09008 * 109.46693 * 29.69667 * 19 18 17 33 33 H 1.00903 * 111.00051 * 179.97438 * 20 19 18 34 34 H 1.00894 * 110.99876 * 303.95157 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3644 2.0357 -1.2641 5 6 3.8503 1.9319 -1.4933 6 1 4.4744 1.4283 -0.7699 7 6 4.4128 2.4789 -2.6271 8 7 3.6527 3.0917 -3.5081 9 14 6.2544 2.3496 -2.9116 10 1 6.6468 0.9186 -2.9711 11 1 6.6052 3.0132 -4.1929 12 1 6.9754 3.0146 -1.7966 13 6 2.1494 2.0496 1.1630 14 8 1.9220 1.4866 2.2170 15 6 2.5679 3.4616 1.1577 16 6 2.5965 4.2282 2.2711 17 16 3.1419 5.7926 1.8497 18 6 3.2905 5.3361 0.2108 19 6 3.7566 6.2474 -0.8952 20 7 2.5988 6.9307 -1.4873 21 7 2.9543 4.1044 0.0526 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8354 1.5477 -2.0827 28 1 2.0761 3.0860 -1.2201 29 1 4.0485 3.4763 -4.3059 30 1 2.3244 3.9039 3.2646 31 1 4.2625 5.6598 -1.6612 32 1 4.4468 6.9873 -0.4897 33 1 2.8853 7.5485 -2.2318 34 1 1.9137 6.2653 -1.8127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085545098.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:39 Heat of formation + Delta-G solvation = 0.729571 kcal Electronic energy + Delta-G solvation = -19102.313581 eV Core-core repulsion = 16161.709493 eV Total energy + Delta-G solvation = -2940.604089 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.52143 -39.62685 -36.95609 -35.62129 -34.59547 -32.14585 -31.14028 -28.79875 -27.50079 -26.04392 -24.82784 -23.42768 -21.39335 -20.30564 -19.15662 -18.38655 -17.49103 -17.19777 -16.66219 -16.32497 -16.22344 -15.80078 -15.63176 -14.88422 -14.49817 -14.41704 -14.13255 -13.78760 -13.54451 -13.30112 -13.17036 -13.08116 -12.82017 -12.70863 -12.55307 -12.14073 -11.82087 -11.66674 -11.04986 -10.61476 -10.43280 -10.02922 -9.77876 -9.65927 -9.35639 -8.04668 -6.10070 -0.36892 0.45090 0.76218 1.15275 1.37631 1.39565 1.46009 2.32036 2.46201 2.51883 3.15228 3.27028 3.80967 3.88792 4.10098 4.23626 4.35710 4.39660 4.47848 4.51794 4.74789 4.80791 4.89870 4.99088 5.11426 5.24283 5.53143 5.86897 5.93963 6.04435 6.27626 6.52297 6.54086 6.76167 6.96964 7.28426 7.53280 9.01738 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.011680 B = 0.011528 C = 0.006954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.775479 B = 2428.183930 C = 4025.319149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.106 3.894 3 N -0.586 5.586 4 C 0.247 3.753 5 C -0.506 4.506 6 H 0.027 0.973 7 C 0.039 3.961 8 N -0.907 5.907 9 Si 0.932 3.068 10 H -0.281 1.281 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.579 3.421 14 O -0.592 6.592 15 C -0.015 4.015 16 C -0.241 4.241 17 S 0.284 5.716 18 C -0.005 4.005 19 C 0.145 3.855 20 N -0.834 5.834 21 N -0.404 5.404 22 H 0.091 0.909 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.005 0.995 28 H 0.073 0.927 29 H 0.261 0.739 30 H 0.194 0.806 31 H 0.038 0.962 32 H 0.114 0.886 33 H 0.358 0.642 34 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 7.206 5.805 9.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 N -0.314 5.314 4 C 0.127 3.873 5 C -0.545 4.545 6 H 0.046 0.954 7 C -0.161 4.161 8 N -0.547 5.547 9 Si 0.759 3.241 10 H -0.207 1.207 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.366 3.634 14 O -0.476 6.476 15 C -0.151 4.151 16 C -0.384 4.384 17 S 0.542 5.458 18 C -0.284 4.284 19 C 0.011 3.989 20 N -0.365 5.365 21 N -0.119 5.119 22 H 0.110 0.890 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.023 0.977 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.212 0.788 31 H 0.057 0.943 32 H 0.132 0.868 33 H 0.173 0.827 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.881 8.002 6.828 10.686 hybrid contribution 1.090 -1.938 -1.363 2.608 sum -0.791 6.064 5.464 8.201 Atomic orbital electron populations 1.22003 0.94359 1.03245 1.01225 1.21508 0.95470 0.82276 1.02403 1.48268 1.61175 1.13930 1.08015 1.19629 0.94478 0.95032 0.78196 1.21201 0.93242 1.35044 1.05010 0.95442 1.25195 1.00170 0.95006 0.95688 1.69993 1.35849 1.37928 1.10958 0.86037 0.82735 0.78034 0.77257 1.20697 1.20315 1.20629 1.17493 0.77136 0.85192 0.83545 1.90650 1.55579 1.69590 1.31736 1.20429 1.08470 0.96853 0.89345 1.26863 1.07134 0.99894 1.04508 1.82000 1.55331 1.06514 1.01982 1.27595 1.05483 0.94798 1.00554 1.20190 0.93139 0.93471 0.92085 1.58857 1.13304 1.24368 1.39998 1.67611 1.10259 1.05996 1.28037 0.88978 0.93791 0.92942 0.90168 0.91449 0.97707 0.91012 0.93020 0.78837 0.94346 0.86783 0.82737 0.84601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 10.21 71.98 0.73 -4.13 16 2 C 0.11 4.13 6.08 86.38 0.52 4.66 16 3 N -0.59 -27.06 2.49 -830.19 -2.06 -29.12 16 4 C 0.25 12.55 4.74 85.63 0.41 12.96 16 5 C -0.51 -27.50 8.16 25.60 0.21 -27.29 16 6 H 0.03 1.58 7.81 -2.91 -0.02 1.56 16 7 C 0.04 2.08 5.46 84.65 0.46 2.55 16 8 N -0.91 -48.89 13.29 21.45 0.28 -48.60 16 9 Si 0.93 42.82 29.54 68.60 2.03 44.85 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 C 0.58 26.97 7.55 86.62 0.65 27.62 16 14 O -0.59 -28.36 16.36 -4.16 -0.07 -28.42 16 15 C -0.01 -0.63 6.48 40.56 0.26 -0.37 16 16 C -0.24 -8.08 10.62 67.12 0.71 -7.36 16 17 S 0.28 7.51 22.92 -56.49 -1.29 6.22 16 18 C 0.00 -0.16 6.85 88.57 0.61 0.45 16 19 C 0.15 4.38 7.36 85.55 0.63 5.01 16 20 N -0.83 -22.34 9.61 -190.01 -1.83 -24.17 16 21 N -0.40 -17.30 5.87 -180.83 -1.06 -18.36 16 22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.08 3.05 8.04 -2.38 -0.02 3.03 16 26 H 0.07 2.63 7.53 -2.38 -0.02 2.61 16 27 H 0.00 0.26 8.02 -2.39 -0.02 0.25 16 28 H 0.07 3.81 5.28 -2.38 -0.01 3.79 16 29 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16 30 H 0.19 5.76 8.04 -2.91 -0.02 5.74 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 33 H 0.36 7.76 9.08 -89.69 -0.81 6.94 16 34 H 0.34 10.62 8.98 -89.70 -0.81 9.81 16 Total: -1.00 -64.29 306.69 0.72 -63.57 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -0.48 Total: 19.96 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 5.20 Total: 14.09 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -4.67 Total: -120.25 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.07 Total: -28.42 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: 7.51 SS G_CDS: -1.29 Total: 6.22 kcal Total: -64.29 0.72 -63.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085545098.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.301 kcal (2) G-P(sol) polarization free energy of solvation -64.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds