Wall clock time and date at job start Mon Mar 30 2020 04:52:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46499 * 109.47352 * 2 1
4 4 C 1.46496 * 120.00024 * 265.11475 * 3 2 1
5 5 C 1.50702 * 109.47345 * 263.17486 * 4 3 2
6 6 H 1.08001 * 119.99899 * 0.02562 * 5 4 3
7 7 C 1.37876 * 119.99979 * 179.97438 * 5 4 3
8 8 N 1.31514 * 119.99846 * 0.02562 * 7 5 4
9 9 Si 1.86794 * 119.99983 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47186 * 60.00122 * 9 7 5
11 11 H 1.48498 * 109.47356 * 180.02562 * 9 7 5
12 12 H 1.48503 * 109.47022 * 300.00294 * 9 7 5
13 13 C 1.34776 * 120.00007 * 85.11810 * 3 2 1
14 14 O 1.21639 * 119.99874 * 3.43421 * 13 3 2
15 15 C 1.47269 * 120.00433 * 183.43181 * 13 3 2
16 16 C 1.35207 * 123.14023 * 173.48126 * 15 13 3
17 17 S 1.70945 * 108.82189 * 179.73903 * 16 15 13
18 18 C 1.70773 * 91.13118 * 0.33885 * 17 16 15
19 19 C 1.50695 * 124.72416 * 179.91605 * 18 17 16
20 20 N 1.46903 * 109.47141 * 269.70247 * 19 18 17
21 21 N 1.28654 * 110.55730 * 359.65760 * 18 17 16
22 22 H 1.08999 * 109.47087 * 179.97438 * 1 2 3
23 23 H 1.09005 * 109.46976 * 299.99978 * 1 2 3
24 24 H 1.08998 * 109.46762 * 59.99728 * 1 2 3
25 25 H 1.09005 * 109.46976 * 240.00022 * 2 1 3
26 26 H 1.09004 * 109.47436 * 120.00324 * 2 1 3
27 27 H 1.09002 * 109.47020 * 23.18107 * 4 3 2
28 28 H 1.09004 * 109.46647 * 143.17639 * 4 3 2
29 29 H 0.97002 * 119.99470 * 180.02562 * 8 7 5
30 30 H 1.07993 * 125.58961 * 0.02562 * 16 15 13
31 31 H 1.08993 * 109.47329 * 149.70126 * 19 18 17
32 32 H 1.09008 * 109.46693 * 29.69667 * 19 18 17
33 33 H 1.00903 * 111.00051 * 179.97438 * 20 19 18
34 34 H 1.00894 * 110.99876 * 303.95157 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.3644 2.0357 -1.2641
5 6 3.8503 1.9319 -1.4933
6 1 4.4744 1.4283 -0.7699
7 6 4.4128 2.4789 -2.6271
8 7 3.6527 3.0917 -3.5081
9 14 6.2544 2.3496 -2.9116
10 1 6.6468 0.9186 -2.9711
11 1 6.6052 3.0132 -4.1929
12 1 6.9754 3.0146 -1.7966
13 6 2.1494 2.0496 1.1630
14 8 1.9220 1.4866 2.2170
15 6 2.5679 3.4616 1.1577
16 6 2.5965 4.2282 2.2711
17 16 3.1419 5.7926 1.8497
18 6 3.2905 5.3361 0.2108
19 6 3.7566 6.2474 -0.8952
20 7 2.5988 6.9307 -1.4873
21 7 2.9543 4.1044 0.0526
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5139 0.8900
24 1 -0.3633 0.5139 -0.8900
25 1 1.8933 -0.5139 -0.8900
26 1 1.8934 -0.5139 0.8900
27 1 1.8354 1.5477 -2.0827
28 1 2.0761 3.0860 -1.2201
29 1 4.0485 3.4763 -4.3059
30 1 2.3244 3.9039 3.2646
31 1 4.2625 5.6598 -1.6612
32 1 4.4468 6.9873 -0.4897
33 1 2.8853 7.5485 -2.2318
34 1 1.9137 6.2653 -1.8127
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000085545098.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:39
Heat of formation + Delta-G solvation = 0.729571 kcal
Electronic energy + Delta-G solvation = -19102.313581 eV
Core-core repulsion = 16161.709493 eV
Total energy + Delta-G solvation = -2940.604089 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 269.094 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.52143 -39.62685 -36.95609 -35.62129 -34.59547 -32.14585 -31.14028 -28.79875
-27.50079 -26.04392 -24.82784 -23.42768 -21.39335 -20.30564 -19.15662 -18.38655
-17.49103 -17.19777 -16.66219 -16.32497 -16.22344 -15.80078 -15.63176 -14.88422
-14.49817 -14.41704 -14.13255 -13.78760 -13.54451 -13.30112 -13.17036 -13.08116
-12.82017 -12.70863 -12.55307 -12.14073 -11.82087 -11.66674 -11.04986 -10.61476
-10.43280 -10.02922 -9.77876 -9.65927 -9.35639 -8.04668 -6.10070 -0.36892
0.45090 0.76218 1.15275 1.37631 1.39565 1.46009 2.32036 2.46201
2.51883 3.15228 3.27028 3.80967 3.88792 4.10098 4.23626 4.35710
4.39660 4.47848 4.51794 4.74789 4.80791 4.89870 4.99088 5.11426
5.24283 5.53143 5.86897 5.93963 6.04435 6.27626 6.52297 6.54086
6.76167 6.96964 7.28426 7.53280 9.01738
Molecular weight = 269.09amu
Principal moments of inertia in cm(-1)
A = 0.011680 B = 0.011528 C = 0.006954
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2396.775479 B = 2428.183930 C = 4025.319149
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.106 3.894
3 N -0.586 5.586
4 C 0.247 3.753
5 C -0.506 4.506
6 H 0.027 0.973
7 C 0.039 3.961
8 N -0.907 5.907
9 Si 0.932 3.068
10 H -0.281 1.281
11 H -0.278 1.278
12 H -0.280 1.280
13 C 0.579 3.421
14 O -0.592 6.592
15 C -0.015 4.015
16 C -0.241 4.241
17 S 0.284 5.716
18 C -0.005 4.005
19 C 0.145 3.855
20 N -0.834 5.834
21 N -0.404 5.404
22 H 0.091 0.909
23 H 0.043 0.957
24 H 0.051 0.949
25 H 0.080 0.920
26 H 0.067 0.933
27 H 0.005 0.995
28 H 0.073 0.927
29 H 0.261 0.739
30 H 0.194 0.806
31 H 0.038 0.962
32 H 0.114 0.886
33 H 0.358 0.642
34 H 0.342 0.658
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.892 7.206 5.805 9.445
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.017 4.017
3 N -0.314 5.314
4 C 0.127 3.873
5 C -0.545 4.545
6 H 0.046 0.954
7 C -0.161 4.161
8 N -0.547 5.547
9 Si 0.759 3.241
10 H -0.207 1.207
11 H -0.203 1.203
12 H -0.206 1.206
13 C 0.366 3.634
14 O -0.476 6.476
15 C -0.151 4.151
16 C -0.384 4.384
17 S 0.542 5.458
18 C -0.284 4.284
19 C 0.011 3.989
20 N -0.365 5.365
21 N -0.119 5.119
22 H 0.110 0.890
23 H 0.062 0.938
24 H 0.071 0.929
25 H 0.098 0.902
26 H 0.086 0.914
27 H 0.023 0.977
28 H 0.090 0.910
29 H 0.070 0.930
30 H 0.212 0.788
31 H 0.057 0.943
32 H 0.132 0.868
33 H 0.173 0.827
34 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -1.881 8.002 6.828 10.686
hybrid contribution 1.090 -1.938 -1.363 2.608
sum -0.791 6.064 5.464 8.201
Atomic orbital electron populations
1.22003 0.94359 1.03245 1.01225 1.21508 0.95470 0.82276 1.02403
1.48268 1.61175 1.13930 1.08015 1.19629 0.94478 0.95032 0.78196
1.21201 0.93242 1.35044 1.05010 0.95442 1.25195 1.00170 0.95006
0.95688 1.69993 1.35849 1.37928 1.10958 0.86037 0.82735 0.78034
0.77257 1.20697 1.20315 1.20629 1.17493 0.77136 0.85192 0.83545
1.90650 1.55579 1.69590 1.31736 1.20429 1.08470 0.96853 0.89345
1.26863 1.07134 0.99894 1.04508 1.82000 1.55331 1.06514 1.01982
1.27595 1.05483 0.94798 1.00554 1.20190 0.93139 0.93471 0.92085
1.58857 1.13304 1.24368 1.39998 1.67611 1.10259 1.05996 1.28037
0.88978 0.93791 0.92942 0.90168 0.91449 0.97707 0.91012 0.93020
0.78837 0.94346 0.86783 0.82737 0.84601
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.86 10.21 71.98 0.73 -4.13 16
2 C 0.11 4.13 6.08 86.38 0.52 4.66 16
3 N -0.59 -27.06 2.49 -830.19 -2.06 -29.12 16
4 C 0.25 12.55 4.74 85.63 0.41 12.96 16
5 C -0.51 -27.50 8.16 25.60 0.21 -27.29 16
6 H 0.03 1.58 7.81 -2.91 -0.02 1.56 16
7 C 0.04 2.08 5.46 84.65 0.46 2.55 16
8 N -0.91 -48.89 13.29 21.45 0.28 -48.60 16
9 Si 0.93 42.82 29.54 68.60 2.03 44.85 16
10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16
12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
13 C 0.58 26.97 7.55 86.62 0.65 27.62 16
14 O -0.59 -28.36 16.36 -4.16 -0.07 -28.42 16
15 C -0.01 -0.63 6.48 40.56 0.26 -0.37 16
16 C -0.24 -8.08 10.62 67.12 0.71 -7.36 16
17 S 0.28 7.51 22.92 -56.49 -1.29 6.22 16
18 C 0.00 -0.16 6.85 88.57 0.61 0.45 16
19 C 0.15 4.38 7.36 85.55 0.63 5.01 16
20 N -0.83 -22.34 9.61 -190.01 -1.83 -24.17 16
21 N -0.40 -17.30 5.87 -180.83 -1.06 -18.36 16
22 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16
23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16
24 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
25 H 0.08 3.05 8.04 -2.38 -0.02 3.03 16
26 H 0.07 2.63 7.53 -2.38 -0.02 2.61 16
27 H 0.00 0.26 8.02 -2.39 -0.02 0.25 16
28 H 0.07 3.81 5.28 -2.38 -0.01 3.79 16
29 H 0.26 13.42 8.31 -92.71 -0.77 12.65 16
30 H 0.19 5.76 8.04 -2.91 -0.02 5.74 16
31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
32 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16
33 H 0.36 7.76 9.08 -89.69 -0.81 6.94 16
34 H 0.34 10.62 8.98 -89.70 -0.81 9.81 16
Total: -1.00 -64.29 306.69 0.72 -63.57
By element:
Atomic # 1 Polarization: 20.44 SS G_CDS: -0.48 Total: 19.96 kcal
Atomic # 6 Polarization: 8.88 SS G_CDS: 5.20 Total: 14.09 kcal
Atomic # 7 Polarization: -115.59 SS G_CDS: -4.67 Total: -120.25 kcal
Atomic # 8 Polarization: -28.36 SS G_CDS: -0.07 Total: -28.42 kcal
Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal
Atomic # 16 Polarization: 7.51 SS G_CDS: -1.29 Total: 6.22 kcal
Total: -64.29 0.72 -63.57 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000085545098.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.301 kcal
(2) G-P(sol) polarization free energy of solvation -64.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.717 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.572 kcal
(6) G-S(sol) free energy of system = (1) + (5) 0.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds