Wall clock time and date at job start Mon Mar 30 2020 04:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.47037 * 2 1 4 4 H 1.08995 * 109.47318 * 55.00281 * 3 2 1 5 5 C 1.50704 * 109.46921 * 175.00096 * 3 2 1 6 6 H 1.07996 * 119.99831 * 119.99771 * 5 3 2 7 7 C 1.37876 * 119.99598 * 299.99818 * 5 3 2 8 8 N 1.31516 * 120.00508 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99677 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47080 * 90.00083 * 9 7 5 11 11 H 1.48500 * 109.47100 * 210.00171 * 9 7 5 12 12 H 1.48498 * 109.47240 * 330.00170 * 9 7 5 13 13 N 1.46501 * 109.46846 * 294.99682 * 3 2 1 14 14 C 1.34777 * 119.99690 * 85.00417 * 13 3 2 15 15 O 1.21627 * 119.99921 * 0.02562 * 14 13 3 16 16 C 1.47270 * 119.99843 * 179.97438 * 14 13 3 17 17 C 1.35203 * 123.13772 * 179.97438 * 16 14 13 18 18 S 1.70945 * 108.82234 * 179.71996 * 17 16 14 19 19 C 1.70770 * 91.13012 * 0.33613 * 18 17 16 20 20 C 1.50697 * 124.71795 * 179.97438 * 19 18 17 21 21 N 1.46905 * 109.47110 * 269.69786 * 20 19 18 22 22 N 1.28642 * 110.55577 * 359.65392 * 19 18 17 23 23 H 1.08993 * 109.46978 * 60.00235 * 1 2 3 24 24 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46588 * 299.99806 * 1 2 3 26 26 H 1.09003 * 109.46746 * 239.99732 * 2 1 3 27 27 H 1.09006 * 109.46729 * 119.99974 * 2 1 3 28 28 H 0.97001 * 120.00120 * 179.97438 * 8 7 5 29 29 H 0.96999 * 120.00189 * 265.00128 * 13 3 2 30 30 H 1.08002 * 125.59028 * 359.97438 * 17 16 14 31 31 H 1.09002 * 109.47000 * 149.69783 * 20 19 18 32 32 H 1.08995 * 109.47308 * 29.69924 * 20 19 18 33 33 H 1.00901 * 110.99869 * 180.02562 * 21 20 19 34 34 H 1.00896 * 110.99543 * 303.95619 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3366 2.1729 9 14 6.0051 0.8799 1.3811 10 1 6.4429 2.1128 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6132 0.8393 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3413 2.6326 -0.4314 16 6 0.0458 3.3231 -2.6252 17 6 -1.1577 3.9108 -2.8101 18 16 -1.2164 4.5627 -4.3893 19 6 0.3645 4.0048 -4.7148 20 6 1.0936 4.2043 -6.0184 21 7 0.8176 3.0716 -6.9123 22 7 0.8487 3.3963 -3.6900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8901 28 1 3.8294 -0.0619 2.9495 29 1 2.2720 2.1230 -1.9978 30 1 -1.9504 3.9637 -2.0785 31 1 2.1654 4.2653 -5.8296 32 1 0.7541 5.1280 -6.4870 33 1 1.2960 3.1817 -7.7938 34 1 1.0642 2.1969 -6.4741 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085545462.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:03 Heat of formation + Delta-G solvation = -0.949803 kcal Electronic energy + Delta-G solvation = -18270.001485 eV Core-core repulsion = 15329.324573 eV Total energy + Delta-G solvation = -2940.676912 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18175 -38.29928 -35.20438 -34.84345 -32.33070 -30.95686 -30.23370 -27.25481 -26.54772 -24.49288 -22.80381 -21.08436 -19.76331 -19.37915 -18.49549 -16.77691 -16.36302 -15.63674 -15.43725 -15.13888 -14.81907 -14.63424 -14.21518 -13.52746 -13.23204 -12.92985 -12.67395 -12.50941 -12.03769 -11.81013 -11.47876 -11.22883 -10.95321 -10.82996 -10.31247 -10.16066 -9.88389 -9.65744 -9.62071 -9.22567 -9.09426 -9.02962 -8.82104 -8.47922 -7.79027 -6.10401 -4.19327 0.60477 1.27166 1.68074 2.23906 3.26144 3.32603 3.35029 3.81629 3.96709 4.21845 4.41165 4.47023 4.81283 5.14309 5.20989 5.28826 5.37985 5.53757 6.07787 6.41237 6.48285 6.66569 6.67802 7.05356 7.07033 7.20079 7.37166 7.44049 7.50602 7.65936 7.78330 7.92702 8.19168 8.70090 8.78697 9.12168 9.47580 10.95091 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.004983 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.035267 B = 5618.295497 C = 6319.845756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.268 3.732 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.685 5.685 14 C 0.575 3.425 15 O -0.544 6.544 16 C 0.022 3.978 17 C -0.233 4.233 18 S 0.210 5.790 19 C 0.017 3.983 20 C 0.141 3.859 21 N -0.845 5.845 22 N -0.436 5.436 23 H 0.037 0.963 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.032 0.968 27 H 0.100 0.900 28 H 0.264 0.736 29 H 0.397 0.603 30 H 0.188 0.812 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.349 0.651 34 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 7.223 -16.170 18.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.167 3.833 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.332 5.332 14 C 0.356 3.644 15 O -0.423 6.423 16 C -0.113 4.113 17 C -0.375 4.375 18 S 0.466 5.534 19 C -0.263 4.263 20 C 0.008 3.992 21 N -0.377 5.377 22 N -0.152 5.152 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.050 0.950 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.230 0.770 30 H 0.205 0.795 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.163 0.837 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.518 7.636 -15.834 19.119 hybrid contribution 2.537 -0.683 0.717 2.723 sum -4.981 6.953 -15.118 17.370 Atomic orbital electron populations 1.21845 0.98376 0.98103 1.01184 1.21937 0.92607 0.99668 1.02375 1.18873 0.94401 0.89281 0.80786 0.93148 1.21225 0.90612 1.38952 1.06298 0.92044 1.24876 0.98615 0.94780 0.95354 1.69894 1.35115 1.37659 1.09353 0.86447 0.84859 0.77616 0.78177 1.20576 1.21059 1.19858 1.46382 1.14023 1.54059 1.18697 1.17054 0.83392 0.79257 0.84655 1.90780 1.51946 1.60859 1.38728 1.20886 0.91073 1.03886 0.95441 1.26628 1.03120 1.05101 1.02654 1.82632 1.14892 1.50716 1.05151 1.26882 0.97351 1.02750 0.99270 1.20197 0.97453 0.95364 0.86216 1.58715 1.66902 1.04912 1.07190 1.66932 1.33725 1.15642 0.98935 0.94403 0.95760 0.93085 0.94965 0.88137 0.92571 0.76958 0.79503 0.92024 0.88888 0.83687 0.83614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.86 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 6.98 2.24 -69.08 -0.15 6.82 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.43 8.73 -34.44 -0.30 -14.73 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.95 11.29 55.43 0.63 -24.32 16 9 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.69 -15.46 5.02 -56.06 -0.28 -15.74 16 14 C 0.57 12.46 6.36 -12.59 -0.08 12.38 16 15 O -0.54 -13.12 13.85 5.25 0.07 -13.05 16 16 C 0.02 0.40 6.70 -84.53 -0.57 -0.17 16 17 C -0.23 -3.41 10.62 29.65 0.31 -3.09 16 18 S 0.21 2.28 22.92 -107.50 -2.46 -0.19 16 19 C 0.02 0.21 6.85 -13.62 -0.09 0.12 16 20 C 0.14 1.26 7.36 -4.97 -0.04 1.22 16 21 N -0.84 -6.90 9.61 -11.41 -0.11 -7.01 16 22 N -0.44 -6.91 10.12 -8.51 -0.09 -7.00 16 23 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 1.23 7.84 -51.93 -0.41 0.83 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 29 H 0.40 8.37 8.06 -40.82 -0.33 8.04 16 30 H 0.19 2.56 8.03 -52.49 -0.42 2.14 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.35 1.94 9.08 -39.29 -0.36 1.59 16 34 H 0.35 3.17 8.98 -39.29 -0.35 2.82 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -30.96 301.56 -7.65 -38.62 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -4.09 Total: 10.17 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.84 Total: -1.90 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.15 Total: -54.07 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.05 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.46 Total: -0.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.96 -7.65 -38.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085545462.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.666 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds