Wall clock time and date at job start Mon Mar 30 2020 04:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 109.47037 * 2 1 4 4 H 1.08995 * 109.47318 * 55.00281 * 3 2 1 5 5 C 1.50704 * 109.46921 * 175.00096 * 3 2 1 6 6 H 1.07996 * 119.99831 * 119.99771 * 5 3 2 7 7 C 1.37876 * 119.99598 * 299.99818 * 5 3 2 8 8 N 1.31516 * 120.00508 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99677 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47080 * 90.00083 * 9 7 5 11 11 H 1.48500 * 109.47100 * 210.00171 * 9 7 5 12 12 H 1.48498 * 109.47240 * 330.00170 * 9 7 5 13 13 N 1.46501 * 109.46846 * 294.99682 * 3 2 1 14 14 C 1.34777 * 119.99690 * 85.00417 * 13 3 2 15 15 O 1.21627 * 119.99921 * 0.02562 * 14 13 3 16 16 C 1.47270 * 119.99843 * 179.97438 * 14 13 3 17 17 C 1.35203 * 123.13772 * 179.97438 * 16 14 13 18 18 S 1.70945 * 108.82234 * 179.71996 * 17 16 14 19 19 C 1.70770 * 91.13012 * 0.33613 * 18 17 16 20 20 C 1.50697 * 124.71795 * 179.97438 * 19 18 17 21 21 N 1.46905 * 109.47110 * 269.69786 * 20 19 18 22 22 N 1.28642 * 110.55577 * 359.65392 * 19 18 17 23 23 H 1.08993 * 109.46978 * 60.00235 * 1 2 3 24 24 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46588 * 299.99806 * 1 2 3 26 26 H 1.09003 * 109.46746 * 239.99732 * 2 1 3 27 27 H 1.09006 * 109.46729 * 119.99974 * 2 1 3 28 28 H 0.97001 * 120.00120 * 179.97438 * 8 7 5 29 29 H 0.96999 * 120.00189 * 265.00128 * 13 3 2 30 30 H 1.08002 * 125.59028 * 359.97438 * 17 16 14 31 31 H 1.09002 * 109.47000 * 149.69783 * 20 19 18 32 32 H 1.08995 * 109.47308 * 29.69924 * 20 19 18 33 33 H 1.00901 * 110.99869 * 180.02562 * 21 20 19 34 34 H 1.00896 * 110.99543 * 303.95619 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4443 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4063 0.3366 2.1729 9 14 6.0051 0.8799 1.3811 10 1 6.4429 2.1128 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6132 0.8393 0.0270 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6643 -1.3670 15 8 -0.3413 2.6326 -0.4314 16 6 0.0458 3.3231 -2.6252 17 6 -1.1577 3.9108 -2.8101 18 16 -1.2164 4.5627 -4.3893 19 6 0.3645 4.0048 -4.7148 20 6 1.0936 4.2043 -6.0184 21 7 0.8176 3.0716 -6.9123 22 7 0.8487 3.3963 -3.6900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8901 28 1 3.8294 -0.0619 2.9495 29 1 2.2720 2.1230 -1.9978 30 1 -1.9504 3.9637 -2.0785 31 1 2.1654 4.2653 -5.8296 32 1 0.7541 5.1280 -6.4870 33 1 1.2960 3.1817 -7.7938 34 1 1.0642 2.1969 -6.4741 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085545462.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:03 Heat of formation + Delta-G solvation = -25.712445 kcal Electronic energy + Delta-G solvation = -18271.075273 eV Core-core repulsion = 15329.324573 eV Total energy + Delta-G solvation = -2941.750700 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.51000 -39.84361 -37.00854 -35.72507 -34.32282 -32.84375 -31.35622 -29.16896 -27.55471 -25.95698 -24.63171 -22.41075 -21.46969 -20.83285 -19.92017 -18.45283 -17.46416 -17.10816 -16.97135 -16.54161 -16.21405 -15.89218 -15.69479 -14.89400 -14.72166 -14.62410 -13.87203 -13.78927 -13.50506 -13.27863 -13.19915 -12.97209 -12.87382 -12.71131 -12.19628 -12.09549 -11.63676 -11.11340 -11.01991 -10.85467 -10.69582 -10.56028 -9.98213 -9.71501 -9.61438 -8.18495 -6.36061 -0.48491 0.29236 0.62716 0.97163 1.43027 1.43559 1.54600 2.33687 2.41751 2.58469 3.00028 3.10748 3.77044 3.82038 4.16506 4.27511 4.41590 4.45160 4.52847 4.60778 4.70961 4.88822 5.02910 5.21145 5.39222 5.50054 5.56944 5.74531 5.85788 6.02888 6.12071 6.41489 6.54640 6.69547 6.93127 7.27812 7.45040 8.87157 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.023347 B = 0.004983 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.035267 B = 5618.295497 C = 6319.845756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.276 3.724 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.972 3.028 10 H -0.277 1.277 11 H -0.280 1.280 12 H -0.263 1.263 13 N -0.687 5.687 14 C 0.572 3.428 15 O -0.579 6.579 16 C -0.011 4.011 17 C -0.244 4.244 18 S 0.318 5.682 19 C 0.007 3.993 20 C 0.141 3.859 21 N -0.847 5.847 22 N -0.463 5.463 23 H 0.037 0.963 24 H 0.049 0.951 25 H 0.030 0.970 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.267 0.733 29 H 0.404 0.596 30 H 0.190 0.810 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.365 0.635 34 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.994 8.164 -18.828 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.203 1.203 11 H -0.205 1.205 12 H -0.187 1.187 13 N -0.334 5.334 14 C 0.357 3.643 15 O -0.460 6.460 16 C -0.146 4.146 17 C -0.387 4.387 18 S 0.576 5.424 19 C -0.272 4.272 20 C 0.007 3.993 21 N -0.380 5.380 22 N -0.181 5.181 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.095 0.905 28 H 0.076 0.924 29 H 0.239 0.761 30 H 0.207 0.793 31 H 0.080 0.920 32 H 0.140 0.860 33 H 0.181 0.819 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.429 8.601 -18.556 21.760 hybrid contribution 2.385 -0.878 1.436 2.919 sum -5.044 7.723 -17.121 19.448 Atomic orbital electron populations 1.21677 0.96902 0.99333 1.00159 1.21782 0.93847 0.98874 1.01355 1.18497 0.93957 0.89369 0.80887 0.97926 1.21513 0.91228 1.39322 1.06821 0.91611 1.25752 1.03461 0.94152 0.94825 1.70035 1.37114 1.38112 1.09814 0.85353 0.78891 0.77616 0.78521 1.20290 1.20535 1.18747 1.46164 1.14926 1.54576 1.17712 1.17592 0.82384 0.78443 0.85929 1.90742 1.52668 1.62068 1.40545 1.20305 0.92891 1.06597 0.94820 1.26915 1.02107 1.04251 1.05464 1.82257 1.12146 1.47409 1.00634 1.27560 0.98774 1.01365 0.99531 1.20388 0.97273 0.96698 0.84901 1.58729 1.67190 1.04401 1.07715 1.66882 1.34413 1.17442 0.99322 0.94364 0.93236 0.95107 0.94368 0.90470 0.92421 0.76141 0.79267 0.92004 0.86015 0.81923 0.84275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.83 8.51 71.99 0.61 -5.22 16 2 C -0.12 -6.19 5.45 30.60 0.17 -6.02 16 3 C 0.28 15.00 2.24 44.25 0.10 15.09 16 4 H 0.00 0.18 7.58 -2.39 -0.02 0.16 16 5 C -0.55 -30.55 8.73 25.60 0.22 -30.33 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -52.97 11.29 21.45 0.24 -52.73 16 9 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 13 N -0.69 -32.14 5.02 -449.51 -2.26 -34.40 16 14 C 0.57 25.68 6.36 86.62 0.55 26.23 16 15 O -0.58 -29.21 13.85 -4.12 -0.06 -29.27 16 16 C -0.01 -0.38 6.70 40.56 0.27 -0.11 16 17 C -0.24 -6.86 10.62 67.12 0.71 -6.15 16 18 S 0.32 5.83 22.92 -56.49 -1.29 4.53 16 19 C 0.01 0.16 6.85 88.57 0.61 0.77 16 20 C 0.14 2.07 7.36 85.56 0.63 2.70 16 21 N -0.85 -11.44 9.61 -190.00 -1.83 -13.26 16 22 N -0.46 -14.31 10.12 -180.84 -1.83 -16.14 16 23 H 0.04 1.77 5.64 -2.39 -0.01 1.76 16 24 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.03 1.54 7.84 -2.39 -0.02 1.52 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 4.37 5.95 -2.38 -0.01 4.36 16 28 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.40 17.52 8.06 -92.71 -0.75 16.78 16 30 H 0.19 5.08 8.03 -2.91 -0.02 5.05 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.36 2.98 9.08 -89.69 -0.81 2.16 16 34 H 0.35 5.55 8.98 -89.70 -0.81 4.74 16 Total: -1.00 -69.43 301.56 -1.88 -71.30 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: -1.21 Total: 26.45 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.32 Total: -1.57 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -5.67 Total: -116.54 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.06 Total: -29.27 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 16 Polarization: 5.83 SS G_CDS: -1.29 Total: 4.53 kcal Total: -69.43 -1.88 -71.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085545462.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.592 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds