Wall clock time and date at job start Mon Mar 30 2020 04:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21627 * 120.00319 * 0.02562 * 14 13 3 16 16 C 1.47272 * 119.99900 * 179.97438 * 14 13 3 17 17 C 1.35200 * 123.13980 * 179.73351 * 16 14 13 18 18 S 1.70944 * 108.82822 * 179.90534 * 17 16 14 19 19 C 1.70775 * 91.12626 * 0.29724 * 18 17 16 20 20 C 1.50699 * 124.71643 * 179.81824 * 19 18 17 21 21 N 1.46895 * 109.47507 * 270.00439 * 20 19 18 22 22 N 1.28646 * 110.55973 * 359.82814 * 19 18 17 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 29 29 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 30 30 H 1.08001 * 125.58912 * 0.02562 * 17 16 14 31 31 H 1.08999 * 109.47514 * 30.00755 * 20 19 18 32 32 H 1.09001 * 109.46758 * 150.00686 * 20 19 18 33 33 H 1.00899 * 111.00544 * 180.02562 * 21 20 19 34 34 H 1.00909 * 110.99887 * 303.95711 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3418 2.6318 0.4318 16 6 0.0454 3.3223 2.6256 17 6 -1.1559 3.9149 2.8086 18 16 -1.2199 4.5546 4.3925 19 6 0.3633 4.0020 4.7159 20 6 1.0914 4.1992 6.0205 21 7 1.8417 5.4613 5.9767 22 7 0.8478 3.3941 3.6909 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8292 -0.0604 -2.9503 29 1 2.2720 2.1231 1.9978 30 1 -1.9464 3.9728 2.0750 31 1 0.3706 4.2332 6.8374 32 1 1.7822 3.3712 6.1797 33 1 2.3394 5.6164 6.8406 34 1 2.4715 5.4804 5.1885 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085545465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:06 Heat of formation + Delta-G solvation = -0.996192 kcal Electronic energy + Delta-G solvation = -18265.145146 eV Core-core repulsion = 15324.466223 eV Total energy + Delta-G solvation = -2940.678923 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18096 -38.29952 -35.20402 -34.84216 -32.33071 -30.95980 -30.23228 -27.25614 -26.54613 -24.49272 -22.80646 -21.08512 -19.76446 -19.37964 -18.49491 -16.77361 -16.36497 -15.65850 -15.34532 -15.22406 -14.84125 -14.59887 -14.16792 -13.63815 -13.14455 -12.92420 -12.68058 -12.53511 -12.02686 -11.81643 -11.48297 -11.23536 -10.94903 -10.83128 -10.30357 -10.16513 -9.88450 -9.65423 -9.62762 -9.22571 -9.08995 -9.01953 -8.82008 -8.48577 -7.79044 -6.10667 -4.19439 0.60468 1.27254 1.68094 2.23902 3.25079 3.32813 3.36115 3.81526 3.97137 4.21574 4.41741 4.46976 4.81290 5.14284 5.20845 5.28650 5.37978 5.53763 6.07788 6.40727 6.47768 6.67120 6.67570 7.05981 7.06607 7.19801 7.36937 7.43912 7.50518 7.66024 7.78152 7.92633 8.18975 8.70050 8.78810 9.12160 9.47513 10.94922 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.022670 B = 0.005111 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.836049 B = 5476.899813 C = 6407.995618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.268 3.732 4 H 0.051 0.949 5 C -0.531 4.531 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.685 5.685 14 C 0.575 3.425 15 O -0.544 6.544 16 C 0.022 3.978 17 C -0.233 4.233 18 S 0.210 5.790 19 C 0.017 3.983 20 C 0.142 3.858 21 N -0.845 5.845 22 N -0.436 5.436 23 H 0.050 0.950 24 H 0.037 0.963 25 H 0.023 0.977 26 H 0.031 0.969 27 H 0.101 0.899 28 H 0.264 0.736 29 H 0.397 0.603 30 H 0.188 0.812 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.349 0.651 34 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 7.151 16.215 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.166 3.834 4 H 0.069 0.931 5 C -0.570 4.570 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.332 5.332 14 C 0.356 3.644 15 O -0.423 6.423 16 C -0.113 4.113 17 C -0.375 4.375 18 S 0.466 5.534 19 C -0.263 4.263 20 C 0.008 3.992 21 N -0.377 5.377 22 N -0.152 5.152 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.119 0.881 28 H 0.074 0.926 29 H 0.230 0.770 30 H 0.205 0.795 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.163 0.837 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.517 7.650 15.850 19.138 hybrid contribution 2.362 -1.096 -0.567 2.665 sum -5.155 6.554 15.283 17.410 Atomic orbital electron populations 1.21845 0.98379 0.98093 1.01191 1.21934 0.92612 0.99682 1.02378 1.18878 0.94429 0.89271 0.80795 0.93136 1.21263 0.90606 1.38841 1.06281 0.91987 1.24882 0.98631 0.94802 0.95353 1.69907 1.35017 1.37773 1.09332 0.86392 0.84861 0.77752 0.78100 1.19752 1.20865 1.20878 1.46381 1.14034 1.54047 1.18699 1.17054 0.83396 0.79252 0.84653 1.90780 1.51930 1.60835 1.38768 1.20888 0.91217 1.03785 0.95401 1.26627 1.03322 1.04770 1.02785 1.82634 1.14549 1.51057 1.05139 1.26889 0.97509 1.02172 0.99696 1.20193 0.96754 0.92307 0.89960 1.58713 1.35304 1.34409 1.09318 1.66939 1.33525 1.15853 0.98913 0.93072 0.94407 0.95767 0.94968 0.88135 0.92630 0.76957 0.79504 0.88897 0.92052 0.83684 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.18 5.45 -26.74 -0.15 -3.33 16 3 C 0.27 6.97 2.24 -69.08 -0.15 6.81 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.39 8.73 -34.44 -0.30 -14.69 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.95 11.30 55.43 0.63 -24.32 16 9 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 N -0.69 -15.46 5.02 -56.06 -0.28 -15.74 16 14 C 0.57 12.46 6.36 -12.59 -0.08 12.38 16 15 O -0.54 -13.12 13.84 5.25 0.07 -13.04 16 16 C 0.02 0.39 6.70 -84.52 -0.57 -0.17 16 17 C -0.23 -3.41 10.62 29.65 0.31 -3.09 16 18 S 0.21 2.28 22.92 -107.50 -2.46 -0.19 16 19 C 0.02 0.21 6.85 -13.61 -0.09 0.12 16 20 C 0.14 1.26 7.36 -4.98 -0.04 1.22 16 21 N -0.85 -7.00 9.61 -11.41 -0.11 -7.11 16 22 N -0.44 -6.92 10.12 -8.51 -0.09 -7.00 16 23 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 24 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.10 2.74 5.95 -51.93 -0.31 2.44 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.40 8.37 8.06 -40.82 -0.33 8.04 16 30 H 0.19 2.56 8.03 -52.49 -0.42 2.14 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.35 1.98 9.08 -39.29 -0.36 1.62 16 34 H 0.35 3.25 8.99 -39.29 -0.35 2.89 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -30.98 301.56 -7.65 -38.63 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -4.09 Total: 10.24 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.84 Total: -1.90 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.15 Total: -54.17 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -2.46 Total: -0.19 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.98 -7.65 -38.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085545465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.638 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds