Wall clock time and date at job start Mon Mar 30 2020 04:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47557 * 2 1 4 4 N 1.46899 * 109.47203 * 120.00413 * 2 1 3 5 5 C 1.50703 * 109.46892 * 240.00164 * 2 1 3 6 6 N 1.28648 * 124.71818 * 104.72631 * 5 2 1 7 7 C 1.33560 * 115.76514 * 179.78321 * 6 5 2 8 8 C 1.47271 * 123.14216 * 180.23160 * 7 6 5 9 9 O 1.21629 * 119.99857 * 173.48142 * 8 7 6 10 10 N 1.34772 * 120.00149 * 353.48843 * 8 7 6 11 11 C 1.46499 * 119.99888 * 2.77769 * 10 8 7 12 12 C 1.46497 * 120.00184 * 182.77363 * 10 8 7 13 13 C 1.50707 * 109.46529 * 90.00012 * 12 10 8 14 14 H 1.07992 * 120.00303 * 359.97438 * 13 12 10 15 15 C 1.37882 * 119.99641 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99926 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00077 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47205 * 59.99799 * 17 15 13 19 19 H 1.48501 * 109.47377 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46910 * 300.00287 * 17 15 13 21 21 C 1.35207 * 113.71569 * 0.49845 * 7 6 5 22 22 S 1.70769 * 124.72316 * 285.02514 * 5 2 1 23 23 H 1.09001 * 109.46838 * 300.00186 * 1 2 3 24 24 H 1.09008 * 109.47235 * 59.99544 * 1 2 3 25 25 H 1.08995 * 109.47703 * 179.97438 * 1 2 3 26 26 H 1.00895 * 110.99798 * 299.99561 * 4 2 1 27 27 H 1.00897 * 110.99912 * 63.95129 * 4 2 1 28 28 H 1.08995 * 109.47298 * 84.01315 * 11 10 8 29 29 H 1.09001 * 109.47177 * 204.01679 * 11 10 8 30 30 H 1.09002 * 109.47272 * 324.01285 * 11 10 8 31 31 H 1.08995 * 109.47595 * 209.99498 * 12 10 8 32 32 H 1.08998 * 109.47327 * 330.00303 * 12 10 8 33 33 H 0.97000 * 119.99657 * 179.97438 * 16 15 13 34 34 H 1.08007 * 125.58442 * 179.75901 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0322 -0.7104 -1.2305 6 7 2.5299 -0.1253 -2.2625 7 6 2.9239 -0.9304 -3.2527 8 6 3.5201 -0.4345 -4.5047 9 8 3.9672 -1.2202 -5.3183 10 7 3.5703 0.8900 -4.7489 11 6 3.0875 1.8391 -3.7428 12 6 4.1077 1.3806 -6.0203 13 6 2.9921 1.4928 -7.0273 14 1 1.9838 1.2250 -6.7482 15 6 3.2589 1.9364 -8.3052 16 7 4.4870 2.2620 -8.6453 17 14 1.8761 2.0761 -9.5532 18 1 0.8501 3.0251 -9.0510 19 1 2.4208 2.5734 -10.8421 20 1 1.2577 0.7417 -9.7584 21 6 2.7192 -2.2428 -3.0005 22 16 2.0134 -2.4036 -1.4520 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6962 -0.2351 2.0384 27 1 1.7502 -1.6649 1.1908 28 1 3.8777 2.0333 -3.0176 29 1 2.8041 2.7721 -4.2299 30 1 2.2213 1.4182 -3.2322 31 1 4.5608 2.3604 -5.8695 32 1 4.8613 0.6847 -6.3890 33 1 4.6747 2.5737 -9.5444 34 1 2.9621 -3.0564 -3.6681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085548139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:26 Heat of formation + Delta-G solvation = 20.701783 kcal Electronic energy + Delta-G solvation = -18258.272677 eV Core-core repulsion = 15318.534648 eV Total energy + Delta-G solvation = -2939.738028 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.30480 -38.16594 -36.27036 -34.79839 -32.52625 -30.44619 -28.90668 -28.04995 -25.92748 -25.48887 -23.77071 -21.94152 -20.60969 -19.03215 -17.72297 -16.73091 -16.46921 -15.79602 -15.43371 -15.08666 -14.70868 -14.36825 -14.08828 -13.87361 -13.41784 -13.15236 -12.82921 -12.38815 -12.22373 -12.04150 -12.02324 -11.83304 -11.44754 -11.15377 -10.88269 -10.53735 -10.14903 -9.67279 -9.65540 -9.41080 -9.23189 -9.04244 -8.77553 -8.39947 -7.54597 -6.00840 -4.05795 0.62778 1.24946 1.65417 2.27875 3.34380 3.38135 3.41438 3.66372 3.93492 4.14668 4.28705 4.48069 4.67154 4.84170 4.96848 5.27431 5.31635 5.35050 5.43853 5.58251 5.71125 5.88465 6.15010 6.30437 6.60107 6.67878 6.93903 7.11469 7.47342 7.51420 7.63551 7.95768 8.26284 8.45141 8.90459 9.08115 9.58771 11.07161 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.004621 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.250796 B = 6057.908776 C = 6284.564864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.166 3.834 3 H 0.114 0.886 4 N -0.839 5.839 5 C 0.026 3.974 6 N -0.426 5.426 7 C 0.029 3.971 8 C 0.575 3.425 9 O -0.539 6.539 10 N -0.580 5.580 11 C 0.081 3.919 12 C 0.243 3.757 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.899 3.101 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.229 4.229 22 S 0.187 5.813 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.353 0.647 27 H 0.339 0.661 28 H 0.042 0.958 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.264 0.736 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.384 -6.131 20.866 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.052 3.948 3 H 0.132 0.868 4 N -0.370 5.370 5 C -0.254 4.254 6 N -0.142 5.142 7 C -0.106 4.106 8 C 0.359 3.641 9 O -0.417 6.417 10 N -0.309 5.309 11 C -0.063 4.063 12 C 0.124 3.876 13 C -0.565 4.565 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.727 3.273 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.371 4.371 22 S 0.444 5.556 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.167 0.833 27 H 0.153 0.847 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.558 -6.480 20.573 22.855 hybrid contribution -1.329 0.349 -1.455 2.002 sum -8.888 -6.131 19.117 21.956 Atomic orbital electron populations 1.22673 0.95507 1.02757 1.03641 1.19842 0.92394 0.98262 0.84352 0.86834 1.58851 1.67646 1.06682 1.03841 1.27110 1.04167 0.94919 0.99181 1.67313 1.11419 1.35640 0.99862 1.20894 1.04074 0.89190 0.96424 1.17037 0.80220 0.83344 0.83547 1.90777 1.48638 1.55532 1.46749 1.48008 1.59384 1.04475 1.19045 1.22068 1.00089 0.93260 0.90838 1.19380 0.94991 0.95137 0.78059 1.21392 0.94668 1.44353 0.96131 0.92513 1.24933 0.95787 0.95248 0.98083 1.69930 1.18796 1.44624 1.20015 0.86542 0.82000 0.78457 0.80325 1.20242 1.21124 1.20197 1.26543 1.06812 1.01767 1.01936 1.82403 1.54802 1.08327 1.10114 0.91230 0.90921 0.92239 0.83260 0.84744 0.93958 0.91873 0.89222 0.94666 0.93664 0.92647 0.79459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 9.46 37.15 0.35 -0.92 16 2 C 0.17 1.46 3.89 -68.87 -0.27 1.19 16 3 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 4 N -0.84 -5.89 9.22 -5.65 -0.05 -5.94 16 5 C 0.03 0.32 6.27 -13.61 -0.09 0.23 16 6 N -0.43 -6.83 6.75 -8.51 -0.06 -6.88 16 7 C 0.03 0.53 6.49 -84.52 -0.55 -0.02 16 8 C 0.58 13.51 7.65 -12.59 -0.10 13.41 16 9 O -0.54 -14.43 16.29 5.25 0.09 -14.35 16 10 N -0.58 -13.77 2.86 -184.30 -0.53 -14.30 16 11 C 0.08 1.56 9.47 59.85 0.57 2.13 16 12 C 0.24 6.75 5.15 -5.19 -0.03 6.72 16 13 C -0.53 -15.53 9.39 -34.43 -0.32 -15.86 16 14 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 15 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 17 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 C -0.23 -3.50 10.62 29.65 0.31 -3.19 16 22 S 0.19 2.01 22.05 -107.50 -2.37 -0.36 16 23 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.35 1.63 9.04 -39.29 -0.36 1.27 16 27 H 0.34 2.03 8.20 -39.29 -0.32 1.71 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 1.20 8.03 -51.93 -0.42 0.78 16 30 H 0.09 1.60 5.26 -51.93 -0.27 1.33 16 31 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 32 H 0.05 1.39 7.38 -51.93 -0.38 1.01 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.19 2.73 8.04 -52.48 -0.42 2.31 16 LS Contribution 306.01 15.07 4.61 4.61 Total: -1.00 -34.71 306.01 -7.06 -41.77 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -4.25 Total: -0.83 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.21 Total: 5.41 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.10 Total: -53.57 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.09 Total: -14.35 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.37 Total: -0.36 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.71 -7.06 -41.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085548139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.469 kcal (2) G-P(sol) polarization free energy of solvation -34.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds