Wall clock time and date at job start Mon Mar 30 2020 04:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47557 * 2 1 4 4 N 1.46899 * 109.47203 * 120.00413 * 2 1 3 5 5 C 1.50703 * 109.46892 * 240.00164 * 2 1 3 6 6 N 1.28648 * 124.71818 * 104.72631 * 5 2 1 7 7 C 1.33560 * 115.76514 * 179.78321 * 6 5 2 8 8 C 1.47271 * 123.14216 * 180.23160 * 7 6 5 9 9 O 1.21629 * 119.99857 * 173.48142 * 8 7 6 10 10 N 1.34772 * 120.00149 * 353.48843 * 8 7 6 11 11 C 1.46499 * 119.99888 * 2.77769 * 10 8 7 12 12 C 1.46497 * 120.00184 * 182.77363 * 10 8 7 13 13 C 1.50707 * 109.46529 * 90.00012 * 12 10 8 14 14 H 1.07992 * 120.00303 * 359.97438 * 13 12 10 15 15 C 1.37882 * 119.99641 * 180.02562 * 13 12 10 16 16 N 1.31518 * 119.99926 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00077 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47205 * 59.99799 * 17 15 13 19 19 H 1.48501 * 109.47377 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46910 * 300.00287 * 17 15 13 21 21 C 1.35207 * 113.71569 * 0.49845 * 7 6 5 22 22 S 1.70769 * 124.72316 * 285.02514 * 5 2 1 23 23 H 1.09001 * 109.46838 * 300.00186 * 1 2 3 24 24 H 1.09008 * 109.47235 * 59.99544 * 1 2 3 25 25 H 1.08995 * 109.47703 * 179.97438 * 1 2 3 26 26 H 1.00895 * 110.99798 * 299.99561 * 4 2 1 27 27 H 1.00897 * 110.99912 * 63.95129 * 4 2 1 28 28 H 1.08995 * 109.47298 * 84.01315 * 11 10 8 29 29 H 1.09001 * 109.47177 * 204.01679 * 11 10 8 30 30 H 1.09002 * 109.47272 * 324.01285 * 11 10 8 31 31 H 1.08995 * 109.47595 * 209.99498 * 12 10 8 32 32 H 1.08998 * 109.47327 * 330.00303 * 12 10 8 33 33 H 0.97000 * 119.99657 * 179.97438 * 16 15 13 34 34 H 1.08007 * 125.58442 * 179.75901 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0322 -0.7104 -1.2305 6 7 2.5299 -0.1253 -2.2625 7 6 2.9239 -0.9304 -3.2527 8 6 3.5201 -0.4345 -4.5047 9 8 3.9672 -1.2202 -5.3183 10 7 3.5703 0.8900 -4.7489 11 6 3.0875 1.8391 -3.7428 12 6 4.1077 1.3806 -6.0203 13 6 2.9921 1.4928 -7.0273 14 1 1.9838 1.2250 -6.7482 15 6 3.2589 1.9364 -8.3052 16 7 4.4870 2.2620 -8.6453 17 14 1.8761 2.0761 -9.5532 18 1 0.8501 3.0251 -9.0510 19 1 2.4208 2.5734 -10.8421 20 1 1.2577 0.7417 -9.7584 21 6 2.7192 -2.2428 -3.0005 22 16 2.0134 -2.4036 -1.4520 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6962 -0.2351 2.0384 27 1 1.7502 -1.6649 1.1908 28 1 3.8777 2.0333 -3.0176 29 1 2.8041 2.7721 -4.2299 30 1 2.2213 1.4182 -3.2322 31 1 4.5608 2.3604 -5.8695 32 1 4.8613 0.6847 -6.3890 33 1 4.6747 2.5737 -9.5444 34 1 2.9621 -3.0564 -3.6681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085548139.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:26 Heat of formation + Delta-G solvation = -6.087622 kcal Electronic energy + Delta-G solvation = -18259.434353 eV Core-core repulsion = 15318.534648 eV Total energy + Delta-G solvation = -2940.899704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.66225 -39.74301 -37.04059 -36.72905 -34.72869 -31.56626 -30.08439 -29.53983 -27.49657 -26.95509 -25.34139 -23.43674 -21.66799 -20.40726 -19.16707 -18.72623 -17.67003 -17.27825 -16.89489 -16.66598 -16.29443 -15.63896 -15.22013 -15.08262 -14.51493 -14.34727 -14.14526 -13.93704 -13.77685 -13.64435 -13.26801 -13.09359 -12.87708 -12.77961 -12.58050 -12.29871 -12.23058 -11.77978 -11.08437 -10.72282 -10.67721 -10.44642 -9.98487 -9.70584 -9.44589 -8.25402 -6.41583 -0.51375 0.23326 0.55947 0.95804 1.35037 1.39795 1.47717 2.21451 2.36169 2.41234 2.81268 3.03598 3.62915 3.71343 4.03538 4.11989 4.19047 4.37117 4.51581 4.60284 4.75478 4.82152 4.93104 4.97894 5.15127 5.19658 5.21040 5.52432 5.78005 5.99919 6.08884 6.39230 6.54949 6.63678 6.67044 7.17097 7.33243 8.82042 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.030125 B = 0.004621 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.250796 B = 6057.908776 C = 6284.564864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.169 3.831 3 H 0.108 0.892 4 N -0.843 5.843 5 C 0.017 3.983 6 N -0.452 5.452 7 C -0.003 4.003 8 C 0.566 3.434 9 O -0.590 6.590 10 N -0.590 5.590 11 C 0.087 3.913 12 C 0.258 3.742 13 C -0.548 4.548 14 H 0.051 0.949 15 C 0.009 3.991 16 N -0.927 5.927 17 Si 0.973 3.027 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.276 1.276 21 C -0.245 4.245 22 S 0.309 5.691 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.069 0.931 26 H 0.369 0.631 27 H 0.347 0.653 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.026 0.974 32 H 0.002 0.998 33 H 0.269 0.731 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.817 -6.706 23.192 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.054 3.946 3 H 0.126 0.874 4 N -0.378 5.378 5 C -0.262 4.262 6 N -0.168 5.168 7 C -0.138 4.138 8 C 0.352 3.648 9 O -0.472 6.472 10 N -0.319 5.319 11 C -0.056 4.056 12 C 0.137 3.863 13 C -0.586 4.586 14 H 0.069 0.931 15 C -0.190 4.190 16 N -0.566 5.566 17 Si 0.796 3.204 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.202 1.202 21 C -0.388 4.388 22 S 0.567 5.433 23 H 0.111 0.889 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.186 0.814 27 H 0.161 0.839 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.126 0.874 31 H 0.044 0.956 32 H 0.020 0.980 33 H 0.078 0.922 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -10.016 -7.040 22.977 26.035 hybrid contribution -0.564 0.421 -1.998 2.118 sum -10.580 -6.618 20.979 24.410 Atomic orbital electron populations 1.22649 0.93688 1.03577 1.04148 1.19894 0.93549 0.97713 0.83454 0.87384 1.58802 1.67891 1.07233 1.03840 1.27813 1.02381 0.96850 0.99197 1.67157 1.13066 1.36221 1.00389 1.20182 1.07304 0.90582 0.95745 1.17752 0.79356 0.82650 0.85001 1.90717 1.50799 1.56562 1.49087 1.48034 1.59555 1.05765 1.18535 1.22218 1.01213 0.92210 0.89923 1.18892 0.93968 0.93412 0.80067 1.21606 0.94639 1.45116 0.97267 0.93080 1.25901 0.98640 0.94355 1.00096 1.70052 1.20932 1.44826 1.20809 0.85399 0.78725 0.78629 0.77638 1.18479 1.19869 1.20176 1.26838 1.06294 1.00740 1.04966 1.81951 1.51074 1.05333 1.04974 0.88854 0.92364 0.91242 0.81404 0.83920 0.92523 0.92190 0.87394 0.95578 0.97953 0.92171 0.79577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.46 71.98 0.68 -1.15 16 2 C 0.17 2.44 3.89 44.17 0.17 2.61 16 3 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 4 N -0.84 -8.69 9.22 -171.80 -1.58 -10.27 16 5 C 0.02 0.38 6.27 88.58 0.56 0.93 16 6 N -0.45 -14.08 6.75 -180.83 -1.22 -15.30 16 7 C 0.00 -0.13 6.49 40.56 0.26 0.14 16 8 C 0.57 27.94 7.65 86.62 0.66 28.61 16 9 O -0.59 -33.69 16.29 -4.12 -0.07 -33.76 16 10 N -0.59 -29.43 2.86 -855.23 -2.44 -31.87 16 11 C 0.09 3.39 9.47 127.77 1.21 4.60 16 12 C 0.26 15.15 5.15 85.64 0.44 15.60 16 13 C -0.55 -33.51 9.39 25.60 0.24 -33.27 16 14 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 15 C 0.01 0.56 5.46 84.66 0.46 1.02 16 16 N -0.93 -57.81 13.29 21.45 0.28 -57.52 16 17 Si 0.97 46.20 29.54 68.60 2.03 48.23 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 C -0.25 -7.33 10.62 67.12 0.71 -6.62 16 22 S 0.31 5.62 22.05 -56.49 -1.25 4.37 16 23 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 25 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.37 1.97 9.04 -89.70 -0.81 1.16 16 27 H 0.35 2.63 8.20 -89.70 -0.74 1.89 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.06 2.33 8.03 -2.39 -0.02 2.31 16 30 H 0.11 3.87 5.26 -2.39 -0.01 3.86 16 31 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 32 H 0.00 0.16 7.38 -2.39 -0.02 0.14 16 33 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 34 H 0.19 5.46 8.04 -2.91 -0.02 5.44 16 Total: -1.00 -79.51 306.01 0.74 -78.77 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -0.41 Total: 4.89 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 5.40 Total: 12.47 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.96 Total: -114.97 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.07 Total: -33.76 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.25 Total: 4.37 kcal Total: -79.51 0.74 -78.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085548139.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.681 kcal (2) G-P(sol) polarization free energy of solvation -79.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds