Wall clock time and date at job start Mon Mar 30 2020 04:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36837 * 120.00575 * 2 1 4 4 H 1.07997 * 120.00093 * 176.76252 * 3 2 1 5 5 C 1.39064 * 119.99580 * 357.03822 * 3 2 1 6 6 N 1.31356 * 119.99961 * 7.31993 * 5 3 2 7 7 Si 1.86800 * 119.99703 * 187.31749 * 5 3 2 8 8 H 1.48506 * 109.46910 * 90.00244 * 7 5 3 9 9 H 1.48498 * 109.46883 * 209.99860 * 7 5 3 10 10 H 1.48499 * 109.47359 * 330.00192 * 7 5 3 11 11 C 1.34784 * 119.99490 * 179.97438 * 2 1 3 12 12 O 1.21665 * 119.99536 * 185.72475 * 11 2 1 13 13 C 1.47025 * 120.00062 * 5.72355 * 11 2 1 14 14 S 1.77340 * 128.48414 * 275.01935 * 13 11 2 15 15 N 1.56633 * 95.28578 * 179.88975 * 14 13 11 16 16 N 1.27335 * 109.76236 * 0.38508 * 15 14 13 17 17 C 1.31226 * 120.04952 * 359.69729 * 16 15 14 18 18 C 1.50705 * 124.06619 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.46663 * 244.92508 * 18 17 16 20 20 C 1.53003 * 109.47091 * 4.92130 * 18 17 16 21 21 C 1.53001 * 109.47101 * 124.92457 * 18 17 16 22 22 H 1.09002 * 109.46241 * 58.16244 * 1 2 3 23 23 H 1.08993 * 109.47485 * 178.16143 * 1 2 3 24 24 H 1.09000 * 109.47020 * 298.17075 * 1 2 3 25 25 H 0.97001 * 120.00059 * 179.97438 * 6 5 3 26 26 H 1.08999 * 109.47677 * 64.59540 * 19 18 17 27 27 H 1.09002 * 109.47091 * 184.59447 * 19 18 17 28 28 H 1.08995 * 109.47429 * 304.59416 * 19 18 17 29 29 H 1.09005 * 109.46849 * 59.99961 * 20 18 17 30 30 H 1.09000 * 109.47185 * 180.02562 * 20 18 17 31 31 H 1.09000 * 109.47261 * 300.00274 * 20 18 17 32 32 H 1.08997 * 109.47243 * 65.80775 * 21 18 17 33 33 H 1.09000 * 109.46800 * 185.80619 * 21 18 17 34 34 H 1.08996 * 109.46726 * 305.80161 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1850 0.0000 4 1 3.2280 1.1856 0.0528 5 6 1.4554 2.3885 -0.0622 6 7 0.1447 2.3962 0.0240 7 14 2.3874 3.9943 -0.2683 8 1 2.5421 4.2947 -1.7145 9 1 1.6326 5.0922 0.3873 10 1 3.7283 3.8724 0.3581 11 6 2.1389 -1.1673 0.0005 12 8 3.3510 -1.1699 0.1056 13 6 1.4091 -2.4374 -0.1259 14 16 0.6370 -3.3982 1.1491 15 7 0.1226 -4.5243 0.1897 16 7 0.4755 -4.2657 -1.0061 17 6 1.1622 -3.1785 -1.2680 18 6 1.6253 -2.7841 -2.6468 19 6 3.1543 -2.8058 -2.6967 20 6 1.0675 -3.7715 -3.6740 21 6 1.1244 -1.3749 -2.9695 22 1 -0.3632 0.5421 -0.8731 23 1 -0.3634 -1.0270 -0.0330 24 1 -0.3633 0.4852 0.9059 25 1 -0.3393 3.2357 -0.0191 26 1 3.5084 -3.8258 -2.5475 27 1 3.4913 -2.4426 -3.6676 28 1 3.5526 -2.1644 -1.9106 29 1 -0.0219 -3.7561 -3.6383 30 1 1.4028 -3.4865 -4.6712 31 1 1.4244 -4.7754 -3.4440 32 1 1.6023 -0.6577 -2.3023 33 1 1.3702 -1.1297 -4.0027 34 1 0.0437 -1.3336 -2.8335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087445610.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:26 Heat of formation + Delta-G solvation = 42.578737 kcal Electronic energy + Delta-G solvation = -19447.363407 eV Core-core repulsion = 16508.574034 eV Total energy + Delta-G solvation = -2938.789373 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.65806 -38.50748 -36.33221 -34.96151 -31.96996 -30.64388 -27.84089 -26.91100 -26.65334 -26.09194 -24.54021 -22.47152 -20.51181 -18.92111 -17.45838 -17.23164 -16.51812 -15.37591 -15.06097 -14.61230 -14.20253 -14.18126 -13.60638 -13.40065 -13.10612 -12.39657 -12.15714 -12.03414 -11.94274 -11.82829 -11.40425 -11.25260 -11.16807 -11.08073 -10.85726 -10.72351 -10.51865 -10.49718 -10.32386 -9.73926 -9.30821 -9.25733 -9.17184 -8.69289 -8.16121 -6.54094 -4.04866 0.49064 1.26418 2.04408 2.56686 3.01901 3.12185 3.17108 3.61932 3.91113 4.26656 4.60663 4.87820 5.05705 5.26670 5.27015 5.50750 5.57166 5.87010 5.95038 5.98824 6.10742 6.12305 6.17891 6.31541 6.37919 6.47410 6.73301 6.80433 6.86097 7.15539 7.30740 7.74941 8.15740 8.18659 8.88555 9.09922 9.65083 10.39376 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.022960 B = 0.007399 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.238202 B = 3783.612727 C = 4272.484071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.411 5.411 3 C -0.298 4.298 4 H 0.113 0.887 5 C 0.032 3.968 6 N -0.871 5.871 7 Si 0.936 3.064 8 H -0.274 1.274 9 H -0.281 1.281 10 H -0.266 1.266 11 C 0.494 3.506 12 O -0.576 6.576 13 C -0.197 4.197 14 S 0.360 5.640 15 N -0.290 5.290 16 N -0.240 5.240 17 C 0.054 3.946 18 C 0.022 3.978 19 C -0.149 4.149 20 C -0.130 4.130 21 C -0.148 4.148 22 H 0.079 0.921 23 H 0.015 0.985 24 H 0.077 0.923 25 H 0.272 0.728 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 -5.120 -3.207 6.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.127 5.127 3 C -0.427 4.427 4 H 0.131 0.869 5 C -0.172 4.172 6 N -0.510 5.510 7 Si 0.762 3.238 8 H -0.199 1.199 9 H -0.207 1.207 10 H -0.191 1.191 11 C 0.280 3.720 12 O -0.462 6.462 13 C -0.338 4.338 14 S 0.497 5.503 15 N -0.268 5.268 16 N -0.107 5.107 17 C -0.091 4.091 18 C 0.018 3.982 19 C -0.207 4.207 20 C -0.188 4.188 21 C -0.206 4.206 22 H 0.097 0.903 23 H 0.034 0.966 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.972 -6.366 -2.058 6.975 hybrid contribution 0.681 1.565 -0.931 1.944 sum -1.291 -4.801 -2.989 5.801 Atomic orbital electron populations 1.21932 0.79874 0.96298 1.05234 1.43664 1.06307 1.04432 1.58316 1.19934 0.93612 0.81338 1.47771 0.86944 1.25446 0.95826 1.00111 0.95858 1.70146 1.06294 1.27935 1.46627 0.85749 0.79431 0.79783 0.78824 1.19947 1.20653 1.19051 1.16052 0.86479 0.80810 0.88687 1.90669 1.12527 1.85403 1.57641 1.28109 1.05242 1.04275 0.96207 1.82616 1.37054 1.10150 1.20481 1.78759 1.23714 1.23332 1.01002 1.70385 1.12563 1.17517 1.10219 1.22666 0.98634 0.90355 0.97422 1.19057 0.96274 0.96482 0.86390 1.22045 0.92700 1.02511 1.03457 1.21764 1.01166 0.98595 0.97252 1.22046 1.01339 0.94767 1.02437 0.90275 0.96640 0.90485 0.91708 0.92992 0.91938 0.89753 0.92343 0.92378 0.92207 0.90129 0.91863 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.38 8.76 59.85 0.52 2.91 16 2 N -0.41 -9.76 2.16 -123.57 -0.27 -10.03 16 3 C -0.30 -7.52 9.56 -15.01 -0.14 -7.66 16 4 H 0.11 2.97 7.17 -52.49 -0.38 2.59 16 5 C 0.03 0.77 5.44 -17.45 -0.09 0.68 16 6 N -0.87 -20.77 9.45 55.50 0.52 -20.25 16 7 Si 0.94 18.99 29.56 -169.99 -5.02 13.96 16 8 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 9 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 10 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 11 C 0.49 11.49 5.07 -12.70 -0.06 11.43 16 12 O -0.58 -15.03 15.16 5.22 0.08 -14.96 16 13 C -0.20 -3.97 4.28 -35.98 -0.15 -4.13 16 14 S 0.36 6.27 23.37 -107.50 -2.51 3.75 16 15 N -0.29 -5.30 12.51 60.35 0.75 -4.55 16 16 N -0.24 -4.51 10.67 33.44 0.36 -4.15 16 17 C 0.05 1.02 5.56 -82.80 -0.46 0.56 16 18 C 0.02 0.37 0.80 -155.66 -0.12 0.24 16 19 C -0.15 -2.47 8.40 37.16 0.31 -2.16 16 20 C -0.13 -1.83 7.88 37.16 0.29 -1.53 16 21 C -0.15 -2.52 8.16 37.16 0.30 -2.21 16 22 H 0.08 1.77 6.96 -51.93 -0.36 1.41 16 23 H 0.02 0.30 5.98 -51.93 -0.31 -0.01 16 24 H 0.08 1.74 7.13 -51.93 -0.37 1.37 16 25 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.08 1.67 5.59 -51.93 -0.29 1.38 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 32 H 0.08 1.62 5.55 -51.93 -0.29 1.33 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 291.74 15.07 4.40 4.40 Total: -1.00 -26.85 291.74 -5.39 -32.24 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -4.09 Total: 1.45 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 0.39 Total: -1.88 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 1.37 Total: -38.97 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.96 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Atomic # 16 Polarization: 6.27 SS G_CDS: -2.51 Total: 3.75 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.85 -5.39 -32.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087445610.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.821 kcal (2) G-P(sol) polarization free energy of solvation -26.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds