Wall clock time and date at job start Mon Mar 30 2020 04:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36837 * 120.00575 * 2 1 4 4 H 1.07997 * 120.00093 * 176.76252 * 3 2 1 5 5 C 1.39064 * 119.99580 * 357.03822 * 3 2 1 6 6 N 1.31356 * 119.99961 * 7.31993 * 5 3 2 7 7 Si 1.86800 * 119.99703 * 187.31749 * 5 3 2 8 8 H 1.48506 * 109.46910 * 90.00244 * 7 5 3 9 9 H 1.48498 * 109.46883 * 209.99860 * 7 5 3 10 10 H 1.48499 * 109.47359 * 330.00192 * 7 5 3 11 11 C 1.34784 * 119.99490 * 179.97438 * 2 1 3 12 12 O 1.21665 * 119.99536 * 185.72475 * 11 2 1 13 13 C 1.47025 * 120.00062 * 5.72355 * 11 2 1 14 14 S 1.77340 * 128.48414 * 275.01935 * 13 11 2 15 15 N 1.56633 * 95.28578 * 179.88975 * 14 13 11 16 16 N 1.27335 * 109.76236 * 0.38508 * 15 14 13 17 17 C 1.31226 * 120.04952 * 359.69729 * 16 15 14 18 18 C 1.50705 * 124.06619 * 180.02562 * 17 16 15 19 19 C 1.52996 * 109.46663 * 244.92508 * 18 17 16 20 20 C 1.53003 * 109.47091 * 4.92130 * 18 17 16 21 21 C 1.53001 * 109.47101 * 124.92457 * 18 17 16 22 22 H 1.09002 * 109.46241 * 58.16244 * 1 2 3 23 23 H 1.08993 * 109.47485 * 178.16143 * 1 2 3 24 24 H 1.09000 * 109.47020 * 298.17075 * 1 2 3 25 25 H 0.97001 * 120.00059 * 179.97438 * 6 5 3 26 26 H 1.08999 * 109.47677 * 64.59540 * 19 18 17 27 27 H 1.09002 * 109.47091 * 184.59447 * 19 18 17 28 28 H 1.08995 * 109.47429 * 304.59416 * 19 18 17 29 29 H 1.09005 * 109.46849 * 59.99961 * 20 18 17 30 30 H 1.09000 * 109.47185 * 180.02562 * 20 18 17 31 31 H 1.09000 * 109.47261 * 300.00274 * 20 18 17 32 32 H 1.08997 * 109.47243 * 65.80775 * 21 18 17 33 33 H 1.09000 * 109.46800 * 185.80619 * 21 18 17 34 34 H 1.08996 * 109.46726 * 305.80161 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1850 0.0000 4 1 3.2280 1.1856 0.0528 5 6 1.4554 2.3885 -0.0622 6 7 0.1447 2.3962 0.0240 7 14 2.3874 3.9943 -0.2683 8 1 2.5421 4.2947 -1.7145 9 1 1.6326 5.0922 0.3873 10 1 3.7283 3.8724 0.3581 11 6 2.1389 -1.1673 0.0005 12 8 3.3510 -1.1699 0.1056 13 6 1.4091 -2.4374 -0.1259 14 16 0.6370 -3.3982 1.1491 15 7 0.1226 -4.5243 0.1897 16 7 0.4755 -4.2657 -1.0061 17 6 1.1622 -3.1785 -1.2680 18 6 1.6253 -2.7841 -2.6468 19 6 3.1543 -2.8058 -2.6967 20 6 1.0675 -3.7715 -3.6740 21 6 1.1244 -1.3749 -2.9695 22 1 -0.3632 0.5421 -0.8731 23 1 -0.3634 -1.0270 -0.0330 24 1 -0.3633 0.4852 0.9059 25 1 -0.3393 3.2357 -0.0191 26 1 3.5084 -3.8258 -2.5475 27 1 3.4913 -2.4426 -3.6676 28 1 3.5526 -2.1644 -1.9106 29 1 -0.0219 -3.7561 -3.6383 30 1 1.4028 -3.4865 -4.6712 31 1 1.4244 -4.7754 -3.4440 32 1 1.6023 -0.6577 -2.3023 33 1 1.3702 -1.1297 -4.0027 34 1 0.0437 -1.3336 -2.8335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087445610.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:25 Heat of formation + Delta-G solvation = 27.293026 kcal Electronic energy + Delta-G solvation = -19448.026245 eV Core-core repulsion = 16508.574034 eV Total energy + Delta-G solvation = -2939.452211 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.16069 -40.29090 -37.69291 -36.82562 -33.79991 -32.18271 -29.33784 -28.39000 -28.14021 -27.54384 -26.29586 -24.01946 -22.02501 -20.52261 -19.09387 -18.87743 -18.26692 -16.98159 -16.71192 -16.08020 -15.90071 -15.86374 -14.90756 -14.80906 -14.78898 -13.97255 -13.78033 -13.70838 -13.27928 -13.17328 -12.92640 -12.81752 -12.74590 -12.57106 -12.39345 -12.16651 -12.12521 -12.00838 -11.70546 -11.22470 -11.07705 -10.85606 -10.73085 -10.41828 -10.01455 -8.35983 -5.96738 -1.04051 -0.24964 0.55323 1.07312 1.38040 1.45160 1.56522 1.88266 2.22346 2.77704 2.91237 3.06949 3.63639 3.77296 3.98655 3.99110 4.15099 4.39548 4.51657 4.73340 4.77654 4.86813 4.96250 5.02203 5.06302 5.13853 5.27053 5.33571 5.38478 5.41653 5.50250 5.89227 6.33536 6.66416 7.02905 7.27310 7.82321 8.56705 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.022960 B = 0.007399 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.238202 B = 3783.612727 C = 4272.484071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.420 5.420 3 C -0.334 4.334 4 H 0.089 0.911 5 C 0.006 3.994 6 N -0.883 5.883 7 Si 0.995 3.005 8 H -0.268 1.268 9 H -0.271 1.271 10 H -0.272 1.272 11 C 0.503 3.497 12 O -0.613 6.613 13 C -0.240 4.240 14 S 0.428 5.572 15 N -0.292 5.292 16 N -0.247 5.247 17 C 0.065 3.935 18 C 0.017 3.983 19 C -0.144 4.144 20 C -0.122 4.122 21 C -0.143 4.143 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.278 0.722 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 -5.694 -4.068 7.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.136 5.136 3 C -0.462 4.462 4 H 0.107 0.893 5 C -0.198 4.198 6 N -0.522 5.522 7 Si 0.818 3.182 8 H -0.193 1.193 9 H -0.196 1.196 10 H -0.197 1.197 11 C 0.290 3.710 12 O -0.501 6.501 13 C -0.382 4.382 14 S 0.564 5.436 15 N -0.271 5.271 16 N -0.112 5.112 17 C -0.081 4.081 18 C 0.013 3.987 19 C -0.202 4.202 20 C -0.180 4.180 21 C -0.201 4.201 22 H 0.087 0.913 23 H 0.051 0.949 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.751 -6.932 -2.918 8.008 hybrid contribution 0.885 1.624 -0.603 1.945 sum -1.866 -5.308 -3.521 6.637 Atomic orbital electron populations 1.21726 0.78847 0.96994 1.04018 1.43734 1.06904 1.04318 1.58650 1.19840 0.92971 0.82752 1.50637 0.89269 1.26101 0.96644 1.02179 0.94845 1.70204 1.06910 1.28869 1.46185 0.84899 0.78030 0.76409 0.78898 1.19312 1.19573 1.19674 1.16272 0.86106 0.81538 0.87111 1.90627 1.14375 1.86346 1.58789 1.27804 1.07889 1.04192 0.98284 1.82361 1.34846 1.08102 1.18284 1.78640 1.23434 1.23616 1.01372 1.70461 1.13086 1.17498 1.10199 1.23051 0.97346 0.89604 0.98081 1.19247 0.96326 0.96977 0.86167 1.21982 0.92608 1.02188 1.03429 1.21718 1.00999 0.97681 0.97573 1.21984 1.00854 0.94147 1.03070 0.91292 0.94894 0.91704 0.91178 0.92232 0.89520 0.93491 0.92366 0.89767 0.92126 0.93626 0.89365 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.56 8.76 127.77 1.12 6.68 16 2 N -0.42 -20.47 2.16 -663.09 -1.43 -21.90 16 3 C -0.33 -17.41 9.56 84.11 0.80 -16.61 16 4 H 0.09 4.97 7.17 -2.91 -0.02 4.94 16 5 C 0.01 0.27 5.44 84.96 0.46 0.74 16 6 N -0.88 -42.18 9.45 21.68 0.20 -41.97 16 7 Si 0.99 38.97 29.56 68.60 2.03 40.99 16 8 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 9 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 10 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 11 C 0.50 23.94 5.07 86.55 0.44 24.38 16 12 O -0.61 -33.22 15.16 -4.24 -0.06 -33.29 16 13 C -0.24 -9.62 4.28 24.61 0.11 -9.51 16 14 S 0.43 14.19 23.37 -56.49 -1.32 12.87 16 15 N -0.29 -10.05 12.51 37.02 0.46 -9.59 16 16 N -0.25 -8.77 10.67 -48.11 -0.51 -9.28 16 17 C 0.07 2.37 5.56 42.68 0.24 2.61 16 18 C 0.02 0.53 0.80 -52.93 -0.04 0.49 16 19 C -0.14 -4.63 8.40 71.98 0.60 -4.03 16 20 C -0.12 -3.08 7.88 71.98 0.57 -2.51 16 21 C -0.14 -4.71 8.16 71.98 0.59 -4.12 16 22 H 0.07 3.12 6.96 -2.39 -0.02 3.11 16 23 H 0.03 1.28 5.98 -2.39 -0.01 1.27 16 24 H 0.06 2.95 7.13 -2.39 -0.02 2.94 16 25 H 0.28 12.40 8.31 -92.71 -0.77 11.63 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 27 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.05 1.88 5.59 -2.39 -0.01 1.87 16 29 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 1.52 8.11 -2.39 -0.02 1.50 16 32 H 0.04 1.85 5.55 -2.39 -0.01 1.83 16 33 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -58.10 291.74 5.37 -52.73 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.12 Total: 11.32 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: 4.88 Total: -1.89 kcal Atomic # 7 Polarization: -81.46 SS G_CDS: -1.28 Total: -82.74 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.06 Total: -33.29 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 40.99 kcal Atomic # 16 Polarization: 14.19 SS G_CDS: -1.32 Total: 12.87 kcal Total: -58.10 5.37 -52.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087445610.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.027 kcal (2) G-P(sol) polarization free energy of solvation -58.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds