Wall clock time and date at job start Mon Mar 30 2020 04:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47208 * 179.97438 * 3 2 1 5 5 N 1.31226 * 124.06668 * 89.97518 * 4 3 2 6 6 N 1.27328 * 120.05551 * 180.02562 * 5 4 3 7 7 S 1.56633 * 109.75796 * 0.02562 * 6 5 4 8 8 C 1.38359 * 124.07225 * 270.01879 * 4 3 2 9 9 C 1.47029 * 128.47868 * 359.97438 * 8 4 3 10 10 O 1.21668 * 120.00206 * 353.48164 * 9 8 4 11 11 N 1.34779 * 119.99967 * 173.47875 * 9 8 4 12 12 C 1.36839 * 119.99751 * 4.47309 * 11 9 8 13 13 H 1.07995 * 120.00003 * 310.93130 * 12 11 9 14 14 C 1.39059 * 120.00235 * 130.93962 * 12 11 9 15 15 N 1.31365 * 119.99605 * 3.50312 * 14 12 11 16 16 Si 1.86794 * 120.00186 * 183.51017 * 14 12 11 17 17 H 1.48508 * 109.47110 * 59.99799 * 16 14 12 18 18 H 1.48497 * 109.47321 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47281 * 299.99721 * 16 14 12 20 20 C 1.46498 * 120.00312 * 184.46855 * 11 9 8 21 21 C 1.53001 * 109.47048 * 84.51933 * 20 11 9 22 22 H 1.08999 * 109.46811 * 300.00195 * 1 2 3 23 23 H 1.08994 * 109.46953 * 59.99758 * 1 2 3 24 24 H 1.08997 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47005 * 240.00541 * 2 1 3 26 26 H 1.09000 * 109.47341 * 120.00184 * 2 1 3 27 27 H 1.09008 * 109.47175 * 60.00273 * 3 2 1 28 28 H 1.08994 * 109.47399 * 299.99968 * 3 2 1 29 29 H 0.97005 * 119.99817 * 179.97438 * 15 14 12 30 30 H 1.09001 * 109.47499 * 204.52129 * 20 11 9 31 31 H 1.09009 * 109.46978 * 324.52473 * 20 11 9 32 32 H 1.09004 * 109.46964 * 180.02562 * 21 20 11 33 33 H 1.09001 * 109.47131 * 300.00422 * 21 20 11 34 34 H 1.09001 * 109.46951 * 60.00096 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2825 1.4419 -1.0861 6 7 5.5527 1.4415 -0.9965 7 16 5.9771 1.4412 0.5112 8 6 4.3217 1.4423 1.1470 9 6 3.8802 1.4426 2.5495 10 8 2.6990 1.5626 2.8155 11 7 4.7840 1.3098 3.5405 12 6 6.1198 1.2667 3.2469 13 1 6.4817 0.6053 2.4737 14 6 7.0114 2.0745 3.9443 15 7 6.5815 2.8277 4.9310 16 14 8.8201 2.0885 3.4780 17 1 8.9643 2.5298 2.0674 18 1 9.5532 3.0257 4.3666 19 1 9.3809 0.7218 3.6290 20 6 4.3363 1.2116 4.9319 21 6 3.9759 -0.2409 5.2504 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9564 0.8901 28 1 1.6767 1.9563 -0.8899 29 1 7.2035 3.3909 5.4177 30 1 5.1360 1.5414 5.5951 31 1 3.4600 1.8435 5.0771 32 1 3.6424 -0.3138 6.2856 33 1 3.1762 -0.5706 4.5872 34 1 4.8521 -0.8728 5.1052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087445612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:46 Heat of formation + Delta-G solvation = 18.811509 kcal Electronic energy + Delta-G solvation = -18978.244327 eV Core-core repulsion = 16038.424330 eV Total energy + Delta-G solvation = -2939.819997 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.05802 -38.59952 -35.32697 -34.63209 -32.17126 -31.34807 -29.99301 -27.07041 -25.94845 -25.21841 -22.95305 -21.41142 -20.59096 -19.40222 -17.71243 -17.33619 -16.01544 -15.12153 -14.88575 -14.76715 -14.57799 -14.06623 -13.70109 -13.26235 -12.88310 -12.76198 -12.23953 -12.10939 -11.97173 -11.86512 -11.40155 -11.23532 -11.08673 -11.04555 -10.96429 -10.70866 -10.57548 -10.22580 -10.07736 -9.61857 -9.00061 -8.88557 -8.82325 -8.81053 -7.70714 -6.72192 -4.60804 0.66350 1.83748 2.50872 2.75581 2.96940 3.02606 3.02880 3.77855 4.06253 4.43369 4.63490 4.71536 5.27984 5.40049 5.48808 5.61968 5.85306 6.03853 6.07948 6.12169 6.15813 6.18416 6.26613 6.31684 6.46726 6.61965 6.69849 6.74371 6.91306 6.96036 7.29869 7.67734 7.98296 8.53363 8.64064 9.11426 9.56222 10.23643 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.008474 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.060901 B = 3303.388636 C = 4444.985205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.032 4.032 4 C 0.052 3.948 5 N -0.265 5.265 6 N -0.345 5.345 7 S 0.454 5.546 8 C -0.240 4.240 9 C 0.546 3.454 10 O -0.580 6.580 11 N -0.421 5.421 12 C -0.347 4.347 13 H 0.094 0.906 14 C 0.065 3.935 15 N -0.840 5.840 16 Si 0.906 3.094 17 H -0.257 1.257 18 H -0.275 1.275 19 H -0.263 1.263 20 C 0.111 3.889 21 C -0.160 4.160 22 H 0.058 0.942 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.104 0.896 28 H 0.073 0.927 29 H 0.280 0.720 30 H 0.114 0.886 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.045 0.955 34 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 -3.165 -2.190 4.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.073 4.073 4 C -0.096 4.096 5 N -0.129 5.129 6 N -0.323 5.323 7 S 0.596 5.404 8 C -0.381 4.381 9 C 0.334 3.666 10 O -0.466 6.466 11 N -0.139 5.139 12 C -0.482 4.482 13 H 0.110 0.890 14 C -0.147 4.147 15 N -0.474 5.474 16 Si 0.730 3.270 17 H -0.182 1.182 18 H -0.200 1.200 19 H -0.187 1.187 20 C -0.012 4.012 21 C -0.218 4.218 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.122 0.878 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.132 0.868 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.839 -2.948 -3.137 4.386 hybrid contribution -0.211 0.061 0.550 0.592 sum -1.050 -2.887 -2.586 4.016 Atomic orbital electron populations 1.21718 0.95597 1.01253 1.01826 1.21388 0.95674 0.95978 1.01944 1.20168 0.84814 0.98271 1.04064 1.22695 0.99205 1.01531 0.86165 1.70615 0.97903 1.15756 1.28626 1.78315 1.09067 1.22212 1.22670 1.83485 1.10753 1.50641 0.95545 1.27746 0.97336 1.12630 1.00349 1.16906 0.86093 0.81219 0.82367 1.90640 1.16792 1.56213 1.82957 1.43296 1.05291 1.60589 1.04763 1.19390 0.82286 1.23814 1.22702 0.88960 1.25623 1.00947 0.93419 0.94706 1.69680 1.36848 1.22942 1.17882 0.86279 0.81213 0.79457 0.80091 1.18163 1.19951 1.18721 1.21560 1.01055 0.94424 0.84175 1.22104 1.00836 0.98847 1.00041 0.92283 0.92966 0.93041 0.92428 0.91707 0.87819 0.90801 0.90885 0.86842 0.92434 0.93047 0.93586 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.11 -1.76 5.92 -26.73 -0.16 -1.91 16 3 C -0.03 -0.57 5.30 -27.88 -0.15 -0.71 16 4 C 0.05 1.07 6.25 -82.81 -0.52 0.55 16 5 N -0.26 -5.56 11.54 33.44 0.39 -5.17 16 6 N -0.35 -7.20 12.51 60.35 0.75 -6.45 16 7 S 0.45 9.17 19.41 -107.50 -2.09 7.08 16 8 C -0.24 -5.26 6.55 -35.98 -0.24 -5.50 16 9 C 0.55 12.92 7.57 -12.70 -0.10 12.82 16 10 O -0.58 -14.26 14.52 5.22 0.08 -14.18 16 11 N -0.42 -9.88 2.50 -116.17 -0.29 -10.17 16 12 C -0.35 -7.93 7.13 -15.01 -0.11 -8.04 16 13 H 0.09 2.02 5.40 -36.36 -0.20 1.82 16 14 C 0.06 1.46 5.34 -17.45 -0.09 1.36 16 15 N -0.84 -19.82 11.06 55.50 0.61 -19.20 16 16 Si 0.91 17.26 29.55 -169.99 -5.02 12.24 16 17 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 18 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 19 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 20 C 0.11 2.43 5.60 -4.04 -0.02 2.41 16 21 C -0.16 -3.01 10.20 37.16 0.38 -2.63 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.10 1.97 6.36 -51.92 -0.33 1.64 16 28 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.28 6.20 8.31 -40.82 -0.34 5.86 16 30 H 0.11 2.60 5.60 -51.93 -0.29 2.31 16 31 H 0.06 1.31 7.53 -51.92 -0.39 0.91 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -25.78 298.66 -5.85 -31.63 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -4.15 Total: 2.90 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.63 Total: -3.17 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 1.46 Total: -40.99 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.08 Total: -14.18 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.02 Total: 12.24 kcal Atomic # 16 Polarization: 9.17 SS G_CDS: -2.09 Total: 7.08 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -25.78 -5.85 -31.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087445612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.438 kcal (2) G-P(sol) polarization free energy of solvation -25.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds