Wall clock time and date at job start Mon Mar 30 2020 04:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47208 * 179.97438 * 3 2 1 5 5 N 1.31226 * 124.06668 * 89.97518 * 4 3 2 6 6 N 1.27328 * 120.05551 * 180.02562 * 5 4 3 7 7 S 1.56633 * 109.75796 * 0.02562 * 6 5 4 8 8 C 1.38359 * 124.07225 * 270.01879 * 4 3 2 9 9 C 1.47029 * 128.47868 * 359.97438 * 8 4 3 10 10 O 1.21668 * 120.00206 * 353.48164 * 9 8 4 11 11 N 1.34779 * 119.99967 * 173.47875 * 9 8 4 12 12 C 1.36839 * 119.99751 * 4.47309 * 11 9 8 13 13 H 1.07995 * 120.00003 * 310.93130 * 12 11 9 14 14 C 1.39059 * 120.00235 * 130.93962 * 12 11 9 15 15 N 1.31365 * 119.99605 * 3.50312 * 14 12 11 16 16 Si 1.86794 * 120.00186 * 183.51017 * 14 12 11 17 17 H 1.48508 * 109.47110 * 59.99799 * 16 14 12 18 18 H 1.48497 * 109.47321 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47281 * 299.99721 * 16 14 12 20 20 C 1.46498 * 120.00312 * 184.46855 * 11 9 8 21 21 C 1.53001 * 109.47048 * 84.51933 * 20 11 9 22 22 H 1.08999 * 109.46811 * 300.00195 * 1 2 3 23 23 H 1.08994 * 109.46953 * 59.99758 * 1 2 3 24 24 H 1.08997 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47005 * 240.00541 * 2 1 3 26 26 H 1.09000 * 109.47341 * 120.00184 * 2 1 3 27 27 H 1.09008 * 109.47175 * 60.00273 * 3 2 1 28 28 H 1.08994 * 109.47399 * 299.99968 * 3 2 1 29 29 H 0.97005 * 119.99817 * 179.97438 * 15 14 12 30 30 H 1.09001 * 109.47499 * 204.52129 * 20 11 9 31 31 H 1.09009 * 109.46978 * 324.52473 * 20 11 9 32 32 H 1.09004 * 109.46964 * 180.02562 * 21 20 11 33 33 H 1.09001 * 109.47131 * 300.00422 * 21 20 11 34 34 H 1.09001 * 109.46951 * 60.00096 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2825 1.4419 -1.0861 6 7 5.5527 1.4415 -0.9965 7 16 5.9771 1.4412 0.5112 8 6 4.3217 1.4423 1.1470 9 6 3.8802 1.4426 2.5495 10 8 2.6990 1.5626 2.8155 11 7 4.7840 1.3098 3.5405 12 6 6.1198 1.2667 3.2469 13 1 6.4817 0.6053 2.4737 14 6 7.0114 2.0745 3.9443 15 7 6.5815 2.8277 4.9310 16 14 8.8201 2.0885 3.4780 17 1 8.9643 2.5298 2.0674 18 1 9.5532 3.0257 4.3666 19 1 9.3809 0.7218 3.6290 20 6 4.3363 1.2116 4.9319 21 6 3.9759 -0.2409 5.2504 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9564 0.8901 28 1 1.6767 1.9563 -0.8899 29 1 7.2035 3.3909 5.4177 30 1 5.1360 1.5414 5.5951 31 1 3.4600 1.8435 5.0771 32 1 3.6424 -0.3138 6.2856 33 1 3.1762 -0.5706 4.5872 34 1 4.8521 -0.8728 5.1052 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087445612.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:46 Heat of formation + Delta-G solvation = 4.898739 kcal Electronic energy + Delta-G solvation = -18978.847630 eV Core-core repulsion = 16038.424330 eV Total energy + Delta-G solvation = -2940.423300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.71452 -40.37783 -37.05399 -36.05038 -33.90856 -32.92579 -31.59797 -28.64846 -27.41686 -26.96257 -24.61203 -22.76894 -22.20545 -21.14467 -19.32123 -19.06193 -17.74596 -16.82552 -16.60858 -16.41339 -15.84820 -15.61777 -15.35743 -14.91723 -14.41869 -14.16946 -13.79363 -13.73856 -13.46617 -13.40885 -12.95343 -12.72166 -12.62133 -12.57791 -12.20338 -12.16056 -12.08285 -11.75916 -11.55236 -11.31007 -10.69210 -10.58857 -10.51318 -10.49345 -9.48966 -8.44358 -6.40267 -1.01904 0.18163 0.85352 1.10305 1.46194 1.48652 1.55494 2.17370 2.30156 2.72625 2.91194 3.12208 3.79844 4.09409 4.17974 4.23429 4.28602 4.46312 4.63316 4.74979 4.76013 4.80920 4.93724 5.01927 5.08478 5.20140 5.23868 5.27544 5.36872 5.44745 5.55805 5.92789 6.22587 6.86825 6.88720 7.32826 7.78079 8.52879 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.008474 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.060901 B = 3303.388636 C = 4444.985205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.032 4.032 4 C 0.060 3.940 5 N -0.273 5.273 6 N -0.348 5.348 7 S 0.491 5.509 8 C -0.272 4.272 9 C 0.537 3.463 10 O -0.600 6.600 11 N -0.430 5.430 12 C -0.364 4.364 13 H 0.101 0.899 14 C 0.033 3.967 15 N -0.869 5.869 16 Si 0.954 3.046 17 H -0.248 1.248 18 H -0.274 1.274 19 H -0.252 1.252 20 C 0.109 3.891 21 C -0.147 4.147 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.283 0.717 30 H 0.104 0.896 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 -3.732 -3.086 5.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C -0.073 4.073 4 C -0.089 4.089 5 N -0.137 5.137 6 N -0.325 5.325 7 S 0.632 5.368 8 C -0.412 4.412 9 C 0.325 3.675 10 O -0.488 6.488 11 N -0.148 5.148 12 C -0.498 4.498 13 H 0.118 0.882 14 C -0.176 4.176 15 N -0.503 5.503 16 Si 0.774 3.226 17 H -0.172 1.172 18 H -0.198 1.198 19 H -0.175 1.175 20 C -0.013 4.013 21 C -0.205 4.205 22 H 0.070 0.930 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.351 -3.526 -4.024 5.361 hybrid contribution -0.374 0.255 0.816 0.933 sum -0.725 -3.271 -3.208 4.638 Atomic orbital electron populations 1.21682 0.93189 1.02538 1.02394 1.21348 0.97732 0.94330 1.01049 1.20283 0.83104 0.99649 1.04273 1.23134 1.00419 0.99781 0.85552 1.70662 0.97874 1.16493 1.28674 1.78236 1.09310 1.21889 1.23103 1.83241 1.09563 1.49444 0.94563 1.27731 0.98801 1.14687 1.00021 1.17153 0.86004 0.81174 0.83136 1.90607 1.17470 1.57189 1.83516 1.43516 1.05735 1.60405 1.05137 1.19670 0.82155 1.24557 1.23389 0.88175 1.26329 1.04320 0.92710 0.94247 1.69768 1.38203 1.23608 1.18727 0.85550 0.76802 0.80004 0.80232 1.17165 1.19811 1.17541 1.21563 0.99921 0.96117 0.83721 1.21980 1.00516 0.96496 1.01521 0.92962 0.91141 0.91437 0.91813 0.94023 0.89402 0.88612 0.90622 0.87778 0.94064 0.90241 0.94503 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.91 71.98 0.71 -2.64 16 2 C -0.11 -3.23 5.92 30.59 0.18 -3.05 16 3 C -0.03 -1.11 5.30 29.85 0.16 -0.95 16 4 C 0.06 2.41 6.25 42.68 0.27 2.67 16 5 N -0.27 -11.09 11.54 -48.12 -0.56 -11.64 16 6 N -0.35 -13.96 12.51 37.02 0.46 -13.50 16 7 S 0.49 19.22 19.41 -56.49 -1.10 18.12 16 8 C -0.27 -11.89 6.55 24.61 0.16 -11.72 16 9 C 0.54 25.73 7.57 86.55 0.66 26.38 16 10 O -0.60 -30.16 14.52 -4.25 -0.06 -30.22 16 11 N -0.43 -20.36 2.50 -639.69 -1.60 -21.96 16 12 C -0.36 -16.50 7.13 84.11 0.60 -15.90 16 13 H 0.10 4.29 5.40 -13.17 -0.07 4.22 16 14 C 0.03 1.46 5.34 84.96 0.45 1.91 16 15 N -0.87 -41.04 11.06 21.68 0.24 -40.80 16 16 Si 0.95 33.94 29.55 68.60 2.03 35.97 16 17 H -0.25 -8.40 7.11 99.48 0.71 -7.70 16 18 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 19 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 20 C 0.11 4.87 5.60 86.38 0.48 5.36 16 21 C -0.15 -5.47 10.20 71.98 0.73 -4.73 16 22 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.09 3.34 6.36 -2.38 -0.02 3.32 16 28 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 29 H 0.28 12.52 8.31 -92.70 -0.77 11.75 16 30 H 0.10 4.84 5.60 -2.39 -0.01 4.83 16 31 H 0.04 1.92 7.53 -2.38 -0.02 1.91 16 32 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 33 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -54.05 298.66 4.88 -49.16 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.06 Total: 17.55 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 4.41 Total: -2.67 kcal Atomic # 7 Polarization: -86.45 SS G_CDS: -1.45 Total: -87.91 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.06 Total: -30.22 kcal Atomic # 14 Polarization: 33.94 SS G_CDS: 2.03 Total: 35.97 kcal Atomic # 16 Polarization: 19.22 SS G_CDS: -1.10 Total: 18.12 kcal Total: -54.05 4.88 -49.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087445612.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.063 kcal (2) G-P(sol) polarization free energy of solvation -54.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds