Wall clock time and date at job start Mon Mar 30 2020 04:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47199 * 2 1 4 4 C 1.50704 * 109.46970 * 180.02562 * 3 2 1 5 5 N 1.31237 * 124.05165 * 270.16984 * 4 3 2 6 6 N 1.27341 * 120.03392 * 180.33796 * 5 4 3 7 7 S 1.56641 * 109.74165 * 359.71547 * 6 5 4 8 8 C 1.38241 * 124.05789 * 89.99614 * 4 3 2 9 9 C 1.47171 * 128.47496 * 0.02562 * 8 4 3 10 10 O 1.21629 * 120.00148 * 359.69857 * 9 8 4 11 11 N 1.34784 * 120.00412 * 179.69931 * 9 8 4 12 12 C 1.46497 * 120.00075 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47049 * 324.99133 * 12 11 9 14 14 C 1.52997 * 109.47188 * 85.00024 * 12 11 9 15 15 C 1.50706 * 109.46582 * 204.99875 * 12 11 9 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 H 1.09000 * 109.47027 * 59.99959 * 1 2 3 24 24 H 1.08991 * 109.47411 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46446 * 300.00333 * 1 2 3 26 26 H 1.08998 * 109.46845 * 239.99379 * 2 1 3 27 27 H 1.09000 * 109.47027 * 120.00041 * 2 1 3 28 28 H 1.08998 * 109.47729 * 59.99920 * 3 2 1 29 29 H 1.09000 * 109.47164 * 299.99956 * 3 2 1 30 30 H 0.96996 * 119.99132 * 359.97438 * 11 9 8 31 31 H 1.09002 * 109.47153 * 299.99573 * 14 12 11 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 33 33 H 1.09004 * 109.47261 * 59.99745 * 14 12 11 34 34 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.2824 1.4390 1.0864 6 7 5.5526 1.4457 0.9967 7 16 5.9765 1.4501 -0.5113 8 6 4.3208 1.4424 -1.1463 9 6 3.8784 1.4431 -2.5499 10 8 2.6910 1.4381 -2.8134 11 7 4.7891 1.4492 -3.5436 12 6 4.3487 1.4492 -4.9408 13 1 3.4396 0.8554 -5.0352 14 6 4.0684 2.8856 -5.3871 15 6 5.4289 0.8555 -5.8079 16 1 6.3513 0.5128 -5.3627 17 6 5.2395 0.7498 -7.1695 18 7 6.1823 0.2321 -7.9262 19 14 3.6445 1.3431 -7.9395 20 1 3.7799 2.7722 -8.3198 21 1 3.3482 0.5347 -9.1494 22 1 2.5371 1.1941 -6.9613 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6768 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 5.7360 1.4535 -3.3334 31 1 3.2872 3.3150 -4.7599 32 1 3.7412 2.8856 -6.4268 33 1 4.9776 3.4794 -5.2926 34 1 6.0493 0.1580 -8.8842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087445630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:53 Heat of formation + Delta-G solvation = 22.916080 kcal Electronic energy + Delta-G solvation = -18311.590309 eV Core-core repulsion = 15371.948300 eV Total energy + Delta-G solvation = -2939.642009 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.97717 -39.10955 -35.54908 -34.95329 -32.62765 -31.85318 -30.19924 -27.66930 -26.58843 -25.29839 -23.08454 -21.70942 -20.73424 -19.94971 -18.40148 -17.73230 -16.27848 -15.94362 -15.56358 -15.03675 -14.88934 -14.44671 -14.24839 -13.48637 -13.32830 -13.06401 -12.80378 -12.60486 -12.30419 -11.97150 -11.79680 -11.48656 -11.36314 -11.31898 -10.90758 -10.65101 -10.29972 -10.27654 -9.87677 -9.80512 -9.69536 -9.50056 -9.35990 -8.87325 -8.40158 -6.29485 -4.33540 -0.22294 0.84268 1.48804 1.96401 3.16792 3.29330 3.30115 3.32106 3.49970 3.88325 4.23369 4.56828 4.97793 5.04599 5.05030 5.08316 5.17506 5.57646 5.66000 5.77909 5.84241 6.10890 6.18211 6.22807 6.25374 6.31195 6.41930 6.70628 6.97337 7.07782 7.35130 7.63456 7.92625 8.31623 8.51045 8.69478 9.29583 10.82415 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.005686 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.153640 B = 4923.207838 C = 5848.437230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.040 4.040 4 C 0.092 3.908 5 N -0.250 5.250 6 N -0.265 5.265 7 S 0.412 5.588 8 C -0.272 4.272 9 C 0.587 3.413 10 O -0.525 6.525 11 N -0.688 5.688 12 C 0.238 3.762 13 H 0.054 0.946 14 C -0.163 4.163 15 C -0.540 4.540 16 H 0.082 0.918 17 C 0.081 3.919 18 N -0.889 5.889 19 Si 0.885 3.115 20 H -0.275 1.275 21 H -0.293 1.293 22 H -0.261 1.261 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.395 0.605 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.697 2.687 13.575 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.081 4.081 4 C -0.055 4.055 5 N -0.116 5.116 6 N -0.246 5.246 7 S 0.548 5.452 8 C -0.413 4.413 9 C 0.369 3.631 10 O -0.403 6.403 11 N -0.336 5.336 12 C 0.135 3.865 13 H 0.072 0.928 14 C -0.221 4.221 15 C -0.578 4.578 16 H 0.100 0.900 17 C -0.124 4.124 18 N -0.525 5.525 19 Si 0.714 3.286 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.186 1.186 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.126 0.874 30 H 0.229 0.771 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.823 2.630 14.289 15.023 hybrid contribution -1.353 0.319 -1.039 1.736 sum -5.176 2.949 13.249 14.527 Atomic orbital electron populations 1.21718 0.95017 1.01782 1.02009 1.21416 0.96327 0.95048 1.02417 1.20373 0.83593 0.99285 1.04876 1.22909 0.99871 0.97592 0.85146 1.70579 0.96986 1.15903 1.28155 1.78826 1.09423 1.20396 1.15921 1.82657 1.10316 1.51064 1.01146 1.28115 0.97602 1.14793 1.00810 1.16550 0.86540 0.78246 0.81733 1.90771 1.15774 1.50939 1.82822 1.46182 1.08625 1.71425 1.07389 1.19230 0.97673 0.93352 0.76233 0.92801 1.22473 1.00329 0.99390 0.99943 1.20985 1.02612 1.42289 0.91869 0.90031 1.24812 0.96553 0.94194 0.96806 1.69860 1.33117 1.43731 1.05797 0.86889 0.84446 0.78295 0.78970 1.20203 1.22025 1.18572 0.92098 0.92615 0.92802 0.91250 0.92081 0.89805 0.87440 0.77150 0.94340 0.93120 0.92612 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.11 -1.37 5.92 -26.73 -0.16 -1.53 16 3 C -0.04 -0.51 5.23 -27.88 -0.15 -0.66 16 4 C 0.09 1.33 6.25 -82.84 -0.52 0.81 16 5 N -0.25 -3.72 11.54 33.42 0.39 -3.34 16 6 N -0.27 -3.79 12.51 60.35 0.75 -3.03 16 7 S 0.41 5.13 23.05 -107.50 -2.48 2.65 16 8 C -0.27 -4.09 6.80 -35.96 -0.24 -4.33 16 9 C 0.59 10.49 7.77 -12.63 -0.10 10.39 16 10 O -0.52 -10.54 14.56 5.25 0.08 -10.46 16 11 N -0.69 -12.85 5.07 -56.09 -0.28 -13.13 16 12 C 0.24 5.32 2.15 -69.08 -0.15 5.17 16 13 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 14 C -0.16 -3.41 8.96 37.16 0.33 -3.08 16 15 C -0.54 -13.86 9.31 -34.44 -0.32 -14.18 16 16 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 17 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 18 N -0.89 -25.40 13.96 55.43 0.77 -24.63 16 19 Si 0.88 20.77 24.37 -169.99 -4.14 16.62 16 20 H -0.28 -6.26 6.87 56.52 0.39 -5.87 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.26 -6.02 6.53 56.52 0.37 -5.66 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.11 1.49 6.47 -51.93 -0.34 1.15 16 30 H 0.39 6.49 7.97 -40.82 -0.33 6.17 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 299.08 15.07 4.51 4.51 Total: -1.00 -29.15 299.08 -5.59 -34.74 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.16 Total: 2.53 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.03 Total: -6.47 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 1.63 Total: -44.13 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.14 Total: 16.62 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -2.48 Total: 2.65 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.15 -5.59 -34.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087445630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.660 kcal (2) G-P(sol) polarization free energy of solvation -29.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds