Wall clock time and date at job start Mon Mar 30 2020 04:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47199 * 2 1 4 4 C 1.50704 * 109.46970 * 180.02562 * 3 2 1 5 5 N 1.31237 * 124.05165 * 270.16984 * 4 3 2 6 6 N 1.27341 * 120.03392 * 180.33796 * 5 4 3 7 7 S 1.56641 * 109.74165 * 359.71547 * 6 5 4 8 8 C 1.38241 * 124.05789 * 89.99614 * 4 3 2 9 9 C 1.47171 * 128.47496 * 0.02562 * 8 4 3 10 10 O 1.21629 * 120.00148 * 359.69857 * 9 8 4 11 11 N 1.34784 * 120.00412 * 179.69931 * 9 8 4 12 12 C 1.46497 * 120.00075 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47049 * 324.99133 * 12 11 9 14 14 C 1.52997 * 109.47188 * 85.00024 * 12 11 9 15 15 C 1.50706 * 109.46582 * 204.99875 * 12 11 9 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 H 1.09000 * 109.47027 * 59.99959 * 1 2 3 24 24 H 1.08991 * 109.47411 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46446 * 300.00333 * 1 2 3 26 26 H 1.08998 * 109.46845 * 239.99379 * 2 1 3 27 27 H 1.09000 * 109.47027 * 120.00041 * 2 1 3 28 28 H 1.08998 * 109.47729 * 59.99920 * 3 2 1 29 29 H 1.09000 * 109.47164 * 299.99956 * 3 2 1 30 30 H 0.96996 * 119.99132 * 359.97438 * 11 9 8 31 31 H 1.09002 * 109.47153 * 299.99573 * 14 12 11 32 32 H 1.09001 * 109.46832 * 179.97438 * 14 12 11 33 33 H 1.09004 * 109.47261 * 59.99745 * 14 12 11 34 34 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.2824 1.4390 1.0864 6 7 5.5526 1.4457 0.9967 7 16 5.9765 1.4501 -0.5113 8 6 4.3208 1.4424 -1.1463 9 6 3.8784 1.4431 -2.5499 10 8 2.6910 1.4381 -2.8134 11 7 4.7891 1.4492 -3.5436 12 6 4.3487 1.4492 -4.9408 13 1 3.4396 0.8554 -5.0352 14 6 4.0684 2.8856 -5.3871 15 6 5.4289 0.8555 -5.8079 16 1 6.3513 0.5128 -5.3627 17 6 5.2395 0.7498 -7.1695 18 7 6.1823 0.2321 -7.9262 19 14 3.6445 1.3431 -7.9395 20 1 3.7799 2.7722 -8.3198 21 1 3.3482 0.5347 -9.1494 22 1 2.5371 1.1941 -6.9613 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6768 1.9564 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 5.7360 1.4535 -3.3334 31 1 3.2872 3.3150 -4.7599 32 1 3.7412 2.8856 -6.4268 33 1 4.9776 3.4794 -5.2926 34 1 6.0493 0.1580 -8.8842 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087445630.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:53 Heat of formation + Delta-G solvation = 2.651735 kcal Electronic energy + Delta-G solvation = -18312.469037 eV Core-core repulsion = 15371.948300 eV Total energy + Delta-G solvation = -2940.520737 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.12367 -40.57875 -37.03692 -36.15723 -34.48260 -33.08027 -31.79175 -28.86768 -27.60238 -27.21361 -24.46857 -22.75845 -22.19311 -21.41490 -19.55946 -19.28108 -18.03518 -17.31720 -17.01444 -16.50138 -15.91512 -15.78346 -15.58652 -15.10764 -14.87865 -14.28135 -14.12873 -13.93849 -13.78662 -13.50691 -13.24256 -12.76810 -12.75431 -12.35669 -12.22939 -12.13711 -11.66101 -11.57551 -11.41934 -11.28985 -11.01934 -10.93458 -10.86417 -10.78391 -10.02453 -8.36557 -6.43458 -1.37769 -0.26715 0.38581 0.81295 1.30877 1.39383 1.47667 1.91168 2.07563 2.28072 2.76894 3.00021 3.44893 3.70432 4.03831 4.12006 4.17932 4.45606 4.56122 4.63800 4.68542 4.76720 4.86351 4.95779 4.99412 5.21318 5.27924 5.30962 5.38618 5.43244 5.52191 6.08593 6.49059 6.56862 6.67177 7.05861 7.25899 8.78367 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.021481 B = 0.005686 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.153640 B = 4923.207838 C = 5848.437230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.041 4.041 4 C 0.100 3.900 5 N -0.265 5.265 6 N -0.279 5.279 7 S 0.489 5.511 8 C -0.304 4.304 9 C 0.594 3.406 10 O -0.549 6.549 11 N -0.690 5.690 12 C 0.243 3.757 13 H 0.035 0.965 14 C -0.159 4.159 15 C -0.536 4.536 16 H 0.059 0.941 17 C 0.031 3.969 18 N -0.932 5.932 19 Si 0.936 3.064 20 H -0.260 1.260 21 H -0.295 1.295 22 H -0.256 1.256 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.405 0.595 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 3.544 14.850 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.082 4.082 4 C -0.048 4.048 5 N -0.130 5.130 6 N -0.259 5.259 7 S 0.626 5.374 8 C -0.445 4.445 9 C 0.378 3.622 10 O -0.429 6.429 11 N -0.339 5.339 12 C 0.139 3.861 13 H 0.053 0.947 14 C -0.217 4.217 15 C -0.574 4.574 16 H 0.077 0.923 17 C -0.169 4.169 18 N -0.571 5.571 19 Si 0.764 3.236 20 H -0.186 1.186 21 H -0.223 1.223 22 H -0.181 1.181 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.113 0.887 30 H 0.240 0.760 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.435 3.499 15.600 16.591 hybrid contribution -1.040 0.008 -1.339 1.696 sum -5.476 3.507 14.260 15.673 Atomic orbital electron populations 1.21699 0.93517 1.02476 1.02479 1.21381 0.97628 0.94377 1.01479 1.20442 0.82730 0.99744 1.05245 1.23169 1.00628 0.96190 0.84836 1.70657 0.97061 1.17036 1.28207 1.78649 1.09561 1.20265 1.17456 1.82404 1.07604 1.48344 0.99070 1.27781 0.99811 1.17497 0.99407 1.16688 0.85932 0.77099 0.82506 1.90754 1.16790 1.51742 1.83569 1.45957 1.09429 1.72220 1.06329 1.18901 0.95583 0.93885 0.77690 0.94741 1.22378 1.01350 0.98271 0.99659 1.21213 1.02516 1.41379 0.92272 0.92281 1.25530 0.99297 0.94533 0.97521 1.69972 1.35171 1.45738 1.06197 0.86043 0.81032 0.78552 0.78020 1.18557 1.22269 1.18056 0.92929 0.91853 0.91001 0.93659 0.91455 0.87709 0.88671 0.75964 0.92981 0.93788 0.91500 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.91 71.98 0.71 -2.00 16 2 C -0.11 -2.54 5.92 30.59 0.18 -2.36 16 3 C -0.04 -0.98 5.23 29.85 0.16 -0.83 16 4 C 0.10 2.74 6.25 42.65 0.27 3.01 16 5 N -0.26 -7.38 11.54 -48.18 -0.56 -7.93 16 6 N -0.28 -7.35 12.51 37.02 0.46 -6.89 16 7 S 0.49 11.12 23.05 -56.49 -1.30 9.82 16 8 C -0.30 -8.73 6.80 24.62 0.17 -8.56 16 9 C 0.59 20.71 7.77 86.59 0.67 21.39 16 10 O -0.55 -21.80 14.56 -4.12 -0.06 -21.86 16 11 N -0.69 -25.19 5.07 -449.61 -2.28 -27.47 16 12 C 0.24 10.72 2.15 44.25 0.10 10.82 16 13 H 0.03 1.67 6.63 -2.39 -0.02 1.66 16 14 C -0.16 -6.35 8.96 71.98 0.65 -5.70 16 15 C -0.54 -27.59 9.31 25.60 0.24 -27.35 16 16 H 0.06 3.24 7.98 -2.91 -0.02 3.21 16 17 C 0.03 1.69 5.45 84.66 0.46 2.15 16 18 N -0.93 -53.96 13.96 21.45 0.30 -53.66 16 19 Si 0.94 42.38 24.37 68.60 1.67 44.06 16 20 H -0.26 -11.05 6.87 99.48 0.68 -10.37 16 21 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.26 -11.31 6.53 99.48 0.65 -10.66 16 23 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.09 2.57 6.47 -2.39 -0.02 2.55 16 30 H 0.40 12.90 7.97 -92.71 -0.74 12.16 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.04 1.81 3.27 -2.39 -0.01 1.81 16 33 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.27 14.73 8.31 -92.70 -0.77 13.96 16 Total: -1.00 -61.60 299.08 2.15 -59.45 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.31 Total: 13.92 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 3.60 Total: -9.44 kcal Atomic # 7 Polarization: -93.88 SS G_CDS: -2.07 Total: -95.95 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.06 Total: -21.86 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.67 Total: 44.06 kcal Atomic # 16 Polarization: 11.12 SS G_CDS: -1.30 Total: 9.82 kcal Total: -61.60 2.15 -59.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087445630.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.101 kcal (2) G-P(sol) polarization free energy of solvation -61.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds