Wall clock time and date at job start Mon Mar 30 2020 04:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47034 * 2 1 4 4 C 1.52999 * 109.47393 * 240.00407 * 2 1 3 5 5 C 1.50696 * 109.47292 * 119.99956 * 2 1 3 6 6 N 1.31242 * 124.05558 * 357.85570 * 5 2 1 7 7 N 1.27334 * 120.04121 * 179.73013 * 6 5 2 8 8 S 1.56633 * 109.74012 * 0.02562 * 7 6 5 9 9 C 1.38246 * 124.05872 * 177.55796 * 5 2 1 10 10 C 1.47177 * 128.47468 * 0.24989 * 9 5 2 11 11 O 1.21622 * 119.99596 * 6.09979 * 10 9 5 12 12 N 1.34768 * 119.99836 * 186.10620 * 10 9 5 13 13 C 1.46500 * 120.00000 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47510 * 179.97438 * 13 12 10 15 15 H 1.08009 * 119.99970 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00337 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00054 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99992 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47096 * 89.99956 * 18 16 14 20 20 H 1.48494 * 109.47319 * 210.00317 * 18 16 14 21 21 H 1.48502 * 109.47035 * 330.00184 * 18 16 14 22 22 H 1.08997 * 109.47295 * 300.00094 * 1 2 3 23 23 H 1.09005 * 109.46823 * 59.99800 * 1 2 3 24 24 H 1.08990 * 109.47081 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47256 * 184.87783 * 3 2 1 26 26 H 1.08996 * 109.47278 * 304.88358 * 3 2 1 27 27 H 1.09004 * 109.47296 * 64.88178 * 3 2 1 28 28 H 1.09003 * 109.46545 * 294.96280 * 4 2 1 29 29 H 1.08992 * 109.47449 * 54.95775 * 4 2 1 30 30 H 1.08997 * 109.47391 * 174.96393 * 4 2 1 31 31 H 0.97008 * 120.00379 * 359.97438 * 12 10 9 32 32 H 1.09000 * 109.47301 * 299.99666 * 13 12 10 33 33 H 1.08999 * 109.46963 * 59.99335 * 13 12 10 34 34 H 0.97001 * 119.99600 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.2529 -1.2027 2.1645 7 7 1.7602 -1.7940 3.1717 8 16 3.3220 -1.7962 3.0527 9 6 3.3693 -0.9269 1.5078 10 6 4.5446 -0.5323 0.7147 11 8 4.4055 0.1608 -0.2749 12 7 5.7749 -0.9391 1.0851 13 6 6.9448 -0.5468 0.2954 14 6 8.1886 -1.1266 0.9180 15 1 8.1151 -1.7270 1.8128 16 6 9.4206 -0.8899 0.3460 17 7 10.5060 -1.3963 0.8891 18 14 9.5478 0.1491 -1.2012 19 1 9.7246 1.5751 -0.8267 20 1 10.7132 -0.2999 -2.0045 21 1 8.3066 -0.0020 -2.0024 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1264 1.4438 -0.0874 26 1 1.6070 1.9810 -0.8430 27 1 1.7498 1.9305 0.9305 28 1 1.7522 -1.7716 -1.2053 29 1 1.6049 -0.2621 -2.1369 30 1 3.1263 -0.6437 -1.2955 31 1 5.8858 -1.4917 1.8747 32 1 6.8387 -0.9223 -0.7224 33 1 7.0217 0.5403 0.2754 34 1 11.3727 -1.2300 0.4864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087445671.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:29 Heat of formation + Delta-G solvation = 30.918248 kcal Electronic energy + Delta-G solvation = -18580.765577 eV Core-core repulsion = 15641.470568 eV Total energy + Delta-G solvation = -2939.295009 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.17964 -39.15863 -36.63313 -34.57098 -32.58752 -31.31054 -28.60782 -27.76208 -27.08799 -26.34251 -23.49421 -21.91189 -21.04421 -19.77667 -17.85446 -17.61513 -16.52229 -15.94477 -15.52875 -14.97090 -14.95087 -14.45667 -13.90202 -13.74742 -13.42376 -13.00326 -12.68413 -12.50364 -12.25775 -12.05963 -11.82676 -11.27994 -11.24739 -11.14058 -10.97375 -10.86174 -10.76241 -10.13615 -10.07480 -9.79161 -9.65167 -9.64587 -9.44536 -8.89740 -8.39902 -6.31428 -4.35586 -0.22200 0.84181 1.49655 1.98755 3.18187 3.21409 3.26213 3.32417 3.50069 3.84489 4.23473 4.51183 4.89190 5.03522 5.04853 5.05062 5.25517 5.53980 5.71573 5.78357 5.91362 5.97075 6.12703 6.14564 6.24806 6.49660 6.59381 6.62169 6.88121 7.02289 7.19489 7.65417 7.88500 8.26803 8.48290 8.67412 9.26506 10.80216 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.005575 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.534511 B = 5021.143454 C = 5923.572240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.024 3.976 3 C -0.160 4.160 4 C -0.161 4.161 5 C 0.103 3.897 6 N -0.247 5.247 7 N -0.266 5.266 8 S 0.410 5.590 9 C -0.273 4.273 10 C 0.582 3.418 11 O -0.515 6.515 12 N -0.689 5.689 13 C 0.220 3.780 14 C -0.550 4.550 15 H 0.081 0.919 16 C 0.081 3.919 17 N -0.888 5.888 18 Si 0.876 3.124 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.260 1.260 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.397 0.603 32 H 0.033 0.967 33 H 0.028 0.972 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.399 1.355 0.360 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.020 3.980 3 C -0.217 4.217 4 C -0.218 4.218 5 C -0.045 4.045 6 N -0.112 5.112 7 N -0.246 5.246 8 S 0.547 5.453 9 C -0.414 4.414 10 C 0.366 3.634 11 O -0.395 6.395 12 N -0.336 5.336 13 C 0.099 3.901 14 C -0.588 4.588 15 H 0.099 0.901 16 C -0.124 4.124 17 N -0.525 5.525 18 Si 0.702 3.298 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.184 1.184 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.231 0.769 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.756 0.879 1.351 15.838 hybrid contribution 0.342 0.808 -1.404 1.655 sum -15.414 1.687 -0.053 15.506 Atomic orbital electron populations 1.21817 0.93221 1.02295 1.01856 1.19092 0.95636 0.95111 0.88134 1.22274 1.05984 0.92445 1.01008 1.22268 1.05800 0.98693 0.95022 1.22912 0.87230 0.97241 0.97088 1.70555 1.31890 1.10303 0.98471 1.78845 1.06631 1.19534 1.19554 1.82657 1.10503 1.39316 1.12845 1.28018 0.99297 1.11071 1.03051 1.16535 0.81519 0.81248 0.84146 1.90544 1.84429 1.38320 1.26243 1.46190 1.06034 1.51184 1.30207 1.19651 0.82381 0.96165 0.91897 1.21031 0.89275 1.34688 1.13763 0.90089 1.24774 0.95289 0.95136 0.97201 1.69873 0.98470 1.43954 1.40182 0.86833 0.78615 0.80954 0.83392 1.19748 1.20805 1.18404 0.92223 0.92159 0.92351 0.87809 0.91997 0.93658 0.93597 0.91896 0.88094 0.76934 0.94949 0.95408 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 7.86 37.16 0.29 -1.24 16 2 C 0.02 0.32 0.75 -155.66 -0.12 0.21 16 3 C -0.16 -2.13 8.23 37.16 0.31 -1.83 16 4 C -0.16 -2.16 8.17 37.16 0.30 -1.86 16 5 C 0.10 1.51 5.56 -82.84 -0.46 1.05 16 6 N -0.25 -3.71 10.68 33.42 0.36 -3.35 16 7 N -0.27 -3.82 12.51 60.35 0.75 -3.06 16 8 S 0.41 5.16 23.07 -107.50 -2.48 2.68 16 9 C -0.27 -4.10 6.52 -35.95 -0.23 -4.34 16 10 C 0.58 10.11 7.43 -12.64 -0.09 10.02 16 11 O -0.52 -9.71 10.01 5.26 0.05 -9.66 16 12 N -0.69 -12.73 5.54 -62.65 -0.35 -13.07 16 13 C 0.22 4.92 4.50 -5.20 -0.02 4.90 16 14 C -0.55 -14.11 9.83 -34.44 -0.34 -14.44 16 15 H 0.08 2.17 7.84 -52.48 -0.41 1.76 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.89 -25.25 13.96 55.43 0.77 -24.48 16 18 Si 0.88 20.15 27.47 -169.99 -4.67 15.48 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 22 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.10 1.63 4.58 -51.93 -0.24 1.40 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.61 4.46 -51.93 -0.23 1.37 16 31 H 0.40 6.54 7.77 -40.82 -0.32 6.23 16 32 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 33 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 293.02 15.07 4.42 4.42 Total: -1.00 -28.30 293.02 -5.70 -34.00 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -4.09 Total: 2.52 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.46 Total: -5.47 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 1.54 Total: -43.96 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.05 Total: -9.66 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -2.48 Total: 2.68 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.30 -5.70 -34.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087445671.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.916 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds