Wall clock time and date at job start Mon Mar 30 2020 04:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47034 * 2 1 4 4 C 1.52999 * 109.47393 * 240.00407 * 2 1 3 5 5 C 1.50696 * 109.47292 * 119.99956 * 2 1 3 6 6 N 1.31242 * 124.05558 * 357.85570 * 5 2 1 7 7 N 1.27334 * 120.04121 * 179.73013 * 6 5 2 8 8 S 1.56633 * 109.74012 * 0.02562 * 7 6 5 9 9 C 1.38246 * 124.05872 * 177.55796 * 5 2 1 10 10 C 1.47177 * 128.47468 * 0.24989 * 9 5 2 11 11 O 1.21622 * 119.99596 * 6.09979 * 10 9 5 12 12 N 1.34768 * 119.99836 * 186.10620 * 10 9 5 13 13 C 1.46500 * 120.00000 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47510 * 179.97438 * 13 12 10 15 15 H 1.08009 * 119.99970 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00337 * 180.02562 * 14 13 12 17 17 N 1.31520 * 120.00054 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99992 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47096 * 89.99956 * 18 16 14 20 20 H 1.48494 * 109.47319 * 210.00317 * 18 16 14 21 21 H 1.48502 * 109.47035 * 330.00184 * 18 16 14 22 22 H 1.08997 * 109.47295 * 300.00094 * 1 2 3 23 23 H 1.09005 * 109.46823 * 59.99800 * 1 2 3 24 24 H 1.08990 * 109.47081 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47256 * 184.87783 * 3 2 1 26 26 H 1.08996 * 109.47278 * 304.88358 * 3 2 1 27 27 H 1.09004 * 109.47296 * 64.88178 * 3 2 1 28 28 H 1.09003 * 109.46545 * 294.96280 * 4 2 1 29 29 H 1.08992 * 109.47449 * 54.95775 * 4 2 1 30 30 H 1.08997 * 109.47391 * 174.96393 * 4 2 1 31 31 H 0.97008 * 120.00379 * 359.97438 * 12 10 9 32 32 H 1.09000 * 109.47301 * 299.99666 * 13 12 10 33 33 H 1.08999 * 109.46963 * 59.99335 * 13 12 10 34 34 H 0.97001 * 119.99600 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.2529 -1.2027 2.1645 7 7 1.7602 -1.7940 3.1717 8 16 3.3220 -1.7962 3.0527 9 6 3.3693 -0.9269 1.5078 10 6 4.5446 -0.5323 0.7147 11 8 4.4055 0.1608 -0.2749 12 7 5.7749 -0.9391 1.0851 13 6 6.9448 -0.5468 0.2954 14 6 8.1886 -1.1266 0.9180 15 1 8.1151 -1.7270 1.8128 16 6 9.4206 -0.8899 0.3460 17 7 10.5060 -1.3963 0.8891 18 14 9.5478 0.1491 -1.2012 19 1 9.7246 1.5751 -0.8267 20 1 10.7132 -0.2999 -2.0045 21 1 8.3066 -0.0020 -2.0024 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1264 1.4438 -0.0874 26 1 1.6070 1.9810 -0.8430 27 1 1.7498 1.9305 0.9305 28 1 1.7522 -1.7716 -1.2053 29 1 1.6049 -0.2621 -2.1369 30 1 3.1263 -0.6437 -1.2955 31 1 5.8858 -1.4917 1.8747 32 1 6.8387 -0.9223 -0.7224 33 1 7.0217 0.5403 0.2754 34 1 11.3727 -1.2300 0.4864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087445671.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:29 Heat of formation + Delta-G solvation = 11.827304 kcal Electronic energy + Delta-G solvation = -18581.593423 eV Core-core repulsion = 15641.470568 eV Total energy + Delta-G solvation = -2940.122855 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.32412 -40.54628 -37.72819 -36.18282 -34.47896 -32.54087 -30.21336 -28.97883 -28.13135 -27.45975 -24.97374 -23.39359 -22.37458 -21.06421 -19.34189 -18.78636 -18.20416 -17.13387 -16.97288 -16.50118 -16.32850 -15.83301 -15.17588 -14.89332 -14.85185 -14.41344 -14.24226 -14.11808 -13.25879 -13.08424 -13.07128 -12.83260 -12.73356 -12.29593 -12.17076 -11.99166 -11.97728 -11.88367 -11.64919 -11.23135 -10.89995 -10.87726 -10.79444 -10.78642 -9.97962 -8.36806 -6.44763 -1.37665 -0.26968 0.38967 0.82891 1.37783 1.40649 1.51292 1.86966 2.09413 2.31396 2.72989 2.99380 3.40748 3.69349 3.91086 4.04581 4.18456 4.50097 4.77309 4.79709 4.81987 4.94570 5.02051 5.04494 5.07500 5.10959 5.20769 5.28274 5.36712 5.53220 5.69103 6.06723 6.48415 6.56105 6.66744 7.07316 7.24226 8.77717 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.005575 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.534511 B = 5021.143454 C = 5923.572240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.019 3.981 3 C -0.155 4.155 4 C -0.156 4.156 5 C 0.107 3.893 6 N -0.261 5.261 7 N -0.279 5.279 8 S 0.482 5.518 9 C -0.301 4.301 10 C 0.588 3.412 11 O -0.528 6.528 12 N -0.694 5.694 13 C 0.233 3.767 14 C -0.550 4.550 15 H 0.059 0.941 16 C 0.028 3.972 17 N -0.932 5.932 18 Si 0.936 3.064 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.251 1.251 22 H 0.057 0.943 23 H 0.080 0.920 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.405 0.595 32 H 0.027 0.973 33 H 0.025 0.975 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.915 1.877 -0.157 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.015 3.985 3 C -0.213 4.213 4 C -0.214 4.214 5 C -0.042 4.042 6 N -0.125 5.125 7 N -0.260 5.260 8 S 0.619 5.381 9 C -0.442 4.442 10 C 0.373 3.627 11 O -0.408 6.408 12 N -0.343 5.343 13 C 0.110 3.890 14 C -0.588 4.588 15 H 0.077 0.923 16 C -0.173 4.173 17 N -0.570 5.570 18 Si 0.759 3.241 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.175 1.175 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.240 0.760 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.308 1.397 0.849 17.385 hybrid contribution 0.777 0.583 -1.134 1.493 sum -16.531 1.980 -0.284 16.651 Atomic orbital electron populations 1.21771 0.91549 1.02462 1.02773 1.19231 0.96966 0.94813 0.87472 1.22196 1.04383 0.92779 1.01901 1.22195 1.04164 0.99075 0.95926 1.23188 0.87064 0.96575 0.97337 1.70628 1.32079 1.11068 0.98701 1.78676 1.08060 1.19540 1.19699 1.82428 1.08599 1.36776 1.10327 1.27748 0.98562 1.13193 1.04710 1.16640 0.81519 0.80556 0.84002 1.90563 1.84769 1.38614 1.26890 1.45961 1.05641 1.52146 1.30522 1.19267 0.82421 0.95598 0.91721 1.21273 0.90694 1.33818 1.12967 0.92256 1.25583 0.95044 0.96382 1.00251 1.69988 0.99146 1.45868 1.42044 0.85879 0.78872 0.79485 0.79830 1.19028 1.20439 1.17485 0.92398 0.90161 0.92550 0.90199 0.90209 0.93480 0.93472 0.90107 0.90540 0.75978 0.95543 0.95682 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 7.86 71.98 0.57 -2.06 16 2 C 0.02 0.48 0.75 -52.93 -0.04 0.44 16 3 C -0.16 -3.89 8.23 71.98 0.59 -3.30 16 4 C -0.16 -3.96 8.17 71.98 0.59 -3.37 16 5 C 0.11 2.99 5.56 42.65 0.24 3.22 16 6 N -0.26 -7.39 10.68 -48.18 -0.51 -7.90 16 7 N -0.28 -7.51 12.51 37.02 0.46 -7.05 16 8 S 0.48 11.24 23.07 -56.49 -1.30 9.94 16 9 C -0.30 -8.68 6.52 24.62 0.16 -8.52 16 10 C 0.59 19.99 7.43 86.59 0.64 20.64 16 11 O -0.53 -19.60 10.01 -4.10 -0.04 -19.64 16 12 N -0.69 -25.27 5.54 -470.38 -2.61 -27.87 16 13 C 0.23 10.28 4.50 85.63 0.38 10.66 16 14 C -0.55 -28.36 9.83 25.60 0.25 -28.11 16 15 H 0.06 3.24 7.84 -2.91 -0.02 3.22 16 16 C 0.03 1.49 5.47 84.65 0.46 1.96 16 17 N -0.93 -53.63 13.96 21.45 0.30 -53.33 16 18 Si 0.94 41.22 27.47 68.60 1.88 43.10 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 22 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 23 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 2.45 4.58 -2.39 -0.01 2.43 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 2.37 4.46 -2.39 -0.01 2.36 16 31 H 0.40 13.14 7.77 -92.70 -0.72 12.42 16 32 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 33 H 0.03 1.13 7.57 -2.39 -0.02 1.11 16 34 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -59.71 293.02 2.39 -57.32 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.36 Total: 13.88 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 3.85 Total: -8.44 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -2.36 Total: -96.16 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.04 Total: -19.64 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 1.88 Total: 43.10 kcal Atomic # 16 Polarization: 11.24 SS G_CDS: -1.30 Total: 9.94 kcal Total: -59.71 2.39 -57.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087445671.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.149 kcal (2) G-P(sol) polarization free energy of solvation -59.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds