Wall clock time and date at job start Mon Mar 30 2020 04:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46922 * 2 1 4 4 N 1.31223 * 124.07065 * 270.16795 * 3 2 1 5 5 N 1.27329 * 120.05081 * 180.38531 * 4 3 2 6 6 S 1.56634 * 109.76534 * 359.69242 * 5 4 3 7 7 C 1.38366 * 124.06643 * 90.00254 * 3 2 1 8 8 C 1.47025 * 128.48266 * 359.95733 * 7 3 2 9 9 O 1.21674 * 120.00084 * 42.61992 * 8 7 3 10 10 N 1.34780 * 120.00504 * 222.62114 * 8 7 3 11 11 C 1.36834 * 120.00701 * 172.90766 * 10 8 7 12 12 H 1.07995 * 120.00320 * 207.98212 * 11 10 8 13 13 C 1.39054 * 119.99957 * 27.97876 * 11 10 8 14 14 N 1.31365 * 119.99904 * 34.60147 * 13 11 10 15 15 Si 1.86802 * 120.00426 * 214.60494 * 13 11 10 16 16 H 1.48504 * 109.46847 * 59.99920 * 15 13 11 17 17 H 1.48498 * 109.47307 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46814 * 299.99969 * 15 13 11 19 19 C 1.46503 * 119.99540 * 352.90938 * 10 8 7 20 20 C 1.53002 * 109.46954 * 246.99340 * 19 10 8 21 21 C 1.53003 * 109.47199 * 126.99371 * 19 10 8 22 22 H 1.09004 * 109.47500 * 59.99980 * 1 2 3 23 23 H 1.09002 * 109.47404 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47122 * 299.99687 * 1 2 3 25 25 H 1.08994 * 109.46951 * 239.99852 * 2 1 3 26 26 H 1.08996 * 109.47173 * 119.99948 * 2 1 3 27 27 H 0.97000 * 120.00509 * 180.02562 * 14 13 11 28 28 H 1.09000 * 109.47050 * 6.99087 * 19 10 8 29 29 H 1.09002 * 109.47070 * 294.65060 * 20 19 10 30 30 H 1.08994 * 109.46909 * 54.65282 * 20 19 10 31 31 H 1.08998 * 109.46956 * 174.64841 * 20 19 10 32 32 H 1.09004 * 109.46742 * 185.66727 * 21 19 10 33 33 H 1.08992 * 109.46772 * 305.66186 * 21 19 10 34 34 H 1.08994 * 109.46927 * 65.66250 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2743 2.1150 -1.0870 5 7 2.7049 3.3099 -0.9978 6 16 2.8508 3.7092 0.5098 7 6 2.2907 2.1515 1.1462 8 6 2.1430 1.7361 2.5488 9 8 2.5075 0.6287 2.8969 10 7 1.6037 2.5819 3.4490 11 6 1.3322 2.1484 4.7182 12 1 0.5359 2.6060 5.2864 13 6 2.0814 1.1185 5.2763 14 7 3.3588 1.0064 4.9910 15 14 1.2716 -0.1057 6.4317 16 1 0.1731 -0.8066 5.7193 17 1 2.2785 -1.0981 6.8863 18 1 0.7193 0.6140 7.6074 19 6 1.3083 3.9655 3.0687 20 6 2.2275 4.9140 3.8409 21 6 -0.1504 4.2855 3.4015 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8815 0.2878 5.3800 28 1 1.4728 4.0912 1.9985 29 1 1.9969 4.8575 4.9047 30 1 3.2660 4.6258 3.6784 31 1 2.0744 5.9344 3.4896 32 1 -0.3988 5.2790 3.0279 33 1 -0.8005 3.5477 2.9316 34 1 -0.2910 4.2580 4.4820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087445848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:49 Heat of formation + Delta-G solvation = 50.919298 kcal Electronic energy + Delta-G solvation = -19449.499255 eV Core-core repulsion = 16511.071557 eV Total energy + Delta-G solvation = -2938.427699 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.17021 -38.65968 -35.39911 -33.83362 -32.62604 -30.43484 -29.73734 -27.05800 -26.68126 -25.05266 -23.37389 -21.71305 -20.76091 -19.37050 -17.72245 -16.88323 -16.07846 -15.36621 -14.77518 -14.42679 -14.00392 -13.77577 -13.60074 -13.44137 -13.28303 -12.43659 -12.26965 -12.01588 -11.88501 -11.73681 -11.60816 -11.38898 -11.05072 -10.91525 -10.80747 -10.73921 -10.49791 -10.46776 -10.30185 -9.51250 -9.19759 -8.96854 -8.84367 -8.34802 -7.32237 -6.46186 -3.91628 0.55192 1.54540 2.25554 2.70672 3.20317 3.29072 3.32996 4.04892 4.26458 4.53800 4.62212 4.98771 5.33071 5.34766 5.45489 5.67397 5.69258 5.72864 5.79340 5.81121 6.04107 6.24582 6.25314 6.28507 6.35555 6.36683 6.52407 6.65311 6.68400 6.84813 7.30105 7.82982 8.38102 8.61646 8.85646 9.29998 9.99400 10.57026 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.009033 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.220112 B = 3098.842111 C = 3808.136357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C 0.035 3.965 4 N -0.245 5.245 5 N -0.313 5.313 6 S 0.329 5.671 7 C -0.200 4.200 8 C 0.485 3.515 9 O -0.514 6.514 10 N -0.408 5.408 11 C -0.321 4.321 12 H 0.098 0.902 13 C 0.068 3.932 14 N -0.758 5.758 15 Si 0.908 3.092 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.277 1.277 19 C 0.110 3.890 20 C -0.148 4.148 21 C -0.152 4.152 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.272 0.728 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.123 4.311 -2.945 6.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.078 4.078 3 C -0.112 4.112 4 N -0.111 5.111 5 N -0.291 5.291 6 S 0.467 5.533 7 C -0.341 4.341 8 C 0.273 3.727 9 O -0.393 6.393 10 N -0.127 5.127 11 C -0.450 4.450 12 H 0.116 0.884 13 C -0.149 4.149 14 N -0.390 5.390 15 Si 0.734 3.266 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.202 1.202 19 C 0.004 3.996 20 C -0.206 4.206 21 C -0.210 4.210 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.157 5.239 -4.033 7.327 hybrid contribution -0.578 -1.648 1.007 2.016 sum -3.735 3.591 -3.027 6.001 Atomic orbital electron populations 1.21691 0.94515 1.01813 1.01934 1.20040 0.95955 0.87513 1.04247 1.22506 1.03306 0.99694 0.85651 1.70389 1.12618 0.99419 1.28682 1.78653 1.23087 1.10904 1.16438 1.82582 1.50604 1.18868 1.01207 1.28618 1.06974 0.96831 1.01630 1.16125 0.89336 0.86462 0.80753 1.90697 1.51571 1.21013 1.76041 1.43501 1.53470 1.06333 1.09394 1.19251 1.15954 1.19901 0.89942 0.88393 1.25032 0.93725 0.98933 0.97223 1.70039 1.05659 1.27815 1.35479 0.86330 0.79783 0.80983 0.79544 1.19745 1.21014 1.20226 1.21372 0.95583 0.84489 0.98127 1.22035 0.99872 0.97164 1.01571 1.22040 0.95735 1.00400 1.02830 0.92935 0.92024 0.92322 0.90503 0.88093 0.91733 0.91641 0.91395 0.92382 0.92887 0.92733 0.92639 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.89 37.16 0.37 -1.85 16 2 C -0.04 -0.65 6.27 -27.88 -0.17 -0.83 16 3 C 0.03 0.70 6.25 -82.81 -0.52 0.18 16 4 N -0.24 -4.98 11.54 33.44 0.39 -4.60 16 5 N -0.31 -6.19 12.51 60.35 0.75 -5.43 16 6 S 0.33 6.04 20.48 -107.50 -2.20 3.84 16 7 C -0.20 -4.28 5.89 -35.97 -0.21 -4.49 16 8 C 0.49 11.83 7.03 -12.70 -0.09 11.75 16 9 O -0.51 -14.20 12.27 5.21 0.06 -14.14 16 10 N -0.41 -9.32 2.53 -109.08 -0.28 -9.60 16 11 C -0.32 -7.75 8.47 -15.02 -0.13 -7.88 16 12 H 0.10 2.21 6.75 -52.49 -0.35 1.86 16 13 C 0.07 1.72 3.94 -17.45 -0.07 1.65 16 14 N -0.76 -20.52 11.26 55.50 0.63 -19.89 16 15 Si 0.91 19.91 29.67 -169.99 -5.04 14.87 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 19 C 0.11 2.02 2.88 -67.93 -0.20 1.83 16 20 C -0.15 -2.48 9.19 37.16 0.34 -2.13 16 21 C -0.15 -2.39 8.90 37.16 0.33 -2.06 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.10 2.00 6.79 -51.93 -0.35 1.65 16 27 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.07 1.17 3.63 -27.61 -0.10 1.07 16 29 H 0.07 1.17 7.97 -51.93 -0.41 0.76 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.06 7.00 -51.93 -0.36 0.69 16 LS Contribution 295.89 15.07 4.46 4.46 Total: -1.00 -29.04 295.89 -5.68 -34.72 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -4.10 Total: -0.41 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -0.35 Total: -3.82 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: 1.49 Total: -39.52 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.06 Total: -14.14 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.04 Total: 14.87 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -2.20 Total: 3.84 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.04 -5.68 -34.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087445848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.638 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds