Wall clock time and date at job start Mon Mar 30 2020 04:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50699 * 109.46922 * 2 1 4 4 N 1.31223 * 124.07065 * 270.16795 * 3 2 1 5 5 N 1.27329 * 120.05081 * 180.38531 * 4 3 2 6 6 S 1.56634 * 109.76534 * 359.69242 * 5 4 3 7 7 C 1.38366 * 124.06643 * 90.00254 * 3 2 1 8 8 C 1.47025 * 128.48266 * 359.95733 * 7 3 2 9 9 O 1.21674 * 120.00084 * 42.61992 * 8 7 3 10 10 N 1.34780 * 120.00504 * 222.62114 * 8 7 3 11 11 C 1.36834 * 120.00701 * 172.90766 * 10 8 7 12 12 H 1.07995 * 120.00320 * 207.98212 * 11 10 8 13 13 C 1.39054 * 119.99957 * 27.97876 * 11 10 8 14 14 N 1.31365 * 119.99904 * 34.60147 * 13 11 10 15 15 Si 1.86802 * 120.00426 * 214.60494 * 13 11 10 16 16 H 1.48504 * 109.46847 * 59.99920 * 15 13 11 17 17 H 1.48498 * 109.47307 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46814 * 299.99969 * 15 13 11 19 19 C 1.46503 * 119.99540 * 352.90938 * 10 8 7 20 20 C 1.53002 * 109.46954 * 246.99340 * 19 10 8 21 21 C 1.53003 * 109.47199 * 126.99371 * 19 10 8 22 22 H 1.09004 * 109.47500 * 59.99980 * 1 2 3 23 23 H 1.09002 * 109.47404 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47122 * 299.99687 * 1 2 3 25 25 H 1.08994 * 109.46951 * 239.99852 * 2 1 3 26 26 H 1.08996 * 109.47173 * 119.99948 * 2 1 3 27 27 H 0.97000 * 120.00509 * 180.02562 * 14 13 11 28 28 H 1.09000 * 109.47050 * 6.99087 * 19 10 8 29 29 H 1.09002 * 109.47070 * 294.65060 * 20 19 10 30 30 H 1.08994 * 109.46909 * 54.65282 * 20 19 10 31 31 H 1.08998 * 109.46956 * 174.64841 * 20 19 10 32 32 H 1.09004 * 109.46742 * 185.66727 * 21 19 10 33 33 H 1.08992 * 109.46772 * 305.66186 * 21 19 10 34 34 H 1.08994 * 109.46927 * 65.66250 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2743 2.1150 -1.0870 5 7 2.7049 3.3099 -0.9978 6 16 2.8508 3.7092 0.5098 7 6 2.2907 2.1515 1.1462 8 6 2.1430 1.7361 2.5488 9 8 2.5075 0.6287 2.8969 10 7 1.6037 2.5819 3.4490 11 6 1.3322 2.1484 4.7182 12 1 0.5359 2.6060 5.2864 13 6 2.0814 1.1185 5.2763 14 7 3.3588 1.0064 4.9910 15 14 1.2716 -0.1057 6.4317 16 1 0.1731 -0.8066 5.7193 17 1 2.2785 -1.0981 6.8863 18 1 0.7193 0.6140 7.6074 19 6 1.3083 3.9655 3.0687 20 6 2.2275 4.9140 3.8409 21 6 -0.1504 4.2855 3.4015 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8815 0.2878 5.3800 28 1 1.4728 4.0912 1.9985 29 1 1.9969 4.8575 4.9047 30 1 3.2660 4.6258 3.6784 31 1 2.0744 5.9344 3.4896 32 1 -0.3988 5.2790 3.0279 33 1 -0.8005 3.5477 2.9316 34 1 -0.2910 4.2580 4.4820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087445848.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:49 Heat of formation + Delta-G solvation = 33.006150 kcal Electronic energy + Delta-G solvation = -19450.276028 eV Core-core repulsion = 16511.071557 eV Total energy + Delta-G solvation = -2939.204471 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.81273 -40.36636 -37.08605 -35.35890 -34.37918 -32.05041 -31.31384 -28.72303 -27.98459 -26.78753 -24.84381 -23.35165 -22.28878 -21.06637 -19.28981 -18.61336 -17.73208 -17.03979 -16.51991 -16.05785 -15.62480 -15.36317 -15.07367 -14.91611 -14.84164 -13.90539 -13.78255 -13.63103 -13.46646 -13.16289 -13.08924 -12.91213 -12.58295 -12.54192 -12.31542 -12.18762 -12.00834 -11.99333 -11.91168 -11.14626 -10.94816 -10.57396 -10.45037 -10.14022 -9.17732 -8.31234 -5.81227 -1.06544 -0.08289 0.63538 1.08159 1.44250 1.53605 1.56310 2.30715 2.47561 2.84568 3.01523 3.19794 3.80324 3.87165 3.97044 4.24265 4.31130 4.35260 4.37178 4.39608 4.85773 4.87031 4.93476 4.97687 5.02719 5.06744 5.16792 5.28483 5.36522 5.47968 5.51630 6.02618 6.73863 6.82801 7.09096 7.52479 8.19967 8.73580 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.009033 C = 0.007351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.220112 B = 3098.842111 C = 3808.136357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.039 4.039 3 C 0.046 3.954 4 N -0.256 5.256 5 N -0.314 5.314 6 S 0.420 5.580 7 C -0.242 4.242 8 C 0.481 3.519 9 O -0.556 6.556 10 N -0.418 5.418 11 C -0.342 4.342 12 H 0.109 0.891 13 C 0.029 3.971 14 N -0.806 5.806 15 Si 0.958 3.042 16 H -0.282 1.282 17 H -0.293 1.293 18 H -0.256 1.256 19 C 0.102 3.898 20 C -0.143 4.143 21 C -0.146 4.146 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.100 0.900 26 H 0.076 0.924 27 H 0.264 0.736 28 H 0.069 0.931 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 5.937 -4.304 9.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.080 4.080 3 C -0.100 4.100 4 N -0.122 5.122 5 N -0.293 5.293 6 S 0.557 5.443 7 C -0.383 4.383 8 C 0.269 3.731 9 O -0.438 6.438 10 N -0.136 5.136 11 C -0.471 4.471 12 H 0.126 0.874 13 C -0.183 4.183 14 N -0.440 5.440 15 Si 0.783 3.217 16 H -0.208 1.208 17 H -0.219 1.219 18 H -0.180 1.180 19 C -0.003 4.003 20 C -0.201 4.201 21 C -0.204 4.204 22 H 0.084 0.916 23 H 0.104 0.896 24 H 0.056 0.944 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.325 6.899 -5.336 9.736 hybrid contribution -0.180 -1.991 1.139 2.300 sum -4.505 4.909 -4.198 7.875 Atomic orbital electron populations 1.21637 0.92633 1.03371 1.01467 1.20141 0.97525 0.86261 1.04115 1.22923 1.01432 1.00413 0.85268 1.70498 1.13738 0.99507 1.28433 1.78496 1.21946 1.10950 1.17871 1.82258 1.47693 1.15393 0.98979 1.28378 1.09431 0.99646 1.00868 1.16470 0.88556 0.86269 0.81800 1.90660 1.52877 1.22836 1.77425 1.43649 1.53067 1.07999 1.08929 1.19456 1.16233 1.20509 0.90910 0.87372 1.25740 0.93862 1.00268 0.98435 1.70128 1.06913 1.28560 1.38442 0.85545 0.78307 0.79152 0.78666 1.20753 1.21934 1.17992 1.21695 0.97695 0.82558 0.98376 1.22010 0.98101 0.98967 1.01037 1.22002 0.93481 1.02105 1.02788 0.91642 0.89579 0.94353 0.88199 0.90537 0.92680 0.91311 0.92286 0.94490 0.88761 0.89111 0.93553 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.89 71.98 0.71 -3.26 16 2 C -0.04 -1.37 6.27 29.85 0.19 -1.19 16 3 C 0.05 1.80 6.25 42.68 0.27 2.07 16 4 N -0.26 -9.81 11.54 -48.12 -0.56 -10.36 16 5 N -0.31 -11.49 12.51 37.02 0.46 -11.02 16 6 S 0.42 14.31 20.48 -56.49 -1.16 13.16 16 7 C -0.24 -10.21 5.89 24.61 0.15 -10.06 16 8 C 0.48 23.85 7.03 86.55 0.61 24.45 16 9 O -0.56 -31.89 12.27 -4.27 -0.05 -31.95 16 10 N -0.42 -19.21 2.53 -617.24 -1.56 -20.78 16 11 C -0.34 -16.82 8.47 84.11 0.71 -16.11 16 12 H 0.11 4.91 6.75 -2.91 -0.02 4.89 16 13 C 0.03 1.53 3.94 84.96 0.33 1.87 16 14 N -0.81 -45.65 11.26 21.68 0.24 -45.41 16 15 Si 0.96 42.05 29.67 68.60 2.04 44.09 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 19 C 0.10 3.56 2.88 44.99 0.13 3.69 16 20 C -0.14 -4.52 9.19 71.98 0.66 -3.86 16 21 C -0.15 -4.24 8.90 71.98 0.64 -3.60 16 22 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 23 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 26 H 0.08 3.09 6.79 -2.39 -0.02 3.07 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.07 2.29 3.63 -17.85 -0.06 2.23 16 29 H 0.06 1.97 7.97 -2.39 -0.02 1.95 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.92 7.00 -2.39 -0.02 1.90 16 Total: -1.00 -64.25 295.89 4.87 -59.38 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 1.06 Total: 8.89 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.40 Total: -5.99 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -1.41 Total: -87.57 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.05 Total: -31.95 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.04 Total: 44.09 kcal Atomic # 16 Polarization: 14.31 SS G_CDS: -1.16 Total: 13.16 kcal Total: -64.25 4.87 -59.38 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087445848.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.384 kcal (2) G-P(sol) polarization free energy of solvation -64.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds