Wall clock time and date at job start Mon Mar 30 2020 05:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48500 * 109.46540 * 269.99829 * 3 2 1 5 5 H 1.48496 * 109.46905 * 29.99564 * 3 2 1 6 6 H 1.48493 * 109.47107 * 149.99793 * 3 2 1 7 7 C 1.37880 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99602 * 0.27728 * 7 2 1 10 10 N 1.46910 * 109.46796 * 179.72327 * 9 7 2 11 11 C 1.46899 * 110.99885 * 170.00119 * 10 9 7 12 12 C 1.50699 * 109.47009 * 285.49157 * 11 10 9 13 13 N 1.29323 * 126.06654 * 95.00876 * 12 11 10 14 14 N 1.26100 * 117.96760 * 179.75841 * 13 12 11 15 15 C 1.30242 * 117.62329 * 0.55303 * 14 13 12 16 16 N 1.38703 * 126.16846 * 179.71377 * 15 14 13 17 17 N 1.36601 * 119.99823 * 359.97438 * 16 15 14 18 18 S 1.76484 * 126.06608 * 275.31166 * 12 11 10 19 19 C 1.46899 * 110.99889 * 293.95684 * 10 9 7 20 20 C 1.53006 * 117.49570 * 246.52344 * 19 10 9 21 21 C 1.53003 * 117.49618 * 177.90361 * 19 10 9 22 22 H 0.97004 * 119.99953 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47731 * 299.72065 * 9 7 2 24 24 H 1.08999 * 109.47317 * 59.72887 * 9 7 2 25 25 H 1.09001 * 109.47116 * 45.49036 * 11 10 9 26 26 H 1.09000 * 109.46998 * 165.49362 * 11 10 9 27 27 H 0.96992 * 120.00170 * 179.97438 * 16 15 14 28 28 H 1.00897 * 111.00585 * 56.04563 * 17 16 15 29 29 H 1.00905 * 111.00108 * 180.02562 * 17 16 15 30 30 H 1.08996 * 115.54865 * 32.23025 * 19 10 9 31 31 H 1.09001 * 117.49642 * 0.02562 * 20 19 10 32 32 H 1.08995 * 117.49795 * 145.02075 * 20 19 10 33 33 H 1.08996 * 117.49584 * 214.97748 * 21 19 10 34 34 H 1.09003 * 117.49842 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 -0.0052 10 7 2.2055 -3.6157 -0.0101 11 6 1.5210 -4.8945 0.2224 12 6 1.1356 -5.0011 1.6754 13 7 -0.0106 -4.6853 2.1842 14 7 -0.1697 -4.8408 3.4254 15 6 0.8384 -5.2993 4.1107 16 7 0.8608 -5.5318 5.4779 17 7 -0.2484 -5.2747 6.2326 18 16 2.1709 -5.5718 2.9858 19 6 2.9709 -3.6485 -1.2635 20 6 2.7424 -4.8369 -2.1998 21 6 4.0462 -4.7275 -1.4066 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5608 0.8845 24 1 0.6243 -2.5530 -0.8955 25 1 0.6247 -4.9445 -0.3958 26 1 2.1882 -5.7163 -0.0377 27 1 1.6640 -5.8768 5.8981 28 1 -1.0493 -5.7779 5.8815 29 1 -0.0827 -5.4909 7.2042 30 1 3.1675 -2.6784 -1.7198 31 1 2.0239 -5.5941 -1.8859 32 1 2.7886 -4.6486 -3.2724 33 1 4.9501 -4.4673 -1.9574 34 1 4.1854 -5.4133 -0.5708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087693260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:44 Heat of formation + Delta-G solvation = 137.410110 kcal Electronic energy + Delta-G solvation = -18211.432195 eV Core-core repulsion = 15309.047771 eV Total energy + Delta-G solvation = -2902.384425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.49825 -38.28707 -37.25965 -33.80292 -32.49178 -30.94267 -29.22984 -27.30788 -25.51030 -23.70809 -22.30920 -21.88342 -20.02820 -19.74153 -18.93783 -17.54983 -16.70882 -16.39081 -15.80160 -15.47803 -14.94398 -14.51938 -14.25949 -13.47969 -13.23624 -12.86967 -12.40482 -12.11557 -11.98305 -11.70980 -11.28738 -11.08907 -10.79455 -10.66785 -10.21009 -10.01525 -9.95021 -9.75355 -9.58566 -9.53092 -9.23116 -9.07154 -8.35791 -7.58929 -7.24533 -5.94258 -3.96429 0.83353 1.05169 1.67747 2.80571 3.15985 3.36280 3.42798 3.46898 4.32810 4.38741 4.49441 4.67249 5.06998 5.32388 5.37194 5.42639 5.49217 5.62252 5.68111 5.91848 5.97972 6.00448 6.18820 6.27642 6.48478 6.68197 7.11229 7.25189 7.39252 7.72795 7.82360 8.10149 8.17890 8.52405 9.10395 9.21772 9.66778 11.16202 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.006514 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.595442 B = 4297.492021 C = 5588.966055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.191 3.809 10 N -0.501 5.501 11 C 0.130 3.870 12 C 0.046 3.954 13 N -0.219 5.219 14 N -0.322 5.322 15 C 0.287 3.713 16 N -0.539 5.539 17 N -0.591 5.591 18 S 0.040 5.960 19 C 0.058 3.942 20 C -0.233 4.233 21 C -0.188 4.188 22 H 0.261 0.739 23 H 0.044 0.956 24 H -0.002 1.002 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.418 0.582 28 H 0.347 0.653 29 H 0.358 0.642 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.982 -15.348 6.772 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.224 5.224 11 C -0.002 4.002 12 C -0.239 4.239 13 N -0.053 5.053 14 N -0.168 5.168 15 C -0.086 4.086 16 N -0.272 5.272 17 N -0.219 5.219 18 S 0.274 5.726 19 C -0.052 4.052 20 C -0.272 4.272 21 C -0.226 4.226 22 H 0.071 0.929 23 H 0.062 0.938 24 H 0.016 0.984 25 H 0.087 0.913 26 H 0.106 0.894 27 H 0.258 0.742 28 H 0.162 0.838 29 H 0.172 0.828 30 H 0.149 0.851 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.748 -14.235 7.069 16.588 hybrid contribution 0.173 -0.300 0.053 0.350 sum 4.921 -14.535 7.122 16.917 Atomic orbital electron populations 1.69978 1.05980 1.26700 1.50435 1.24976 0.94820 0.99172 0.95497 0.86539 0.79822 0.83359 0.77951 1.20744 1.21299 1.19843 1.21111 0.93427 0.89819 1.50599 0.91844 1.19874 0.89770 0.86477 0.97199 1.61973 1.27664 1.01937 1.30845 1.20561 0.98756 0.95271 0.85620 1.29324 0.90169 1.03867 1.00589 1.70776 1.18855 1.13250 1.02416 1.71342 1.24378 1.21772 0.99287 1.26461 0.92876 0.99261 0.90031 1.41951 1.11980 1.72262 1.01041 1.59906 0.96963 1.62164 1.02833 1.85545 1.17038 1.66899 1.03146 1.22674 0.97985 0.94313 0.90275 1.23563 1.00531 1.04563 0.98575 1.23047 0.93018 1.04201 1.02325 0.92925 0.93841 0.98446 0.91332 0.89411 0.74206 0.83800 0.82795 0.85117 0.89039 0.89298 0.89073 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.40 13.29 55.43 0.74 -26.66 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.54 8.29 -34.44 -0.29 -14.83 16 8 H 0.06 1.77 7.54 -52.49 -0.40 1.38 16 9 C 0.19 5.08 4.55 -4.97 -0.02 5.05 16 10 N -0.50 -10.68 4.64 -229.51 -1.06 -11.74 16 11 C 0.13 2.36 4.25 -4.98 -0.02 2.34 16 12 C 0.05 0.88 6.63 -13.33 -0.09 0.79 16 13 N -0.22 -4.69 11.04 33.57 0.37 -4.32 16 14 N -0.32 -6.39 11.47 31.00 0.36 -6.03 16 15 C 0.29 4.54 8.63 -87.14 -0.75 3.79 16 16 N -0.54 -6.07 6.64 30.98 0.21 -5.87 16 17 N -0.59 -5.97 10.26 60.35 0.62 -5.35 16 18 S 0.04 0.59 23.54 -107.50 -2.53 -1.94 16 19 C 0.06 1.08 5.74 -67.71 -0.39 0.69 16 20 C -0.23 -3.50 9.56 -26.73 -0.26 -3.76 16 21 C -0.19 -2.77 9.91 -26.73 -0.26 -3.03 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.04 1.29 6.98 -51.93 -0.36 0.92 16 24 H 0.00 -0.07 8.12 -51.93 -0.42 -0.49 16 25 H 0.07 1.27 7.82 -51.93 -0.41 0.87 16 26 H 0.09 1.32 5.62 -51.93 -0.29 1.03 16 27 H 0.42 3.19 8.95 -185.16 -1.66 1.54 16 28 H 0.35 3.42 9.15 -181.37 -1.66 1.76 16 29 H 0.36 2.07 9.21 -181.36 -1.67 0.40 16 30 H 0.13 2.68 7.18 -51.93 -0.37 2.30 16 31 H 0.09 1.30 6.02 -51.93 -0.31 0.99 16 32 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 1.23 7.47 -51.93 -0.39 0.85 16 LS Contribution 303.41 15.07 4.57 4.57 Total: -1.00 -34.70 303.41 -11.85 -46.56 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.92 Total: 1.07 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.18 Total: -7.39 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 1.22 Total: -59.98 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -2.53 Total: -1.94 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -34.70 -11.85 -46.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087693260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.965 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds