Wall clock time and date at job start Mon Mar 30 2020 05:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48500 * 109.46540 * 269.99829 * 3 2 1 5 5 H 1.48496 * 109.46905 * 29.99564 * 3 2 1 6 6 H 1.48493 * 109.47107 * 149.99793 * 3 2 1 7 7 C 1.37880 * 119.99830 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99602 * 0.27728 * 7 2 1 10 10 N 1.46910 * 109.46796 * 179.72327 * 9 7 2 11 11 C 1.46899 * 110.99885 * 170.00119 * 10 9 7 12 12 C 1.50699 * 109.47009 * 285.49157 * 11 10 9 13 13 N 1.29323 * 126.06654 * 95.00876 * 12 11 10 14 14 N 1.26100 * 117.96760 * 179.75841 * 13 12 11 15 15 C 1.30242 * 117.62329 * 0.55303 * 14 13 12 16 16 N 1.38703 * 126.16846 * 179.71377 * 15 14 13 17 17 N 1.36601 * 119.99823 * 359.97438 * 16 15 14 18 18 S 1.76484 * 126.06608 * 275.31166 * 12 11 10 19 19 C 1.46899 * 110.99889 * 293.95684 * 10 9 7 20 20 C 1.53006 * 117.49570 * 246.52344 * 19 10 9 21 21 C 1.53003 * 117.49618 * 177.90361 * 19 10 9 22 22 H 0.97004 * 119.99953 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47731 * 299.72065 * 9 7 2 24 24 H 1.08999 * 109.47317 * 59.72887 * 9 7 2 25 25 H 1.09001 * 109.47116 * 45.49036 * 11 10 9 26 26 H 1.09000 * 109.46998 * 165.49362 * 11 10 9 27 27 H 0.96992 * 120.00170 * 179.97438 * 16 15 14 28 28 H 1.00897 * 111.00585 * 56.04563 * 17 16 15 29 29 H 1.00905 * 111.00108 * 180.02562 * 17 16 15 30 30 H 1.08996 * 115.54865 * 32.23025 * 19 10 9 31 31 H 1.09001 * 117.49642 * 0.02562 * 20 19 10 32 32 H 1.08995 * 117.49795 * 145.02075 * 20 19 10 33 33 H 1.08996 * 117.49584 * 214.97748 * 21 19 10 34 34 H 1.09003 * 117.49842 * 0.02562 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 -0.0052 10 7 2.2055 -3.6157 -0.0101 11 6 1.5210 -4.8945 0.2224 12 6 1.1356 -5.0011 1.6754 13 7 -0.0106 -4.6853 2.1842 14 7 -0.1697 -4.8408 3.4254 15 6 0.8384 -5.2993 4.1107 16 7 0.8608 -5.5318 5.4779 17 7 -0.2484 -5.2747 6.2326 18 16 2.1709 -5.5718 2.9858 19 6 2.9709 -3.6485 -1.2635 20 6 2.7424 -4.8369 -2.1998 21 6 4.0462 -4.7275 -1.4066 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5608 0.8845 24 1 0.6243 -2.5530 -0.8955 25 1 0.6247 -4.9445 -0.3958 26 1 2.1882 -5.7163 -0.0377 27 1 1.6640 -5.8768 5.8981 28 1 -1.0493 -5.7779 5.8815 29 1 -0.0827 -5.4909 7.2042 30 1 3.1675 -2.6784 -1.7198 31 1 2.0239 -5.5941 -1.8859 32 1 2.7886 -4.6486 -3.2724 33 1 4.9501 -4.4673 -1.9574 34 1 4.1854 -5.4133 -0.5708 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087693260.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:44 Heat of formation + Delta-G solvation = 110.231201 kcal Electronic energy + Delta-G solvation = -18212.610761 eV Core-core repulsion = 15309.047771 eV Total energy + Delta-G solvation = -2903.562990 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.84859 -39.73921 -38.28937 -35.50861 -34.35865 -32.36600 -30.57508 -28.94078 -27.13641 -25.11791 -24.19677 -23.09974 -21.40368 -20.92123 -20.32307 -18.77828 -18.38056 -17.93597 -17.22722 -16.92916 -16.35034 -16.12777 -15.66430 -14.93356 -14.74966 -14.38182 -13.98901 -13.76301 -13.47575 -13.21076 -12.98354 -12.68498 -12.54370 -12.22941 -12.00489 -11.69339 -11.36103 -11.24950 -11.07292 -10.90752 -10.75213 -10.56671 -10.41377 -8.90728 -8.61161 -8.16697 -6.27411 -0.39429 -0.21224 0.35838 1.39531 1.42213 1.53285 1.74852 1.86400 2.41111 2.97688 3.14351 3.18526 3.48166 3.77502 3.97811 4.06724 4.24301 4.36040 4.49628 4.56602 4.67229 4.85092 5.08541 5.11451 5.26974 5.31192 5.33616 5.36021 5.67130 6.06707 6.26627 6.33381 6.54191 6.89172 6.91570 7.41455 7.90185 8.94267 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.006514 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.595442 B = 4297.492021 C = 5588.966055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.066 0.934 9 C 0.213 3.787 10 N -0.504 5.504 11 C 0.134 3.866 12 C 0.011 3.989 13 N -0.261 5.261 14 N -0.368 5.368 15 C 0.283 3.717 16 N -0.515 5.515 17 N -0.605 5.605 18 S 0.112 5.888 19 C 0.009 3.991 20 C -0.216 4.216 21 C -0.154 4.154 22 H 0.262 0.738 23 H 0.006 0.994 24 H -0.037 1.037 25 H 0.054 0.946 26 H 0.125 0.875 27 H 0.437 0.563 28 H 0.351 0.649 29 H 0.382 0.618 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.597 -16.551 7.545 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.793 3.207 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.087 3.913 10 N -0.227 5.227 11 C 0.002 3.998 12 C -0.276 4.276 13 N -0.095 5.095 14 N -0.216 5.216 15 C -0.091 4.091 16 N -0.249 5.249 17 N -0.238 5.238 18 S 0.347 5.653 19 C -0.100 4.100 20 C -0.255 4.255 21 C -0.191 4.191 22 H 0.071 0.929 23 H 0.024 0.976 24 H -0.020 1.020 25 H 0.072 0.928 26 H 0.142 0.858 27 H 0.282 0.718 28 H 0.167 0.833 29 H 0.201 0.799 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.417 -15.488 7.899 18.902 hybrid contribution -0.616 -0.022 -0.064 0.620 sum 6.801 -15.510 7.835 18.660 Atomic orbital electron populations 1.70139 1.07880 1.27677 1.51769 1.25951 0.95663 1.03289 0.95003 0.85397 0.78486 0.78269 0.78562 1.19356 1.21196 1.18813 1.21451 0.93614 0.90934 1.49882 0.91627 1.19350 0.89800 0.88458 0.93682 1.61860 1.26295 1.01769 1.32765 1.20624 0.98735 0.94731 0.85673 1.29408 0.91145 1.05091 1.01960 1.70707 1.20914 1.14271 1.03609 1.71248 1.26407 1.24694 0.99206 1.26752 0.92824 0.97862 0.91670 1.42025 1.13172 1.70103 0.99577 1.59794 0.96831 1.62899 1.04232 1.85051 1.14385 1.65626 1.00254 1.22606 1.01560 0.95022 0.90861 1.23620 1.01066 1.01951 0.98834 1.23143 0.92968 1.00871 1.02149 0.92911 0.97590 1.01963 0.92817 0.85765 0.71843 0.83303 0.79898 0.87867 0.88073 0.87997 0.86951 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.64 13.29 21.45 0.28 -59.35 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.97 46.08 29.54 68.60 2.03 48.10 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.52 -30.58 8.29 25.60 0.21 -30.36 16 8 H 0.07 3.73 7.54 -2.91 -0.02 3.71 16 9 C 0.21 11.94 4.55 85.55 0.39 12.33 16 10 N -0.50 -21.87 4.64 -880.03 -4.08 -25.95 16 11 C 0.13 4.89 4.25 85.56 0.36 5.26 16 12 C 0.01 0.40 6.63 88.48 0.59 0.99 16 13 N -0.26 -11.63 11.04 -47.71 -0.53 -12.15 16 14 N -0.37 -14.91 11.47 -55.84 -0.64 -15.55 16 15 C 0.28 8.70 8.63 179.13 1.55 10.24 16 16 N -0.51 -10.53 6.64 -55.91 -0.37 -10.90 16 17 N -0.61 -11.17 10.26 37.02 0.38 -10.79 16 18 S 0.11 3.17 23.54 -56.49 -1.33 1.84 16 19 C 0.01 0.33 5.74 44.92 0.26 0.59 16 20 C -0.22 -6.05 9.56 30.60 0.29 -5.76 16 21 C -0.15 -4.04 9.91 30.60 0.30 -3.73 16 22 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 23 H 0.01 0.38 6.98 -2.39 -0.02 0.36 16 24 H -0.04 -2.28 8.12 -2.39 -0.02 -2.30 16 25 H 0.05 2.09 7.82 -2.39 -0.02 2.07 16 26 H 0.12 3.48 5.62 -2.39 -0.01 3.47 16 27 H 0.44 5.33 8.95 -215.51 -1.93 3.40 16 28 H 0.35 6.51 9.15 -210.56 -1.93 4.58 16 29 H 0.38 3.50 9.21 -210.55 -1.94 1.56 16 30 H 0.10 4.34 7.18 -2.39 -0.02 4.33 16 31 H 0.10 2.65 6.02 -2.39 -0.01 2.64 16 32 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.10 2.43 7.47 -2.39 -0.02 2.41 16 Total: -1.00 -79.54 303.41 -4.47 -84.01 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -4.62 Total: 10.80 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 4.41 Total: -10.06 kcal Atomic # 7 Polarization: -129.73 SS G_CDS: -4.96 Total: -134.69 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.33 Total: 1.84 kcal Total: -79.54 -4.47 -84.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087693260.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.241 kcal (2) G-P(sol) polarization free energy of solvation -79.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds