Wall clock time and date at job start Mon Mar 30 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76202 * 99.99863 * 2 1 4 4 N 1.32526 * 119.14314 * 0.02562 * 3 2 1 5 5 C 1.33084 * 120.79697 * 180.02562 * 4 3 2 6 6 N 1.38621 * 120.43299 * 179.97438 * 5 4 3 7 7 N 1.36596 * 120.00133 * 359.97438 * 6 5 4 8 8 C 1.39199 * 119.12814 * 359.97438 * 5 4 3 9 9 C 1.39173 * 118.43672 * 359.97438 * 8 5 4 10 10 N 1.38615 * 120.43884 * 180.02562 * 9 8 5 11 11 C 1.46506 * 119.99968 * 5.00461 * 10 9 8 12 12 C 1.46501 * 120.00256 * 185.00440 * 10 9 8 13 13 C 1.50706 * 109.47128 * 89.99822 * 12 10 9 14 14 H 1.07995 * 119.99763 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99861 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99932 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47369 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47254 * 120.00282 * 17 15 13 20 20 H 1.48504 * 109.46936 * 240.00101 * 17 15 13 21 21 N 1.32495 * 119.14486 * 180.02562 * 3 2 1 22 22 H 1.09008 * 109.47596 * 299.99683 * 1 2 3 23 23 H 1.09000 * 109.47630 * 60.00035 * 1 2 3 24 24 H 1.09008 * 109.47250 * 180.02562 * 1 2 3 25 25 H 0.97003 * 119.99539 * 179.97438 * 6 5 4 26 26 H 1.00903 * 111.00000 * 179.97438 * 7 6 5 27 27 H 1.00894 * 111.00367 * 303.95815 * 7 6 5 28 28 H 1.07999 * 120.78461 * 179.97438 * 8 5 4 29 29 H 1.08998 * 109.47313 * 90.00066 * 11 10 9 30 30 H 1.09004 * 109.47068 * 210.00189 * 11 10 9 31 31 H 1.08999 * 109.47053 * 329.99655 * 11 10 9 32 32 H 1.09002 * 109.47250 * 210.00040 * 12 10 9 33 33 H 1.08998 * 109.46832 * 329.99963 * 12 10 9 34 34 H 0.96991 * 119.99635 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0880 2.5718 0.0005 5 6 1.2812 3.8886 0.0000 6 7 0.2005 4.7568 0.0000 7 7 -1.0728 4.2623 0.0000 8 6 2.5826 4.3825 -0.0005 9 6 3.6364 3.4735 0.0000 10 7 4.9488 3.9198 0.0001 11 6 5.2353 5.3523 0.1102 12 6 6.0492 2.9590 -0.1100 13 6 6.3869 2.7463 -1.5633 14 1 5.8371 3.2743 -2.3282 15 6 7.3985 1.8784 -1.9161 16 7 8.0684 1.2358 -0.9843 17 14 7.8175 1.6153 -3.7173 18 1 6.9242 2.4498 -4.5604 19 1 9.2303 2.0037 -3.9588 20 1 7.6315 0.1835 -4.0647 21 7 3.3675 2.1698 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.3486 5.7154 0.0001 26 1 -1.7509 5.0096 0.0005 27 1 -1.2195 3.6410 -0.7812 28 1 2.7701 5.4461 -0.0013 29 1 5.3351 5.6231 1.1613 30 1 6.1645 5.5782 -0.4130 31 1 4.4196 5.9213 -0.3358 32 1 6.9235 3.3464 0.4132 33 1 5.7495 2.0107 0.3360 34 1 8.7798 0.6250 -1.2326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087884135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:48 Heat of formation + Delta-G solvation = 90.855513 kcal Electronic energy + Delta-G solvation = -18322.070452 eV Core-core repulsion = 15417.667269 eV Total energy + Delta-G solvation = -2904.403183 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.17554 -37.24513 -35.98657 -32.72402 -32.12422 -30.96987 -28.60408 -28.18236 -27.32309 -25.53885 -23.56694 -22.90570 -20.76494 -18.44457 -17.76181 -16.51388 -16.29378 -16.04619 -15.28797 -14.93898 -14.51274 -14.41509 -14.24267 -13.86483 -13.58247 -13.13904 -13.03138 -12.33705 -12.12331 -12.02958 -11.60413 -11.20082 -10.90671 -10.60902 -10.40940 -10.35544 -10.07627 -9.80841 -9.72042 -9.37630 -8.49057 -8.37250 -7.67188 -7.30377 -6.98682 -5.98864 -4.04666 1.66411 1.75801 2.25495 2.54526 2.98676 3.31797 3.39567 3.43291 3.83621 4.46028 4.52851 4.71235 5.33384 5.35087 5.39684 5.47616 5.48497 5.60106 5.82536 5.94431 6.05280 6.05771 6.14889 6.23348 6.67437 7.02516 7.38382 7.48391 7.67429 7.85711 7.98185 8.22751 8.27416 8.41092 8.90785 9.02207 9.59467 11.07546 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.006147 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.222864 B = 4554.260360 C = 5475.708409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.006 6.006 3 C 0.370 3.630 4 N -0.613 5.613 5 C 0.474 3.526 6 N -0.573 5.573 7 N -0.595 5.595 8 C -0.383 4.383 9 C 0.485 3.515 10 N -0.577 5.577 11 C 0.097 3.903 12 C 0.249 3.751 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.284 1.284 20 H -0.282 1.282 21 N -0.561 5.561 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.409 0.591 26 H 0.347 0.653 27 H 0.340 0.660 28 H 0.130 0.870 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.879 6.064 2.029 17.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.226 5.774 3 C -0.010 4.010 4 N -0.348 5.348 5 C 0.231 3.769 6 N -0.301 5.301 7 N -0.219 5.219 8 C -0.420 4.420 9 C 0.239 3.761 10 N -0.285 5.285 11 C -0.047 4.047 12 C 0.130 3.870 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.139 4.139 16 N -0.532 5.532 17 Si 0.723 3.277 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.208 1.208 21 N -0.291 5.291 22 H 0.106 0.894 23 H 0.103 0.897 24 H 0.114 0.886 25 H 0.248 0.752 26 H 0.160 0.840 27 H 0.154 0.846 28 H 0.148 0.852 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.845 3.718 2.755 15.550 hybrid contribution -0.533 2.846 -2.038 3.541 sum -15.378 6.563 0.717 16.735 Atomic orbital electron populations 1.23431 0.95528 1.05156 1.06832 1.85874 1.05100 0.95135 1.91304 1.24061 0.85977 0.98983 0.91993 1.68129 1.34135 1.01585 1.30919 1.17640 0.84638 0.87476 0.87172 1.42832 0.99048 1.05886 1.82351 1.59935 0.91913 1.19898 1.50192 1.20935 0.91176 1.00679 1.29217 1.18042 0.85786 0.87578 0.84721 1.47027 1.02857 1.07026 1.71540 1.21622 1.01781 0.80950 1.00345 1.19409 0.82301 0.88129 0.97168 1.21445 1.17132 1.25468 0.92157 0.92689 1.24896 0.96024 0.95441 0.97531 1.69941 1.22745 1.28180 1.32330 0.86485 0.77884 0.78162 0.85131 1.19995 1.21042 1.20778 1.68103 1.20098 1.14827 1.26041 0.89355 0.89736 0.88619 0.75228 0.83994 0.84564 0.85220 0.93688 0.90523 0.92310 0.95210 0.92818 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.61 101.05 0.97 -0.76 16 2 S -0.01 -0.11 22.89 -107.50 -2.46 -2.57 16 3 C 0.37 7.58 7.85 -90.92 -0.71 6.87 16 4 N -0.61 -11.16 8.62 -12.74 -0.11 -11.27 16 5 C 0.47 7.97 7.58 -154.78 -1.17 6.80 16 6 N -0.57 -6.95 6.62 31.18 0.21 -6.75 16 7 N -0.59 -6.10 10.07 60.35 0.61 -5.49 16 8 C -0.38 -6.82 9.18 -38.88 -0.36 -7.18 16 9 C 0.48 10.57 7.38 -154.77 -1.14 9.43 16 10 N -0.58 -12.74 2.96 -183.01 -0.54 -13.28 16 11 C 0.10 1.63 10.30 59.85 0.62 2.24 16 12 C 0.25 6.57 5.23 -5.19 -0.03 6.54 16 13 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 14 H 0.05 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 17 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 N -0.56 -13.16 9.18 -12.74 -0.12 -13.28 16 22 H 0.09 1.12 8.11 -51.91 -0.42 0.70 16 23 H 0.08 1.04 8.11 -51.92 -0.42 0.62 16 24 H 0.10 0.92 8.14 -51.91 -0.42 0.50 16 25 H 0.41 3.74 8.84 -185.15 -1.64 2.11 16 26 H 0.35 2.26 9.21 -181.36 -1.67 0.59 16 27 H 0.34 3.53 9.04 -181.37 -1.64 1.89 16 28 H 0.13 1.91 6.13 -52.49 -0.32 1.59 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 31 H 0.06 0.84 6.04 -51.93 -0.31 0.52 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.05 1.57 7.33 -51.93 -0.38 1.19 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -33.90 307.83 -12.34 -46.24 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.03 Total: 0.13 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -2.25 Total: 10.43 kcal Atomic # 7 Polarization: -76.70 SS G_CDS: 0.78 Total: -75.92 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.46 Total: -2.57 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.90 -12.34 -46.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087884135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.094 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds