Wall clock time and date at job start Mon Mar 30 2020 05:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76202 * 99.99863 * 2 1 4 4 N 1.32526 * 119.14314 * 0.02562 * 3 2 1 5 5 C 1.33084 * 120.79697 * 180.02562 * 4 3 2 6 6 N 1.38621 * 120.43299 * 179.97438 * 5 4 3 7 7 N 1.36596 * 120.00133 * 359.97438 * 6 5 4 8 8 C 1.39199 * 119.12814 * 359.97438 * 5 4 3 9 9 C 1.39173 * 118.43672 * 359.97438 * 8 5 4 10 10 N 1.38615 * 120.43884 * 180.02562 * 9 8 5 11 11 C 1.46506 * 119.99968 * 5.00461 * 10 9 8 12 12 C 1.46501 * 120.00256 * 185.00440 * 10 9 8 13 13 C 1.50706 * 109.47128 * 89.99822 * 12 10 9 14 14 H 1.07995 * 119.99763 * 0.02562 * 13 12 10 15 15 C 1.37878 * 119.99861 * 179.97438 * 13 12 10 16 16 N 1.31521 * 119.99932 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99790 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47369 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47254 * 120.00282 * 17 15 13 20 20 H 1.48504 * 109.46936 * 240.00101 * 17 15 13 21 21 N 1.32495 * 119.14486 * 180.02562 * 3 2 1 22 22 H 1.09008 * 109.47596 * 299.99683 * 1 2 3 23 23 H 1.09000 * 109.47630 * 60.00035 * 1 2 3 24 24 H 1.09008 * 109.47250 * 180.02562 * 1 2 3 25 25 H 0.97003 * 119.99539 * 179.97438 * 6 5 4 26 26 H 1.00903 * 111.00000 * 179.97438 * 7 6 5 27 27 H 1.00894 * 111.00367 * 303.95815 * 7 6 5 28 28 H 1.07999 * 120.78461 * 179.97438 * 8 5 4 29 29 H 1.08998 * 109.47313 * 90.00066 * 11 10 9 30 30 H 1.09004 * 109.47068 * 210.00189 * 11 10 9 31 31 H 1.08999 * 109.47053 * 329.99655 * 11 10 9 32 32 H 1.09002 * 109.47250 * 210.00040 * 12 10 9 33 33 H 1.08998 * 109.46832 * 329.99963 * 12 10 9 34 34 H 0.96991 * 119.99635 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0880 2.5718 0.0005 5 6 1.2812 3.8886 0.0000 6 7 0.2005 4.7568 0.0000 7 7 -1.0728 4.2623 0.0000 8 6 2.5826 4.3825 -0.0005 9 6 3.6364 3.4735 0.0000 10 7 4.9488 3.9198 0.0001 11 6 5.2353 5.3523 0.1102 12 6 6.0492 2.9590 -0.1100 13 6 6.3869 2.7463 -1.5633 14 1 5.8371 3.2743 -2.3282 15 6 7.3985 1.8784 -1.9161 16 7 8.0684 1.2358 -0.9843 17 14 7.8175 1.6153 -3.7173 18 1 6.9242 2.4498 -4.5604 19 1 9.2303 2.0037 -3.9588 20 1 7.6315 0.1835 -4.0647 21 7 3.3675 2.1698 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.3486 5.7154 0.0001 26 1 -1.7509 5.0096 0.0005 27 1 -1.2195 3.6410 -0.7812 28 1 2.7701 5.4461 -0.0013 29 1 5.3351 5.6231 1.1613 30 1 6.1645 5.5782 -0.4130 31 1 4.4196 5.9213 -0.3358 32 1 6.9235 3.3464 0.4132 33 1 5.7495 2.0107 0.3360 34 1 8.7798 0.6250 -1.2326 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087884135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:48 Heat of formation + Delta-G solvation = 67.602713 kcal Electronic energy + Delta-G solvation = -18323.078769 eV Core-core repulsion = 15417.667269 eV Total energy + Delta-G solvation = -2905.411500 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59967 -38.52801 -37.41884 -34.82958 -33.48475 -32.42914 -30.03591 -29.53067 -28.59692 -27.20324 -24.96996 -24.76229 -22.26161 -19.73889 -19.03874 -18.59537 -17.68365 -17.38974 -16.70871 -16.41727 -16.27483 -15.85094 -15.46908 -15.16674 -15.06622 -14.69178 -14.18761 -13.95529 -13.43337 -13.25686 -13.20298 -13.07668 -12.72688 -12.56149 -12.17839 -11.96417 -11.64548 -11.36413 -11.19112 -10.91148 -10.60176 -9.97749 -8.87754 -8.79659 -8.38443 -8.10397 -6.31345 0.21243 0.41450 0.80139 1.36283 1.38953 1.39852 1.49910 1.90614 2.29740 2.44577 3.05618 3.11818 3.57191 3.98546 4.18467 4.33594 4.48229 4.49543 4.52164 4.68365 4.69684 4.89381 4.97531 5.06282 5.10758 5.34845 5.66161 5.74314 5.95672 6.12140 6.39087 6.54018 6.66045 6.80132 7.25817 7.37851 7.54619 8.89237 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.018151 B = 0.006147 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.222864 B = 4554.260360 C = 5475.708409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.043 6.043 3 C 0.355 3.645 4 N -0.605 5.605 5 C 0.467 3.533 6 N -0.551 5.551 7 N -0.602 5.602 8 C -0.375 4.375 9 C 0.456 3.544 10 N -0.594 5.594 11 C 0.095 3.905 12 C 0.270 3.730 13 C -0.533 4.533 14 H 0.045 0.955 15 C 0.012 3.988 16 N -0.926 5.926 17 Si 0.963 3.037 18 H -0.272 1.272 19 H -0.270 1.270 20 H -0.280 1.280 21 N -0.615 5.615 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.129 0.871 25 H 0.426 0.574 26 H 0.371 0.629 27 H 0.343 0.657 28 H 0.162 0.838 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.173 7.429 1.178 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S 0.189 5.811 3 C -0.025 4.025 4 N -0.340 5.340 5 C 0.221 3.779 6 N -0.278 5.278 7 N -0.230 5.230 8 C -0.412 4.412 9 C 0.212 3.788 10 N -0.303 5.303 11 C -0.047 4.047 12 C 0.148 3.852 13 C -0.572 4.572 14 H 0.063 0.937 15 C -0.187 4.187 16 N -0.566 5.566 17 Si 0.788 3.212 18 H -0.197 1.197 19 H -0.195 1.195 20 H -0.206 1.206 21 N -0.346 5.346 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.147 0.853 25 H 0.269 0.731 26 H 0.188 0.812 27 H 0.158 0.842 28 H 0.179 0.821 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.033 0.967 33 H 0.031 0.969 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.217 5.167 1.912 18.077 hybrid contribution -0.046 2.438 -1.710 2.978 sum -17.263 7.605 0.202 18.865 Atomic orbital electron populations 1.23479 0.91004 1.07313 1.06915 1.85912 1.10066 0.94178 1.90990 1.24443 0.85688 1.00313 0.92016 1.68211 1.32997 1.02137 1.30630 1.17901 0.85803 0.87579 0.86602 1.42717 0.98917 1.06103 1.80090 1.59831 0.91246 1.21346 1.50551 1.21090 0.90480 1.01554 1.28117 1.18430 0.86361 0.88104 0.85900 1.46906 1.02155 1.08100 1.73155 1.21824 1.02590 0.78443 1.01831 1.18774 0.83132 0.87660 0.95591 1.21644 1.17082 1.25506 0.92947 0.93659 1.25753 0.95886 0.95063 1.02010 1.70055 1.23295 1.28770 1.34488 0.85445 0.78192 0.77934 0.79669 1.19655 1.19524 1.20580 1.68049 1.22039 1.16442 1.28095 0.89349 0.89329 0.85319 0.73144 0.81222 0.84176 0.82056 0.91782 0.91243 0.89355 0.96698 0.96872 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.61 113.37 1.09 -1.61 16 2 S -0.04 -1.51 22.89 -56.49 -1.29 -2.80 16 3 C 0.36 14.71 7.85 180.45 1.42 16.12 16 4 N -0.60 -21.30 8.62 -194.23 -1.67 -22.98 16 5 C 0.47 14.72 7.58 133.00 1.01 15.72 16 6 N -0.55 -11.44 6.62 -55.26 -0.37 -11.81 16 7 N -0.60 -10.19 10.07 37.02 0.37 -9.82 16 8 C -0.38 -12.77 9.18 22.73 0.21 -12.56 16 9 C 0.46 20.11 7.38 132.99 0.98 21.09 16 10 N -0.59 -26.78 2.96 -732.90 -2.17 -28.95 16 11 C 0.10 3.12 10.30 127.77 1.32 4.44 16 12 C 0.27 14.93 5.23 85.63 0.45 15.38 16 13 C -0.53 -31.29 9.39 25.60 0.24 -31.05 16 14 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 15 C 0.01 0.69 5.46 84.65 0.46 1.15 16 16 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 17 Si 0.96 45.86 29.54 68.60 2.03 47.89 16 18 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 N -0.61 -29.85 9.18 -194.23 -1.78 -31.63 16 22 H 0.09 2.06 8.11 -2.39 -0.02 2.04 16 23 H 0.09 1.98 8.11 -2.40 -0.02 1.96 16 24 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.43 6.03 8.84 -215.49 -1.91 4.12 16 26 H 0.37 3.35 9.21 -210.55 -1.94 1.41 16 27 H 0.34 5.99 9.04 -210.57 -1.90 4.09 16 28 H 0.16 4.23 6.13 -2.91 -0.02 4.21 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.33 8.07 -2.38 -0.02 2.31 16 31 H 0.09 2.31 6.04 -2.39 -0.01 2.29 16 32 H 0.02 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.01 0.83 7.33 -2.39 -0.02 0.81 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -76.65 307.83 -2.02 -78.67 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -4.59 Total: 9.18 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 7.17 Total: 28.69 kcal Atomic # 7 Polarization: -156.29 SS G_CDS: -5.34 Total: -161.62 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -1.29 Total: -2.80 kcal Total: -76.65 -2.02 -78.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087884135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.268 kcal (2) G-P(sol) polarization free energy of solvation -76.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds