Wall clock time and date at job start Mon Mar 30 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48504 * 109.46919 * 239.99801 * 3 2 1 5 5 H 1.48496 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47194 * 119.99864 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 N 1.46491 * 109.46957 * 179.72354 * 13 11 10 15 15 C 1.34144 * 118.70486 * 269.73056 * 14 13 11 16 16 O 1.21228 * 119.36146 * 359.46056 * 15 14 13 17 17 C 1.50603 * 121.27486 * 179.19786 * 15 14 13 18 18 C 1.53237 * 109.04865 * 29.57749 * 17 15 14 19 19 C 1.53238 * 108.56969 * 304.17116 * 18 17 15 20 20 H 1.09003 * 109.52729 * 295.71473 * 19 18 17 21 21 N 1.46903 * 109.52559 * 175.52621 * 19 18 17 22 22 C 1.34145 * 118.71020 * 90.00132 * 14 13 11 23 23 O 1.21224 * 119.35575 * 0.54088 * 22 14 13 24 24 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 26 26 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 27 27 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 28 28 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 29 29 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 30 30 H 1.09002 * 109.74588 * 269.60101 * 17 15 14 31 31 H 1.09001 * 109.45352 * 149.37720 * 17 15 14 32 32 H 1.09010 * 109.61543 * 184.44979 * 18 17 15 33 33 H 1.08992 * 109.77545 * 63.99415 * 18 17 15 34 34 H 1.00894 * 110.99966 * 180.32433 * 21 19 18 35 35 H 1.00908 * 110.99295 * 304.27005 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 7 2.0005 -7.2975 0.0110 15 6 1.6817 -7.8530 1.1897 16 8 2.0139 -7.3005 2.2164 17 6 0.9140 -9.1466 1.2622 18 6 1.2340 -9.9882 0.0223 19 6 0.9174 -9.1579 -1.2261 20 1 -0.1521 -8.9505 -1.2641 21 7 1.3167 -9.9044 -2.4266 22 6 1.6797 -7.8608 -1.1634 23 8 2.0102 -7.3151 -2.1942 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5568 0.8903 27 1 3.1566 -3.4354 0.0002 28 1 3.3607 -5.9751 -0.8833 29 1 3.3586 -5.9671 0.8967 30 1 -0.1555 -8.9388 1.2954 31 1 1.2070 -9.6928 2.1588 32 1 0.6238 -10.8915 0.0256 33 1 2.2896 -10.2598 0.0233 34 1 1.1226 -9.3747 -3.2631 35 1 2.2902 -10.1663 -2.3823 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089750862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:37 Heat of formation + Delta-G solvation = -106.935454 kcal Electronic energy + Delta-G solvation = -20751.803592 eV Core-core repulsion = 17363.777927 eV Total energy + Delta-G solvation = -3388.025665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.90555 -39.03640 -38.65561 -36.22405 -35.17911 -34.19048 -32.42768 -32.22990 -29.00082 -26.95623 -26.67227 -23.66281 -23.13971 -22.34723 -19.98554 -18.83260 -17.77566 -17.67055 -17.25315 -16.27675 -16.11590 -15.58250 -15.25289 -14.85762 -14.68508 -14.61307 -14.46782 -14.33311 -13.85241 -13.12843 -12.84229 -12.52000 -12.48239 -12.06955 -11.97970 -11.54044 -11.43657 -11.02410 -10.87133 -10.78505 -10.35558 -10.33445 -10.15482 -9.43426 -9.31522 -9.02402 -8.75328 -7.94737 -6.17238 -4.24561 1.43248 2.29498 2.71128 3.23072 3.25656 3.30020 3.31761 3.69603 3.90124 4.06714 4.22478 4.30584 4.36585 4.67611 4.79054 5.05380 5.17135 5.18800 5.19968 5.31572 5.35972 5.43986 5.54894 5.57360 6.45735 6.84477 6.91553 7.25680 7.34336 7.35593 7.49031 7.60146 7.66855 7.94813 8.54156 8.73172 9.00009 9.41614 10.93037 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036154 B = 0.004030 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.289197 B = 6946.110711 C = 7254.103676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.493 3.507 12 O -0.552 6.552 13 C 0.068 3.932 14 N -0.544 5.544 15 C 0.524 3.476 16 O -0.496 6.496 17 C -0.138 4.138 18 C -0.115 4.115 19 C 0.076 3.924 20 H 0.128 0.872 21 N -0.816 5.816 22 C 0.491 3.509 23 O -0.499 6.499 24 H 0.267 0.733 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.392 0.608 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.359 0.641 35 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.122 -21.437 -0.592 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.354 5.354 11 C 0.276 3.724 12 O -0.431 6.431 13 C -0.057 4.057 14 N -0.286 5.286 15 C 0.314 3.686 16 O -0.368 6.368 17 C -0.179 4.179 18 C -0.153 4.153 19 C -0.040 4.040 20 H 0.145 0.855 21 N -0.345 5.345 22 C 0.278 3.722 23 O -0.372 6.372 24 H 0.076 0.924 25 H 0.045 0.955 26 H 0.046 0.954 27 H 0.225 0.775 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.174 0.826 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.876 -21.420 -0.387 21.771 hybrid contribution 1.514 2.083 -0.184 2.582 sum 5.390 -19.336 -0.571 20.082 Atomic orbital electron populations 1.69968 1.06147 1.27465 1.48724 1.24955 0.94928 0.99484 0.94608 0.86446 0.79401 0.82177 0.78720 1.20025 1.21031 1.20016 1.21180 0.93275 0.90368 1.53488 0.91845 1.19130 0.88243 0.81773 0.97780 1.46370 1.11330 1.05781 1.71907 1.20430 0.89491 0.84642 0.77827 1.90647 1.16588 1.84795 1.51091 1.21668 0.95309 0.82299 1.06465 1.46214 1.52270 1.22033 1.08072 1.20978 0.78359 0.86919 0.82382 1.90758 1.50009 1.62844 1.33181 1.21927 1.02535 0.92304 1.01091 1.21771 1.03698 0.99201 0.90674 1.21792 1.01203 0.87722 0.93240 0.85459 1.59122 1.26626 1.45085 1.03697 1.22451 0.78807 0.88121 0.82791 1.90735 1.50610 1.62966 1.32848 0.92356 0.95495 0.95447 0.77521 0.86356 0.86178 0.86609 0.86498 0.87881 0.90427 0.82644 0.84276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.12 9.28 -34.44 -0.32 -15.44 16 8 H 0.06 1.63 7.60 -52.48 -0.40 1.24 16 9 C 0.25 6.89 5.43 -5.20 -0.03 6.86 16 10 N -0.71 -15.57 5.55 -61.47 -0.34 -15.91 16 11 C 0.49 10.49 7.88 -10.98 -0.09 10.40 16 12 O -0.55 -13.86 16.43 5.55 0.09 -13.77 16 13 C 0.07 1.07 5.46 -5.20 -0.03 1.04 16 14 N -0.54 -7.75 2.02 -117.07 -0.24 -7.98 16 15 C 0.52 6.95 7.47 -11.32 -0.08 6.86 16 16 O -0.50 -8.34 16.44 5.60 0.09 -8.25 16 17 C -0.14 -1.07 6.08 -27.81 -0.17 -1.24 16 18 C -0.12 -0.68 5.62 -26.49 -0.15 -0.83 16 19 C 0.08 0.66 3.48 -68.80 -0.24 0.42 16 20 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 21 N -0.82 -6.22 9.11 -5.59 -0.05 -6.27 16 22 C 0.49 6.45 7.27 -11.32 -0.08 6.37 16 23 O -0.50 -8.03 15.67 5.61 0.09 -7.94 16 24 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.39 7.32 8.32 -40.82 -0.34 6.98 16 28 H 0.12 1.66 7.28 -51.93 -0.38 1.28 16 29 H 0.12 1.69 7.27 -51.93 -0.38 1.31 16 30 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.36 3.01 8.56 -39.29 -0.34 2.67 16 35 H 0.34 2.23 8.98 -39.29 -0.35 1.88 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -36.79 306.09 -5.59 -42.38 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.28 Total: 6.63 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: -1.28 Total: 16.16 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: 0.11 Total: -55.97 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: 0.27 Total: -29.95 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -36.79 -5.59 -42.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089750862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.552 kcal (2) G-P(sol) polarization free energy of solvation -36.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds