Wall clock time and date at job start Mon Mar 30 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48504 * 109.46919 * 239.99801 * 3 2 1 5 5 H 1.48496 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47194 * 119.99864 * 3 2 1 7 7 C 1.37878 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99591 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00446 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47550 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00199 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99928 * 180.27479 * 11 10 9 14 14 N 1.46491 * 109.46957 * 179.72354 * 13 11 10 15 15 C 1.34144 * 118.70486 * 269.73056 * 14 13 11 16 16 O 1.21228 * 119.36146 * 359.46056 * 15 14 13 17 17 C 1.50603 * 121.27486 * 179.19786 * 15 14 13 18 18 C 1.53237 * 109.04865 * 29.57749 * 17 15 14 19 19 C 1.53238 * 108.56969 * 304.17116 * 18 17 15 20 20 H 1.09003 * 109.52729 * 295.71473 * 19 18 17 21 21 N 1.46903 * 109.52559 * 175.52621 * 19 18 17 22 22 C 1.34145 * 118.71020 * 90.00132 * 14 13 11 23 23 O 1.21224 * 119.35575 * 0.54088 * 22 14 13 24 24 H 0.97000 * 119.99614 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47333 * 59.99560 * 9 7 2 26 26 H 1.09002 * 109.47271 * 299.99993 * 9 7 2 27 27 H 0.97000 * 119.99484 * 359.97438 * 10 9 7 28 28 H 1.09004 * 109.46965 * 299.72211 * 13 11 10 29 29 H 1.08994 * 109.46990 * 59.72065 * 13 11 10 30 30 H 1.09002 * 109.74588 * 269.60101 * 17 15 14 31 31 H 1.09001 * 109.45352 * 149.37720 * 17 15 14 32 32 H 1.09010 * 109.61543 * 184.44979 * 18 17 15 33 33 H 1.08992 * 109.77545 * 63.99415 * 18 17 15 34 34 H 1.00894 * 110.99966 * 180.32433 * 21 19 18 35 35 H 1.00908 * 110.99295 * 304.27005 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0289 0.0063 14 7 2.0005 -7.2975 0.0110 15 6 1.6817 -7.8530 1.1897 16 8 2.0139 -7.3005 2.2164 17 6 0.9140 -9.1466 1.2622 18 6 1.2340 -9.9882 0.0223 19 6 0.9174 -9.1579 -1.2261 20 1 -0.1521 -8.9505 -1.2641 21 7 1.3167 -9.9044 -2.4266 22 6 1.6797 -7.8608 -1.1634 23 8 2.0102 -7.3151 -2.1942 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6240 -2.5568 0.8903 27 1 3.1566 -3.4354 0.0002 28 1 3.3607 -5.9751 -0.8833 29 1 3.3586 -5.9671 0.8967 30 1 -0.1555 -8.9388 1.2954 31 1 1.2070 -9.6928 2.1588 32 1 0.6238 -10.8915 0.0256 33 1 2.2896 -10.2598 0.0233 34 1 1.1226 -9.3747 -3.2631 35 1 2.2902 -10.1663 -2.3823 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089750862.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:37 Heat of formation + Delta-G solvation = -138.628732 kcal Electronic energy + Delta-G solvation = -20753.177916 eV Core-core repulsion = 17363.777927 eV Total energy + Delta-G solvation = -3389.399989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.96390 -40.42832 -40.08985 -37.03130 -36.47772 -36.06728 -34.46987 -32.99923 -30.57652 -28.56913 -27.64703 -25.03632 -24.25994 -23.74094 -21.75085 -19.74206 -19.36093 -18.74627 -18.40732 -17.96243 -17.21177 -16.87479 -16.70228 -16.36591 -16.09985 -15.82967 -15.66778 -15.28000 -15.12448 -14.62985 -14.32496 -14.07442 -13.80898 -13.28365 -13.23044 -13.01174 -12.71412 -12.64718 -12.29039 -12.03433 -11.74575 -11.61483 -11.58550 -11.28511 -10.85464 -10.66109 -10.04391 -9.99704 -8.34304 -6.52123 0.41638 1.22795 1.40286 1.44657 1.50859 1.53149 1.70277 2.28414 2.50470 2.86458 3.00422 3.28554 3.58567 3.63087 3.72312 3.98415 4.05995 4.10000 4.19850 4.27207 4.46289 4.79781 4.98479 4.99997 5.11843 5.12796 5.36243 5.56320 5.71954 5.76063 5.92779 6.29063 6.35021 6.55423 6.58653 6.71860 7.14150 7.29008 8.77989 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.036154 B = 0.004030 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.289197 B = 6946.110711 C = 7254.103676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.561 4.561 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.701 5.701 11 C 0.487 3.513 12 O -0.596 6.596 13 C 0.078 3.922 14 N -0.552 5.552 15 C 0.516 3.484 16 O -0.539 6.539 17 C -0.130 4.130 18 C -0.102 4.102 19 C 0.081 3.919 20 H 0.132 0.868 21 N -0.807 5.807 22 C 0.485 3.515 23 O -0.536 6.536 24 H 0.270 0.730 25 H -0.013 1.013 26 H -0.013 1.013 27 H 0.411 0.589 28 H 0.138 0.862 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.354 0.646 35 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 -22.873 -0.473 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.811 3.189 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.599 4.599 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.351 5.351 11 C 0.272 3.728 12 O -0.477 6.477 13 C -0.048 4.048 14 N -0.293 5.293 15 C 0.309 3.691 16 O -0.414 6.414 17 C -0.169 4.169 18 C -0.139 4.139 19 C -0.034 4.034 20 H 0.149 0.851 21 N -0.336 5.336 22 C 0.275 3.725 23 O -0.410 6.410 24 H 0.079 0.921 25 H 0.005 0.995 26 H 0.005 0.995 27 H 0.247 0.753 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.153 0.847 33 H 0.109 0.891 34 H 0.168 0.832 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.470 -22.921 -0.274 23.567 hybrid contribution 0.980 2.474 -0.244 2.672 sum 6.450 -20.447 -0.518 21.447 Atomic orbital electron populations 1.70135 1.08358 1.28795 1.49634 1.26111 0.95819 1.04034 0.93578 0.85155 0.77899 0.76280 0.79569 1.18566 1.20861 1.18565 1.21579 0.94385 0.90417 1.53473 0.89660 1.18563 0.88604 0.84213 0.94003 1.46116 1.11515 1.05267 1.72220 1.21459 0.89968 0.85437 0.75901 1.90611 1.18964 1.85511 1.52660 1.21547 0.93981 0.81099 1.08195 1.46537 1.52324 1.21232 1.09252 1.22167 0.77517 0.88196 0.81207 1.90735 1.51854 1.64442 1.34384 1.22079 1.02050 0.89551 1.03233 1.21792 1.05252 0.99071 0.87817 1.22008 1.00520 0.85817 0.95088 0.85064 1.59166 1.27275 1.43991 1.03137 1.23570 0.78026 0.89163 0.81731 1.90711 1.52128 1.64278 1.33896 0.92109 0.99546 0.99504 0.75341 0.84456 0.84326 0.85515 0.83931 0.84670 0.89110 0.83169 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.11 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.99 43.13 29.54 68.60 2.03 45.15 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.56 -31.54 9.28 25.60 0.24 -31.30 16 8 H 0.09 4.31 7.60 -2.91 -0.02 4.29 16 9 C 0.27 15.49 5.43 85.63 0.46 15.95 16 10 N -0.70 -31.87 5.55 -466.79 -2.59 -34.46 16 11 C 0.49 21.33 7.88 87.66 0.69 22.02 16 12 O -0.60 -31.27 16.43 -3.04 -0.05 -31.32 16 13 C 0.08 2.42 5.46 85.64 0.47 2.89 16 14 N -0.55 -15.39 2.02 -761.82 -1.54 -16.92 16 15 C 0.52 13.14 7.47 87.73 0.65 13.80 16 16 O -0.54 -17.98 16.44 -2.87 -0.05 -18.03 16 17 C -0.13 -1.62 6.08 29.90 0.18 -1.44 16 18 C -0.10 -0.82 5.62 30.75 0.17 -0.64 16 19 C 0.08 1.23 3.48 44.21 0.15 1.39 16 20 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 21 N -0.81 -10.50 9.11 -171.61 -1.56 -12.06 16 22 C 0.49 12.35 7.27 87.72 0.64 12.98 16 23 O -0.54 -17.17 15.67 -2.86 -0.04 -17.21 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.41 15.34 8.32 -92.71 -0.77 14.57 16 28 H 0.14 3.76 7.28 -2.38 -0.02 3.74 16 29 H 0.14 3.82 7.27 -2.39 -0.02 3.80 16 30 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.14 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.35 5.48 8.56 -89.70 -0.77 4.71 16 35 H 0.35 3.69 8.98 -89.69 -0.81 2.89 16 Total: -1.00 -84.33 306.09 -0.58 -84.91 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: -1.19 Total: 20.69 kcal Atomic # 6 Polarization: 32.23 SS G_CDS: 4.12 Total: 36.36 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -5.41 Total: -120.55 kcal Atomic # 8 Polarization: -66.42 SS G_CDS: -0.14 Total: -66.56 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -84.33 -0.58 -84.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089750862.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.714 kcal (2) G-P(sol) polarization free energy of solvation -84.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds