Wall clock time and date at job start Mon Mar 30 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 120.00102 * 2 1 4 4 H 1.48493 * 109.46817 * 269.99878 * 3 2 1 5 5 H 1.48491 * 109.46822 * 30.00220 * 3 2 1 6 6 H 1.48501 * 109.46911 * 150.00178 * 3 2 1 7 7 C 1.37874 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99785 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00534 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47629 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00222 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99945 * 180.02562 * 11 10 9 14 14 N 1.46897 * 109.47434 * 179.97438 * 13 11 10 15 15 C 1.46895 * 111.00611 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.57083 * 35.15783 * 15 14 13 17 17 C 1.53512 * 109.48276 * 155.51473 * 15 14 13 18 18 C 1.53236 * 108.43043 * 175.71754 * 17 15 14 19 19 C 1.50585 * 109.16648 * 304.24304 * 18 17 15 20 20 O 1.21220 * 119.36416 * 209.09587 * 19 18 17 21 21 N 1.34145 * 121.27687 * 29.12121 * 19 18 17 22 22 C 1.34145 * 122.58544 * 359.40565 * 21 19 18 23 23 O 1.21233 * 119.35459 * 180.56873 * 22 21 19 24 24 H 0.96993 * 119.99384 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47304 * 59.99696 * 9 7 2 26 26 H 1.08997 * 109.47533 * 299.99699 * 9 7 2 27 27 H 0.97000 * 119.99382 * 359.97438 * 10 9 7 28 28 H 1.08998 * 109.47075 * 59.99469 * 13 11 10 29 29 H 1.08998 * 109.47158 * 299.99458 * 13 11 10 30 30 H 1.00902 * 111.00077 * 56.04042 * 14 13 11 31 31 H 1.09001 * 109.79875 * 55.96511 * 17 15 14 32 32 H 1.08996 * 109.72230 * 295.42255 * 17 15 14 33 33 H 1.09001 * 109.52284 * 184.33657 * 18 17 15 34 34 H 1.09005 * 109.57596 * 64.18563 * 18 17 15 35 35 H 0.96994 * 118.70553 * 179.43376 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3250 -2.8216 -0.0009 12 8 6.1130 -1.8998 -0.0014 13 6 5.8273 -4.2424 -0.0014 14 7 7.2963 -4.2425 -0.0018 15 6 7.8228 -5.6138 -0.0017 16 1 7.1695 -6.2558 -0.5928 17 6 9.2356 -5.6199 -0.6019 18 6 9.8027 -7.0392 -0.4919 19 6 9.7570 -7.4796 0.9474 20 8 10.5805 -8.2713 1.3532 21 7 8.8225 -7.0132 1.7892 22 6 7.8880 -6.1276 1.4123 23 8 7.0772 -5.7372 2.2247 24 1 -0.4849 0.8400 -0.0004 25 1 3.8753 -0.6804 0.8889 26 1 3.8746 -0.6801 -0.8911 27 1 3.3695 -3.3125 -0.0002 28 1 5.4640 -4.7559 -0.8915 29 1 5.4639 -4.7565 0.8884 30 1 7.6582 -3.7165 0.7795 31 1 9.8732 -4.9273 -0.0524 32 1 9.1913 -5.3237 -1.6499 33 1 10.8346 -7.0474 -0.8428 34 1 9.2059 -7.7191 -1.1000 35 1 8.8227 -7.3283 2.7065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090014971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:44 Heat of formation + Delta-G solvation = -108.262223 kcal Electronic energy + Delta-G solvation = -20009.066844 eV Core-core repulsion = 16620.983645 eV Total energy + Delta-G solvation = -3388.083198 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.91797 -39.52318 -38.86819 -36.49589 -35.39334 -34.28325 -33.02676 -32.35017 -29.24918 -27.73291 -25.21083 -24.20871 -23.14832 -21.90911 -20.18436 -19.66771 -18.12316 -17.80342 -17.34569 -16.71298 -16.30560 -15.77700 -15.57809 -15.03914 -14.99483 -14.73835 -14.61503 -14.15879 -13.62403 -13.35953 -13.00339 -12.84961 -12.50487 -12.39925 -12.11168 -11.83722 -11.65307 -11.02915 -10.91937 -10.76613 -10.70038 -10.65555 -9.97804 -9.50563 -9.29687 -8.80006 -8.76337 -8.15584 -6.22036 -4.24382 1.05013 2.31389 2.34130 3.20571 3.27141 3.32872 3.41723 3.42448 3.46435 4.07240 4.16235 4.18620 4.33223 4.52927 4.61804 4.74059 5.11877 5.13241 5.21972 5.30497 5.40980 5.49519 5.54906 5.64437 6.30374 6.46401 6.80933 6.92233 6.94552 7.06715 7.21211 7.38196 7.38554 8.12426 8.50234 8.74360 8.91593 9.38074 10.89939 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.050995 B = 0.003204 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.938912 B = 8735.847597 C = 8927.048610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.080 0.920 9 C 0.222 3.778 10 N -0.705 5.705 11 C 0.502 3.498 12 O -0.548 6.548 13 C 0.030 3.970 14 N -0.638 5.638 15 C 0.069 3.931 16 H 0.126 0.874 17 C -0.112 4.112 18 C -0.142 4.142 19 C 0.525 3.475 20 O -0.507 6.507 21 N -0.674 5.674 22 C 0.489 3.511 23 O -0.493 6.493 24 H 0.268 0.732 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.397 0.603 28 H 0.102 0.898 29 H 0.076 0.924 30 H 0.360 0.640 31 H 0.082 0.918 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.962 -15.663 -1.996 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.098 0.902 9 C 0.099 3.901 10 N -0.355 5.355 11 C 0.286 3.714 12 O -0.426 6.426 13 C -0.102 4.102 14 N -0.270 5.270 15 C -0.045 4.045 16 H 0.143 0.857 17 C -0.150 4.150 18 C -0.182 4.182 19 C 0.314 3.686 20 O -0.380 6.380 21 N -0.340 5.340 22 C 0.276 3.724 23 O -0.365 6.365 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.230 0.770 28 H 0.120 0.880 29 H 0.094 0.906 30 H 0.181 0.819 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 18.364 -14.872 -2.255 23.738 hybrid contribution -0.311 0.057 1.440 1.474 sum 18.053 -14.815 -0.815 23.368 Atomic orbital electron populations 1.69881 1.06229 1.27440 1.49448 1.24802 0.94794 0.99204 0.93854 0.86804 0.80569 0.83195 0.79052 1.19818 1.20923 1.18502 1.21094 0.88537 0.95233 1.53315 0.90248 1.19485 0.95208 0.78587 0.96788 1.46142 1.05586 1.11111 1.72620 1.20264 0.83265 0.90355 0.77505 1.90657 1.55445 1.46011 1.50495 1.22038 0.88184 0.96430 1.03539 1.60469 1.07338 1.08313 1.50850 1.22072 0.99556 0.92665 0.90212 0.85664 1.21791 0.93302 0.95168 1.04767 1.21977 1.06174 0.98587 0.91485 1.21113 0.79011 0.79361 0.89147 1.90796 1.37198 1.32057 1.77934 1.45033 1.30119 1.42343 1.16525 1.22605 0.79242 0.77390 0.93190 1.90832 1.37370 1.54546 1.53705 0.92253 0.95753 0.96077 0.77003 0.88032 0.90633 0.81942 0.89966 0.87479 0.86372 0.86777 0.75148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.54 -14.87 9.83 -34.44 -0.34 -15.20 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.22 5.42 4.50 -5.20 -0.02 5.39 16 10 N -0.71 -14.00 5.55 -61.47 -0.34 -14.34 16 11 C 0.50 9.21 7.87 -10.99 -0.09 9.12 16 12 O -0.55 -12.09 16.20 5.56 0.09 -12.00 16 13 C 0.03 0.38 5.83 -4.98 -0.03 0.35 16 14 N -0.64 -7.14 5.74 -109.00 -0.63 -7.77 16 15 C 0.07 0.50 2.73 -68.66 -0.19 0.32 16 16 H 0.13 0.65 7.81 -51.93 -0.41 0.24 16 17 C -0.11 -0.54 5.71 -26.34 -0.15 -0.69 16 18 C -0.14 -0.55 6.06 -27.82 -0.17 -0.72 16 19 C 0.52 3.85 7.74 -11.32 -0.09 3.77 16 20 O -0.51 -5.53 17.87 5.61 0.10 -5.43 16 21 N -0.67 -5.13 5.09 -11.75 -0.06 -5.19 16 22 C 0.49 4.40 7.34 -11.32 -0.08 4.32 16 23 O -0.49 -6.35 15.74 5.60 0.09 -6.27 16 24 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 26 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 27 H 0.40 6.87 8.32 -40.82 -0.34 6.53 16 28 H 0.10 1.02 8.06 -51.93 -0.42 0.60 16 29 H 0.08 0.95 6.70 -51.93 -0.35 0.60 16 30 H 0.36 4.61 8.02 -39.29 -0.32 4.30 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.41 3.03 8.79 -40.82 -0.36 2.67 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -35.57 302.65 -5.56 -41.13 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.22 Total: 5.52 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -1.25 Total: 8.74 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.25 Total: -53.00 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: 0.28 Total: -23.70 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.57 -5.56 -41.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090014971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.136 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds