Wall clock time and date at job start Mon Mar 30 2020 05:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 120.00102 * 2 1 4 4 H 1.48493 * 109.46817 * 269.99878 * 3 2 1 5 5 H 1.48491 * 109.46822 * 30.00220 * 3 2 1 6 6 H 1.48501 * 109.46911 * 150.00178 * 3 2 1 7 7 C 1.37874 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99785 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00534 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47629 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00222 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99963 * 359.97438 * 11 10 9 13 13 C 1.50702 * 119.99945 * 180.02562 * 11 10 9 14 14 N 1.46897 * 109.47434 * 179.97438 * 13 11 10 15 15 C 1.46895 * 111.00611 * 179.97438 * 14 13 11 16 16 H 1.09006 * 109.57083 * 35.15783 * 15 14 13 17 17 C 1.53512 * 109.48276 * 155.51473 * 15 14 13 18 18 C 1.53236 * 108.43043 * 175.71754 * 17 15 14 19 19 C 1.50585 * 109.16648 * 304.24304 * 18 17 15 20 20 O 1.21220 * 119.36416 * 209.09587 * 19 18 17 21 21 N 1.34145 * 121.27687 * 29.12121 * 19 18 17 22 22 C 1.34145 * 122.58544 * 359.40565 * 21 19 18 23 23 O 1.21233 * 119.35459 * 180.56873 * 22 21 19 24 24 H 0.96993 * 119.99384 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47304 * 59.99696 * 9 7 2 26 26 H 1.08997 * 109.47533 * 299.99699 * 9 7 2 27 27 H 0.97000 * 119.99382 * 359.97438 * 10 9 7 28 28 H 1.08998 * 109.47075 * 59.99469 * 13 11 10 29 29 H 1.08998 * 109.47158 * 299.99458 * 13 11 10 30 30 H 1.00902 * 111.00077 * 56.04042 * 14 13 11 31 31 H 1.09001 * 109.79875 * 55.96511 * 17 15 14 32 32 H 1.08996 * 109.72230 * 295.42255 * 17 15 14 33 33 H 1.09001 * 109.52284 * 184.33657 * 18 17 15 34 34 H 1.09005 * 109.57596 * 64.18563 * 18 17 15 35 35 H 0.96994 * 118.70553 * 179.43376 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3250 -2.8216 -0.0009 12 8 6.1130 -1.8998 -0.0014 13 6 5.8273 -4.2424 -0.0014 14 7 7.2963 -4.2425 -0.0018 15 6 7.8228 -5.6138 -0.0017 16 1 7.1695 -6.2558 -0.5928 17 6 9.2356 -5.6199 -0.6019 18 6 9.8027 -7.0392 -0.4919 19 6 9.7570 -7.4796 0.9474 20 8 10.5805 -8.2713 1.3532 21 7 8.8225 -7.0132 1.7892 22 6 7.8880 -6.1276 1.4123 23 8 7.0772 -5.7372 2.2247 24 1 -0.4849 0.8400 -0.0004 25 1 3.8753 -0.6804 0.8889 26 1 3.8746 -0.6801 -0.8911 27 1 3.3695 -3.3125 -0.0002 28 1 5.4640 -4.7559 -0.8915 29 1 5.4639 -4.7565 0.8884 30 1 7.6582 -3.7165 0.7795 31 1 9.8732 -4.9273 -0.0524 32 1 9.1913 -5.3237 -1.6499 33 1 10.8346 -7.0474 -0.8428 34 1 9.2059 -7.7191 -1.1000 35 1 8.8227 -7.3283 2.7065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090014971.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:44 Heat of formation + Delta-G solvation = -140.332458 kcal Electronic energy + Delta-G solvation = -20010.457513 eV Core-core repulsion = 16620.983645 eV Total energy + Delta-G solvation = -3389.473868 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.57640 -40.60378 -40.01425 -37.26112 -36.27704 -35.96659 -34.39756 -33.64846 -30.61134 -29.03080 -26.29885 -24.73006 -24.01284 -23.55538 -21.54026 -20.48516 -19.11434 -18.80082 -18.43482 -17.75891 -17.48887 -16.99468 -16.82141 -16.25218 -15.91639 -15.75801 -15.58184 -15.29262 -14.90162 -14.64971 -14.34380 -14.05918 -13.82272 -13.34568 -13.12349 -13.07374 -12.69861 -12.63410 -12.12822 -11.93249 -11.65153 -11.62019 -11.39670 -11.29969 -10.91304 -10.79651 -9.92746 -9.64614 -8.39628 -6.46589 0.39504 1.33511 1.35706 1.48320 1.69107 1.74480 1.76238 2.28223 2.32362 2.89257 2.95895 3.10001 3.61036 3.70608 3.90843 4.03343 4.16247 4.41332 4.45857 4.51507 4.78330 4.79864 4.93144 5.04423 5.06344 5.23046 5.27156 5.53440 5.60779 5.75936 6.00972 6.10081 6.30816 6.54817 6.74307 6.87137 7.16476 7.43678 8.75163 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.050995 B = 0.003204 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.938912 B = 8735.847597 C = 8927.048610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.025 3.975 3 Si 0.939 3.061 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.233 3.767 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.586 6.586 13 C 0.045 3.955 14 N -0.645 5.645 15 C 0.071 3.929 16 H 0.157 0.843 17 C -0.103 4.103 18 C -0.130 4.130 19 C 0.526 3.474 20 O -0.545 6.545 21 N -0.672 5.672 22 C 0.496 3.504 23 O -0.538 6.538 24 H 0.272 0.728 25 H 0.009 0.991 26 H 0.014 0.986 27 H 0.409 0.591 28 H 0.138 0.862 29 H 0.079 0.921 30 H 0.347 0.653 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.420 -16.511 -3.462 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.109 3.891 10 N -0.358 5.358 11 C 0.286 3.714 12 O -0.467 6.467 13 C -0.086 4.086 14 N -0.276 5.276 15 C -0.042 4.042 16 H 0.175 0.825 17 C -0.141 4.141 18 C -0.169 4.169 19 C 0.318 3.682 20 O -0.421 6.421 21 N -0.336 5.336 22 C 0.284 3.716 23 O -0.412 6.412 24 H 0.081 0.919 25 H 0.027 0.973 26 H 0.032 0.968 27 H 0.244 0.756 28 H 0.156 0.844 29 H 0.097 0.903 30 H 0.167 0.833 31 H 0.092 0.908 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.163 0.837 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 19.836 -15.767 -3.744 25.614 hybrid contribution -0.744 0.229 1.923 2.075 sum 19.092 -15.538 -1.821 24.683 Atomic orbital electron populations 1.69984 1.07716 1.28610 1.50789 1.25618 0.95547 1.02740 0.93602 0.85839 0.79154 0.79250 0.79535 1.18742 1.19966 1.18597 1.21311 0.90041 0.94581 1.52524 0.92244 1.19067 0.93259 0.81202 0.95588 1.46009 1.06874 1.09651 1.73247 1.21249 0.82033 0.92550 0.75567 1.90634 1.56168 1.47973 1.51917 1.21975 0.89286 0.92024 1.05353 1.60525 1.06199 1.10549 1.50280 1.22344 1.01589 0.90922 0.89369 0.82536 1.21777 0.91289 0.95628 1.05428 1.22062 1.07734 0.98251 0.88892 1.21845 0.77767 0.78264 0.90304 1.90790 1.38557 1.33952 1.78787 1.45077 1.29920 1.41882 1.16741 1.22944 0.78396 0.76654 0.93574 1.90821 1.39184 1.56136 1.55059 0.91861 0.97325 0.96837 0.75572 0.84409 0.90274 0.83325 0.90808 0.85564 0.84791 0.83736 0.75449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.75 13.96 21.45 0.30 -55.45 16 2 C 0.03 1.42 5.47 84.65 0.46 1.88 16 3 Si 0.94 44.13 27.47 68.60 1.88 46.01 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 7 C -0.55 -30.15 9.83 25.60 0.25 -29.90 16 8 H 0.06 3.43 7.84 -2.91 -0.02 3.41 16 9 C 0.23 11.38 4.50 85.63 0.38 11.77 16 10 N -0.71 -27.63 5.55 -466.80 -2.59 -30.22 16 11 C 0.50 17.76 7.87 87.66 0.69 18.45 16 12 O -0.59 -25.61 16.20 -3.01 -0.05 -25.66 16 13 C 0.05 1.04 5.83 85.56 0.50 1.53 16 14 N -0.65 -12.97 5.74 -498.77 -2.86 -15.84 16 15 C 0.07 0.81 2.73 44.31 0.12 0.93 16 16 H 0.16 0.85 7.81 -2.38 -0.02 0.83 16 17 C -0.10 -0.62 5.71 30.85 0.18 -0.44 16 18 C -0.13 -0.50 6.06 29.89 0.18 -0.32 16 19 C 0.53 6.69 7.74 87.72 0.68 7.37 16 20 O -0.55 -11.28 17.87 -2.84 -0.05 -11.33 16 21 N -0.67 -9.40 5.09 -428.63 -2.18 -11.59 16 22 C 0.50 8.14 7.34 87.72 0.64 8.78 16 23 O -0.54 -13.53 15.74 -2.88 -0.05 -13.58 16 24 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.01 0.46 7.20 -2.38 -0.02 0.44 16 26 H 0.01 0.69 7.57 -2.39 -0.02 0.67 16 27 H 0.41 13.84 8.32 -92.71 -0.77 13.07 16 28 H 0.14 2.19 8.06 -2.39 -0.02 2.17 16 29 H 0.08 1.83 6.70 -2.39 -0.02 1.81 16 30 H 0.35 8.56 8.02 -89.69 -0.72 7.84 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.14 -0.20 8.14 -2.38 -0.02 -0.22 16 35 H 0.41 5.93 8.79 -92.71 -0.81 5.12 16 Total: -1.00 -78.64 302.65 -2.71 -81.35 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -1.20 Total: 16.26 kcal Atomic # 6 Polarization: 15.96 SS G_CDS: 4.09 Total: 20.05 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -7.34 Total: -113.10 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -0.14 Total: -50.57 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.88 Total: 46.01 kcal Total: -78.64 -2.71 -81.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090014971.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.985 kcal (2) G-P(sol) polarization free energy of solvation -78.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds