Wall clock time and date at job start Mon Mar 30 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46943 * 2 1 4 4 N 1.46493 * 109.47352 * 179.97438 * 3 2 1 5 5 C 1.37094 * 120.00110 * 90.00006 * 4 3 2 6 6 H 1.08001 * 120.00440 * 215.06875 * 5 4 3 7 7 C 1.38948 * 120.00151 * 35.07122 * 5 4 3 8 8 N 1.31419 * 119.99619 * 22.17997 * 7 5 4 9 9 Si 1.86798 * 120.00490 * 202.18606 * 7 5 4 10 10 H 1.48500 * 109.47386 * 89.99414 * 9 7 5 11 11 H 1.48495 * 109.47214 * 209.99957 * 9 7 5 12 12 H 1.48506 * 109.46842 * 329.99497 * 9 7 5 13 13 C 1.34777 * 119.99991 * 270.00271 * 4 3 2 14 14 O 1.21299 * 120.00256 * 5.01259 * 13 4 3 15 15 C 1.50706 * 120.00123 * 185.01209 * 13 4 3 16 16 C 1.52997 * 109.47123 * 176.55108 * 15 13 4 17 17 H 1.08995 * 110.53601 * 54.29499 * 16 15 13 18 18 N 1.47313 * 110.59896 * 291.46516 * 16 15 13 19 19 C 1.34856 * 106.44448 * 241.52466 * 18 16 15 20 20 O 1.21538 * 123.73240 * 179.97438 * 19 18 16 21 21 N 1.33794 * 112.50215 * 359.86485 * 19 18 16 22 22 C 1.34777 * 111.64067 * 0.08508 * 21 19 18 23 23 O 1.21232 * 127.15848 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.47530 * 60.00136 * 1 2 3 25 25 H 1.08993 * 109.47412 * 299.99745 * 1 2 3 26 26 H 1.09010 * 109.46867 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47530 * 119.99864 * 2 1 3 28 28 H 1.08998 * 109.47020 * 240.00512 * 2 1 3 29 29 H 1.09001 * 109.47212 * 300.00669 * 3 2 1 30 30 H 1.09010 * 109.46585 * 60.00043 * 3 2 1 31 31 H 0.96998 * 119.99559 * 175.81759 * 8 7 5 32 32 H 1.08996 * 109.46744 * 296.54999 * 15 13 4 33 33 H 1.08998 * 109.46783 * 56.54862 * 15 13 4 34 34 H 0.97012 * 126.68618 * 61.44815 * 18 16 15 35 35 H 0.96994 * 124.18210 * 180.12585 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1909 1.4425 -1.1863 6 1 5.1239 0.9052 -1.2708 7 6 3.6858 2.1338 -2.2808 8 7 2.8305 3.1151 -2.1004 9 14 4.2222 1.6681 -4.0084 10 1 3.3032 0.6353 -4.5507 11 1 4.1850 2.8703 -4.8792 12 1 5.6052 1.1283 -3.9687 13 6 4.1783 1.4428 1.1681 14 8 3.5749 1.3511 2.2164 15 6 5.6810 1.5570 1.1713 16 6 6.1847 1.6193 2.6146 17 1 5.8126 0.7692 3.1864 18 7 5.7833 2.8866 3.2494 19 6 6.9236 3.5270 3.5780 20 8 6.9549 4.6126 4.1235 21 7 8.0164 2.8334 3.2390 22 6 7.6995 1.6636 2.6494 23 8 8.4664 0.8220 2.2329 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.6765 1.9564 -0.8899 30 1 1.6765 1.9563 0.8901 31 1 2.5245 3.6371 -2.8585 32 1 6.1123 0.6887 0.6731 33 1 5.9776 2.4633 0.6434 34 1 4.8768 3.1980 3.3995 35 1 8.9244 3.1348 3.3983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091027345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:42 Heat of formation + Delta-G solvation = -89.682185 kcal Electronic energy + Delta-G solvation = -21060.475900 eV Core-core repulsion = 17673.198392 eV Total energy + Delta-G solvation = -3387.277508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.13917 -38.78424 -38.43985 -36.11277 -35.26424 -33.71370 -32.90021 -31.51943 -30.23521 -26.35702 -25.35776 -24.04980 -22.53554 -21.38910 -20.64054 -19.27680 -18.20811 -17.31231 -16.59412 -16.19895 -16.15995 -15.58592 -15.16597 -14.90324 -14.49031 -14.29280 -14.03336 -13.82106 -13.49500 -12.95766 -12.66503 -12.22704 -11.72440 -11.56937 -11.42020 -11.13710 -11.05214 -10.89123 -10.75103 -10.42734 -10.38254 -10.30572 -10.14064 -9.83092 -9.29173 -9.17500 -8.64781 -7.66581 -6.53123 -4.21643 1.69779 2.60001 3.01702 3.13952 3.14223 3.15103 3.35973 3.69315 3.97307 4.17105 4.62045 4.84656 5.05000 5.22320 5.57829 5.72861 5.76161 5.91413 6.02458 6.09524 6.15056 6.27606 6.43464 6.49036 6.60782 6.74839 6.99295 7.01904 7.12198 7.23794 7.39597 7.50154 7.76650 8.21161 8.32656 8.90889 9.32004 9.75110 10.47392 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.006138 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.123797 B = 4560.889024 C = 5283.697547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.111 3.889 4 N -0.428 5.428 5 C -0.350 4.350 6 H 0.092 0.908 7 C 0.048 3.952 8 N -0.853 5.853 9 Si 0.915 3.085 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.467 3.533 14 O -0.611 6.611 15 C -0.120 4.120 16 C 0.110 3.890 17 H 0.134 0.866 18 N -0.703 5.703 19 C 0.700 3.300 20 O -0.557 6.557 21 N -0.681 5.681 22 C 0.530 3.470 23 O -0.472 6.472 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.273 0.727 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.448 0.552 35 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 -2.952 3.630 5.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.013 4.013 4 N -0.144 5.144 5 C -0.477 4.477 6 H 0.110 0.890 7 C -0.159 4.159 8 N -0.489 5.489 9 Si 0.741 3.259 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.192 1.192 13 C 0.255 3.745 14 O -0.498 6.498 15 C -0.161 4.161 16 C 0.000 4.000 17 H 0.151 0.849 18 N -0.368 5.368 19 C 0.399 3.601 20 O -0.432 6.432 21 N -0.352 5.352 22 C 0.316 3.684 23 O -0.341 6.341 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.294 0.706 35 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.243 -2.811 4.010 5.873 hybrid contribution 0.316 0.096 -0.989 1.042 sum 3.559 -2.714 3.021 5.400 Atomic orbital electron populations 1.21658 0.96604 1.00482 1.01377 1.21804 0.94675 0.99295 1.01354 1.21534 0.81144 0.94884 1.03700 1.43446 1.04958 1.61558 1.04403 1.19470 1.08376 1.32542 0.87346 0.88998 1.25377 0.96342 0.93749 1.00438 1.69851 1.31155 1.15597 1.32269 0.86119 0.79478 0.78383 0.81886 1.20045 1.20867 1.19181 1.20007 0.88498 0.81775 0.84202 1.90528 1.70227 1.57440 1.31653 1.21591 0.96556 1.05701 0.92278 1.21873 0.90122 0.90230 0.97729 0.84911 1.45705 1.08229 1.20339 1.62509 1.16009 0.81346 0.83568 0.79148 1.91016 1.85754 1.19309 1.47077 1.44312 1.11131 1.21460 1.58305 1.20973 0.91569 0.80583 0.75280 1.90816 1.57703 1.40828 1.44786 0.93012 0.93147 0.93615 0.92884 0.92299 0.87424 0.92779 0.91690 0.87799 0.88320 0.70615 0.72991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.13 -2.55 6.26 -26.73 -0.17 -2.72 16 3 C 0.11 2.45 4.97 -4.04 -0.02 2.43 16 4 N -0.43 -9.77 2.54 -114.81 -0.29 -10.06 16 5 C -0.35 -8.14 8.61 -14.94 -0.13 -8.26 16 6 H 0.09 2.04 7.12 -52.49 -0.37 1.67 16 7 C 0.05 1.13 4.96 -17.47 -0.09 1.05 16 8 N -0.85 -21.07 11.33 55.50 0.63 -20.44 16 9 Si 0.92 18.37 29.61 -169.99 -5.03 13.34 16 10 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 11 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 13 C 0.47 9.86 7.51 -10.98 -0.08 9.77 16 14 O -0.61 -13.53 14.84 5.54 0.08 -13.45 16 15 C -0.12 -2.08 4.16 -27.88 -0.12 -2.20 16 16 C 0.11 1.62 3.15 -68.20 -0.21 1.41 16 17 H 0.13 1.88 7.91 -51.93 -0.41 1.47 16 18 N -0.70 -10.59 5.95 -59.10 -0.35 -10.94 16 19 C 0.70 10.62 9.00 -87.72 -0.79 9.83 16 20 O -0.56 -10.10 18.04 5.33 0.10 -10.00 16 21 N -0.68 -8.56 5.70 -15.71 -0.09 -8.65 16 22 C 0.53 7.37 8.14 -10.55 -0.09 7.29 16 23 O -0.47 -7.49 18.02 5.60 0.10 -7.39 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.64 8.14 -51.92 -0.42 0.21 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.11 2.56 5.37 -51.93 -0.28 2.29 16 30 H 0.05 1.23 7.50 -51.92 -0.39 0.84 16 31 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 32 H 0.10 1.71 7.70 -51.93 -0.40 1.31 16 33 H 0.10 1.77 8.08 -51.93 -0.42 1.35 16 34 H 0.45 7.01 8.43 -40.81 -0.34 6.66 16 35 H 0.43 4.26 8.96 -40.82 -0.37 3.89 16 LS Contribution 304.11 15.07 4.58 4.58 Total: -1.00 -27.99 304.11 -5.83 -33.81 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -4.23 Total: 12.51 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: -1.32 Total: 16.68 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.10 Total: -50.09 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: 0.28 Total: -30.84 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.99 -5.83 -33.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091027345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.868 kcal (2) G-P(sol) polarization free energy of solvation -27.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds