Wall clock time and date at job start Mon Mar 30 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46943 * 2 1 4 4 N 1.46493 * 109.47352 * 179.97438 * 3 2 1 5 5 C 1.37094 * 120.00110 * 90.00006 * 4 3 2 6 6 H 1.08001 * 120.00440 * 215.06875 * 5 4 3 7 7 C 1.38948 * 120.00151 * 35.07122 * 5 4 3 8 8 N 1.31419 * 119.99619 * 22.17997 * 7 5 4 9 9 Si 1.86798 * 120.00490 * 202.18606 * 7 5 4 10 10 H 1.48500 * 109.47386 * 89.99414 * 9 7 5 11 11 H 1.48495 * 109.47214 * 209.99957 * 9 7 5 12 12 H 1.48506 * 109.46842 * 329.99497 * 9 7 5 13 13 C 1.34777 * 119.99991 * 270.00271 * 4 3 2 14 14 O 1.21299 * 120.00256 * 5.01259 * 13 4 3 15 15 C 1.50706 * 120.00123 * 185.01209 * 13 4 3 16 16 C 1.52997 * 109.47123 * 176.55108 * 15 13 4 17 17 H 1.08995 * 110.53601 * 54.29499 * 16 15 13 18 18 N 1.47313 * 110.59896 * 291.46516 * 16 15 13 19 19 C 1.34856 * 106.44448 * 241.52466 * 18 16 15 20 20 O 1.21538 * 123.73240 * 179.97438 * 19 18 16 21 21 N 1.33794 * 112.50215 * 359.86485 * 19 18 16 22 22 C 1.34777 * 111.64067 * 0.08508 * 21 19 18 23 23 O 1.21232 * 127.15848 * 179.97438 * 22 21 19 24 24 H 1.08998 * 109.47530 * 60.00136 * 1 2 3 25 25 H 1.08993 * 109.47412 * 299.99745 * 1 2 3 26 26 H 1.09010 * 109.46867 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47530 * 119.99864 * 2 1 3 28 28 H 1.08998 * 109.47020 * 240.00512 * 2 1 3 29 29 H 1.09001 * 109.47212 * 300.00669 * 3 2 1 30 30 H 1.09010 * 109.46585 * 60.00043 * 3 2 1 31 31 H 0.96998 * 119.99559 * 175.81759 * 8 7 5 32 32 H 1.08996 * 109.46744 * 296.54999 * 15 13 4 33 33 H 1.08998 * 109.46783 * 56.54862 * 15 13 4 34 34 H 0.97012 * 126.68618 * 61.44815 * 18 16 15 35 35 H 0.96994 * 124.18210 * 180.12585 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1909 1.4425 -1.1863 6 1 5.1239 0.9052 -1.2708 7 6 3.6858 2.1338 -2.2808 8 7 2.8305 3.1151 -2.1004 9 14 4.2222 1.6681 -4.0084 10 1 3.3032 0.6353 -4.5507 11 1 4.1850 2.8703 -4.8792 12 1 5.6052 1.1283 -3.9687 13 6 4.1783 1.4428 1.1681 14 8 3.5749 1.3511 2.2164 15 6 5.6810 1.5570 1.1713 16 6 6.1847 1.6193 2.6146 17 1 5.8126 0.7692 3.1864 18 7 5.7833 2.8866 3.2494 19 6 6.9236 3.5270 3.5780 20 8 6.9549 4.6126 4.1235 21 7 8.0164 2.8334 3.2390 22 6 7.6995 1.6636 2.6494 23 8 8.4664 0.8220 2.2329 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.6765 1.9564 -0.8899 30 1 1.6765 1.9563 0.8901 31 1 2.5245 3.6371 -2.8585 32 1 6.1123 0.6887 0.6731 33 1 5.9776 2.4633 0.6434 34 1 4.8768 3.1980 3.3995 35 1 8.9244 3.1348 3.3983 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091027345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:42 Heat of formation + Delta-G solvation = -110.084358 kcal Electronic energy + Delta-G solvation = -21061.360605 eV Core-core repulsion = 17673.198392 eV Total energy + Delta-G solvation = -3388.162212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.36547 -40.45647 -39.70571 -37.49901 -36.87720 -34.99686 -34.46405 -33.24066 -31.62260 -27.86825 -26.99235 -25.54046 -23.74659 -22.70772 -22.11027 -20.98998 -19.45528 -18.85282 -17.94377 -17.74230 -17.48043 -16.91495 -16.59803 -16.43626 -16.09808 -15.79784 -15.43533 -15.24261 -14.93571 -14.38349 -14.24298 -13.64164 -13.30461 -13.19482 -13.00800 -12.65594 -12.57327 -12.37321 -12.19409 -12.01126 -11.95304 -11.50320 -11.48474 -11.41410 -10.99938 -10.48712 -10.35115 -9.44510 -8.30289 -6.03690 0.49313 1.42104 1.43808 1.51090 1.59254 1.92367 2.02390 2.11973 2.32057 2.84707 3.02932 3.19827 3.69786 3.96591 4.18966 4.28826 4.36886 4.48772 4.61275 4.65095 4.82700 4.89455 5.02152 5.08430 5.12792 5.25296 5.41006 5.47954 5.63587 5.74590 5.89976 6.02728 6.34737 6.42944 7.10509 7.13108 7.59189 8.01456 8.70792 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.006138 C = 0.005298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.123797 B = 4560.889024 C = 5283.697547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.111 3.889 4 N -0.445 5.445 5 C -0.358 4.358 6 H 0.101 0.899 7 C 0.009 3.991 8 N -0.886 5.886 9 Si 0.975 3.025 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.258 1.258 13 C 0.461 3.539 14 O -0.623 6.623 15 C -0.111 4.111 16 C 0.115 3.885 17 H 0.144 0.856 18 N -0.703 5.703 19 C 0.706 3.294 20 O -0.585 6.585 21 N -0.663 5.663 22 C 0.546 3.454 23 O -0.484 6.484 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.272 0.728 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.445 0.555 35 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.190 -3.925 3.370 6.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C -0.012 4.012 4 N -0.162 5.162 5 C -0.486 4.486 6 H 0.119 0.881 7 C -0.195 4.195 8 N -0.523 5.523 9 Si 0.800 3.200 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.181 1.181 13 C 0.250 3.750 14 O -0.512 6.512 15 C -0.152 4.152 16 C 0.005 3.995 17 H 0.162 0.838 18 N -0.367 5.367 19 C 0.405 3.595 20 O -0.462 6.462 21 N -0.334 5.334 22 C 0.332 3.668 23 O -0.354 6.354 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.108 0.892 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.111 0.889 34 H 0.290 0.710 35 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 4.090 -3.798 3.760 6.730 hybrid contribution 0.039 0.410 -0.840 0.935 sum 4.129 -3.389 2.920 6.087 Atomic orbital electron populations 1.21616 0.94043 1.02201 1.01625 1.21697 0.96909 0.97002 1.00571 1.21469 0.81415 0.96410 1.01942 1.43685 1.05257 1.62276 1.04972 1.19760 1.08747 1.32410 0.87648 0.88102 1.26101 0.96455 0.93472 1.03487 1.69952 1.32573 1.16697 1.33050 0.85191 0.79438 0.77686 0.77713 1.20037 1.21290 1.18143 1.20602 0.90099 0.80693 0.83559 1.90512 1.71062 1.57648 1.31953 1.21482 0.93753 1.05881 0.94045 1.21831 0.90885 0.90431 0.96332 0.83841 1.45722 1.08216 1.20454 1.62285 1.15989 0.81690 0.83136 0.78667 1.91005 1.86136 1.20623 1.48412 1.44056 1.11345 1.20590 1.57427 1.20594 0.90768 0.80510 0.74935 1.90830 1.57830 1.41303 1.45479 0.92921 0.92772 0.91134 0.93602 0.92913 0.89167 0.94349 0.91778 0.86582 0.88900 0.70993 0.71233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 9.91 71.98 0.71 -3.49 16 2 C -0.12 -4.69 6.26 30.60 0.19 -4.50 16 3 C 0.11 4.99 4.97 86.38 0.43 5.42 16 4 N -0.45 -20.35 2.54 -635.52 -1.61 -21.96 16 5 C -0.36 -16.48 8.61 84.04 0.72 -15.76 16 6 H 0.10 4.35 7.12 -2.91 -0.02 4.33 16 7 C 0.01 0.42 4.96 84.92 0.42 0.84 16 8 N -0.89 -44.18 11.33 21.66 0.25 -43.93 16 9 Si 0.98 37.09 29.61 68.60 2.03 39.13 16 10 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 11 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 12 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 13 C 0.46 19.28 7.51 87.66 0.66 19.93 16 14 O -0.62 -27.41 14.84 -3.09 -0.05 -27.46 16 15 C -0.11 -3.69 4.16 29.85 0.12 -3.57 16 16 C 0.11 3.19 3.15 44.37 0.14 3.33 16 17 H 0.14 3.78 7.91 -2.39 -0.02 3.76 16 18 N -0.70 -20.44 5.95 -459.14 -2.73 -23.18 16 19 C 0.71 20.44 9.00 179.34 1.61 22.05 16 20 O -0.58 -20.66 18.04 -3.84 -0.07 -20.72 16 21 N -0.66 -15.28 5.70 -440.85 -2.51 -17.79 16 22 C 0.55 13.98 8.14 87.94 0.72 14.70 16 23 O -0.48 -14.19 18.02 -2.88 -0.05 -14.25 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 4.39 5.37 -2.39 -0.01 4.38 16 30 H 0.04 1.79 7.50 -2.38 -0.02 1.77 16 31 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 32 H 0.12 3.61 7.70 -2.39 -0.02 3.59 16 33 H 0.09 3.24 8.08 -2.39 -0.02 3.22 16 34 H 0.44 13.72 8.43 -92.70 -0.78 12.93 16 35 H 0.44 7.78 8.96 -92.71 -0.83 6.95 16 Total: -1.00 -58.49 304.11 0.51 -57.97 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: -0.47 Total: 33.24 kcal Atomic # 6 Polarization: 33.22 SS G_CDS: 5.73 Total: 38.95 kcal Atomic # 7 Polarization: -100.25 SS G_CDS: -6.61 Total: -106.86 kcal Atomic # 8 Polarization: -62.26 SS G_CDS: -0.17 Total: -62.43 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.13 kcal Total: -58.49 0.51 -57.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091027345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.113 kcal (2) G-P(sol) polarization free energy of solvation -58.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds