Wall clock time and date at job start Mon Mar 30 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.47081 * 2 1 4 4 C 1.34238 * 116.99931 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99638 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00172 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.73920 * 59.57648 * 6 4 3 8 8 C 1.53225 * 109.60638 * 180.02562 * 6 4 3 9 9 C 1.53105 * 109.42941 * 175.92604 * 8 6 4 10 10 N 1.46875 * 109.27224 * 301.63132 * 9 8 6 11 11 C 1.34776 * 120.71362 * 237.11517 * 10 9 8 12 12 O 1.21682 * 119.99812 * 355.42274 * 11 10 9 13 13 C 1.46376 * 119.99641 * 175.42834 * 11 10 9 14 14 H 1.07998 * 120.00464 * 6.14466 * 13 11 10 15 15 C 1.40052 * 119.99608 * 186.15107 * 13 11 10 16 16 N 1.30672 * 120.00178 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99881 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46866 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47078 * 119.99718 * 17 15 13 20 20 H 1.48493 * 109.46958 * 240.00103 * 17 15 13 21 21 C 1.47198 * 118.56923 * 57.08835 * 10 9 8 22 22 C 1.51323 * 109.60458 * 299.16481 * 6 4 3 23 23 O 1.20755 * 121.02610 * 7.67539 * 22 6 4 24 24 H 1.09003 * 109.46828 * 299.99842 * 1 2 3 25 25 H 1.09000 * 109.47307 * 59.99316 * 1 2 3 26 26 H 1.08993 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46828 * 240.00158 * 2 1 3 28 28 H 1.08997 * 109.47592 * 120.00263 * 2 1 3 29 29 H 1.09002 * 109.48333 * 55.94305 * 8 6 4 30 30 H 1.09001 * 109.48850 * 295.91688 * 8 6 4 31 31 H 1.09006 * 109.50264 * 61.56563 * 9 8 6 32 32 H 1.08998 * 109.50582 * 181.68838 * 9 8 6 33 33 H 0.96996 * 119.99863 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.82667 * 191.97331 * 21 10 9 35 35 H 1.09001 * 109.87972 * 71.06776 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 1 3.5811 3.4759 0.8859 8 6 5.4512 2.8608 0.0010 9 6 6.0318 4.2737 -0.1009 10 7 5.5387 4.9132 -1.3277 11 6 6.3989 5.3826 -2.2530 12 8 7.5966 5.3545 -2.0399 13 6 5.8923 5.9261 -3.5142 14 1 4.8291 6.0431 -3.6635 15 6 6.7865 6.2944 -4.5272 16 7 8.0729 6.1532 -4.3464 17 14 6.1401 6.9875 -6.1370 18 1 4.6569 7.0464 -6.0904 19 1 6.6831 8.3545 -6.3410 20 1 6.5662 6.1130 -7.2590 21 6 4.0847 5.0298 -1.5252 22 6 3.4734 3.6725 -1.2436 23 8 2.6537 3.1924 -1.9891 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.7854 2.2682 -0.8506 30 1 5.7919 2.3936 0.9250 31 1 5.7204 4.8585 0.7647 32 1 7.1200 4.2187 -0.1313 33 1 8.6922 6.4087 -5.0479 34 1 3.8736 5.3241 -2.5533 35 1 3.6754 5.7698 -0.8375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096787543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:52 Heat of formation + Delta-G solvation = -155.883333 kcal Electronic energy + Delta-G solvation = -20927.197279 eV Core-core repulsion = 17504.756323 eV Total energy + Delta-G solvation = -3422.440956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.88012 -39.28703 -37.63393 -36.73675 -35.08121 -32.64087 -32.44209 -31.67418 -29.16007 -26.80012 -25.74482 -23.38755 -22.37932 -21.45044 -19.90220 -18.86920 -17.77476 -17.16306 -16.69695 -16.33516 -15.71531 -15.33099 -15.11467 -14.60753 -14.27247 -13.96481 -13.78351 -13.53665 -13.05570 -12.95905 -12.62603 -12.23936 -11.99196 -11.93637 -11.69912 -11.57288 -11.34834 -11.17274 -11.05739 -10.76116 -10.57412 -10.47027 -10.30758 -10.21531 -9.57175 -8.94739 -7.74385 -7.49997 -6.30768 -4.76795 1.99587 2.17793 2.60027 3.09235 3.18165 3.22226 3.98318 4.06372 4.30544 4.43352 4.51378 4.78777 4.82845 4.87943 4.97507 5.12388 5.20331 5.45480 5.54769 5.57630 5.62527 5.71059 5.81573 5.90320 5.99993 6.14319 6.32428 6.42695 6.48843 7.25087 7.36071 7.55213 7.73690 7.93799 8.16599 8.91711 9.19430 10.42037 10.61823 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.027512 B = 0.004954 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.483071 B = 5650.715959 C = 6272.590483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.347 6.347 4 C 0.478 3.522 5 O -0.504 6.504 6 C -0.134 4.134 7 H 0.139 0.861 8 C -0.111 4.111 9 C 0.115 3.885 10 N -0.639 5.639 11 C 0.559 3.441 12 O -0.568 6.568 13 C -0.545 4.545 14 H 0.075 0.925 15 C 0.088 3.912 16 N -0.765 5.765 17 Si 0.908 3.092 18 H -0.262 1.262 19 H -0.275 1.275 20 H -0.275 1.275 21 C 0.085 3.915 22 C 0.364 3.636 23 O -0.439 6.439 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.270 0.730 34 H 0.124 0.876 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.435 -6.158 9.084 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.263 6.263 4 C 0.320 3.680 5 O -0.391 6.391 6 C -0.154 4.154 7 H 0.156 0.844 8 C -0.150 4.150 9 C -0.009 4.009 10 N -0.380 5.380 11 C 0.366 3.634 12 O -0.450 6.450 13 C -0.581 4.581 14 H 0.093 0.907 15 C -0.132 4.132 16 N -0.393 5.393 17 Si 0.732 3.268 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.201 1.201 21 C -0.040 4.040 22 C 0.236 3.764 23 O -0.309 6.309 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.142 0.858 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.809 -6.731 8.701 16.139 hybrid contribution -0.384 0.045 -0.625 0.735 sum -12.193 -6.686 8.076 16.080 Atomic orbital electron populations 1.21789 0.92653 1.02752 1.03638 1.23005 0.95408 0.80402 1.02413 1.86535 1.24163 1.32101 1.83550 1.23260 0.80727 0.92005 0.72005 1.90657 1.60509 1.42752 1.45168 1.22073 0.99595 0.91047 1.02689 0.84406 1.21943 0.88611 1.00010 1.04411 1.21238 1.01611 0.90007 0.88024 1.48373 1.03630 1.64671 1.21356 1.18295 0.84784 0.77577 0.82715 1.90611 1.15149 1.60656 1.78613 1.21003 0.93983 1.44832 0.98287 0.90719 1.25724 0.94384 0.93563 0.99546 1.70001 1.02297 1.34717 1.32279 0.86304 0.80036 0.78921 0.81539 1.18571 1.20014 1.20067 1.22158 0.83736 0.92512 1.05578 1.25241 0.78532 0.89205 0.83454 1.90429 1.26920 1.67467 1.46113 0.91592 0.91238 0.90385 0.91250 0.91424 0.90181 0.89680 0.92777 0.88164 0.91915 0.85822 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.16 0.38 -0.90 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.35 -5.04 9.58 -44.34 -0.42 -5.46 16 4 C 0.48 7.52 6.83 36.01 0.25 7.76 16 5 O -0.50 -8.96 15.70 -18.75 -0.29 -9.26 16 6 C -0.13 -1.91 2.89 -92.50 -0.27 -2.18 16 7 H 0.14 1.43 8.14 -51.93 -0.42 1.01 16 8 C -0.11 -1.70 4.71 -26.56 -0.13 -1.82 16 9 C 0.12 1.98 6.32 -3.78 -0.02 1.96 16 10 N -0.64 -13.40 2.98 -175.32 -0.52 -13.92 16 11 C 0.56 15.11 7.62 -12.99 -0.10 15.01 16 12 O -0.57 -17.51 14.47 5.20 0.08 -17.44 16 13 C -0.54 -14.68 8.85 -35.63 -0.32 -15.00 16 14 H 0.07 1.83 5.72 -52.49 -0.30 1.53 16 15 C 0.09 2.38 5.50 -17.36 -0.10 2.29 16 16 N -0.76 -22.22 11.85 55.55 0.66 -21.56 16 17 Si 0.91 19.64 29.56 -169.99 -5.02 14.61 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 C 0.09 1.47 6.56 -4.42 -0.03 1.44 16 22 C 0.36 6.06 6.70 -28.34 -0.19 5.87 16 23 O -0.44 -8.36 16.47 -7.40 -0.12 -8.48 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 29 H 0.08 1.46 8.00 -51.93 -0.42 1.04 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 1.96 7.00 -51.93 -0.36 1.60 16 33 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 34 H 0.12 2.33 5.42 -51.93 -0.28 2.05 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -35.05 302.07 -5.69 -40.73 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.30 Total: 0.85 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: -0.29 Total: 15.37 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.14 Total: -35.48 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.77 Total: -40.64 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.05 -5.69 -40.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096787543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.149 kcal (2) G-P(sol) polarization free energy of solvation -35.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds