Wall clock time and date at job start Mon Mar 30 2020 05:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45200 * 109.47081 * 2 1 4 4 C 1.34238 * 116.99931 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99638 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00172 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.73920 * 59.57648 * 6 4 3 8 8 C 1.53225 * 109.60638 * 180.02562 * 6 4 3 9 9 C 1.53105 * 109.42941 * 175.92604 * 8 6 4 10 10 N 1.46875 * 109.27224 * 301.63132 * 9 8 6 11 11 C 1.34776 * 120.71362 * 237.11517 * 10 9 8 12 12 O 1.21682 * 119.99812 * 355.42274 * 11 10 9 13 13 C 1.46376 * 119.99641 * 175.42834 * 11 10 9 14 14 H 1.07998 * 120.00464 * 6.14466 * 13 11 10 15 15 C 1.40052 * 119.99608 * 186.15107 * 13 11 10 16 16 N 1.30672 * 120.00178 * 359.97438 * 15 13 11 17 17 Si 1.86805 * 119.99881 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46866 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47078 * 119.99718 * 17 15 13 20 20 H 1.48493 * 109.46958 * 240.00103 * 17 15 13 21 21 C 1.47198 * 118.56923 * 57.08835 * 10 9 8 22 22 C 1.51323 * 109.60458 * 299.16481 * 6 4 3 23 23 O 1.20755 * 121.02610 * 7.67539 * 22 6 4 24 24 H 1.09003 * 109.46828 * 299.99842 * 1 2 3 25 25 H 1.09000 * 109.47307 * 59.99316 * 1 2 3 26 26 H 1.08993 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46828 * 240.00158 * 2 1 3 28 28 H 1.08997 * 109.47592 * 120.00263 * 2 1 3 29 29 H 1.09002 * 109.48333 * 55.94305 * 8 6 4 30 30 H 1.09001 * 109.48850 * 295.91688 * 8 6 4 31 31 H 1.09006 * 109.50264 * 61.56563 * 9 8 6 32 32 H 1.08998 * 109.50582 * 181.68838 * 9 8 6 33 33 H 0.96996 * 119.99863 * 180.02562 * 16 15 13 34 34 H 1.09005 * 109.82667 * 191.97331 * 21 10 9 35 35 H 1.09001 * 109.87972 * 71.06776 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 1 3.5811 3.4759 0.8859 8 6 5.4512 2.8608 0.0010 9 6 6.0318 4.2737 -0.1009 10 7 5.5387 4.9132 -1.3277 11 6 6.3989 5.3826 -2.2530 12 8 7.5966 5.3545 -2.0399 13 6 5.8923 5.9261 -3.5142 14 1 4.8291 6.0431 -3.6635 15 6 6.7865 6.2944 -4.5272 16 7 8.0729 6.1532 -4.3464 17 14 6.1401 6.9875 -6.1370 18 1 4.6569 7.0464 -6.0904 19 1 6.6831 8.3545 -6.3410 20 1 6.5662 6.1130 -7.2590 21 6 4.0847 5.0298 -1.5252 22 6 3.4734 3.6725 -1.2436 23 8 2.6537 3.1924 -1.9891 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.7854 2.2682 -0.8506 30 1 5.7919 2.3936 0.9250 31 1 5.7204 4.8585 0.7647 32 1 7.1200 4.2187 -0.1313 33 1 8.6922 6.4087 -5.0479 34 1 3.8736 5.3241 -2.5533 35 1 3.6754 5.7698 -0.8375 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096787543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:52 Heat of formation + Delta-G solvation = -179.793572 kcal Electronic energy + Delta-G solvation = -20928.234105 eV Core-core repulsion = 17504.756323 eV Total energy + Delta-G solvation = -3423.477782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.13534 -40.66188 -39.37994 -37.94544 -36.75521 -34.66169 -33.92526 -32.59001 -30.55529 -28.67360 -27.29162 -24.44759 -23.74512 -22.66339 -21.55790 -20.30302 -19.05674 -18.72146 -18.02872 -17.78665 -17.36727 -16.78462 -16.41213 -16.11317 -16.00020 -15.36841 -14.98105 -14.77665 -14.50948 -14.39836 -13.76847 -13.61844 -13.52640 -13.15675 -12.96908 -12.90006 -12.82854 -12.73127 -12.53184 -12.30075 -12.03921 -11.95814 -11.70515 -11.56266 -11.01168 -10.94566 -9.81755 -9.20128 -8.32092 -6.86713 0.66737 0.94900 1.39263 1.40916 1.52668 1.57533 2.22177 2.42468 2.69081 2.79833 3.33855 3.56014 3.68002 3.76074 3.96730 4.04453 4.05718 4.19293 4.30211 4.45471 4.58008 4.66279 4.72882 4.80457 4.89999 4.93077 5.09006 5.15418 5.36265 5.38439 5.61283 6.06017 6.19414 6.29508 6.56250 6.86527 7.27845 8.40833 8.63407 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.027512 B = 0.004954 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.483071 B = 5650.715959 C = 6272.590483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.476 3.524 5 O -0.532 6.532 6 C -0.126 4.126 7 H 0.191 0.809 8 C -0.099 4.099 9 C 0.114 3.886 10 N -0.642 5.642 11 C 0.545 3.455 12 O -0.621 6.621 13 C -0.571 4.571 14 H 0.094 0.906 15 C 0.032 3.968 16 N -0.819 5.819 17 Si 0.990 3.010 18 H -0.246 1.246 19 H -0.266 1.266 20 H -0.273 1.273 21 C 0.083 3.917 22 C 0.369 3.631 23 O -0.466 6.466 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.079 0.921 29 H 0.041 0.959 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.275 0.725 34 H 0.105 0.895 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.983 -5.829 10.064 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.022 4.022 3 O -0.267 6.267 4 C 0.320 3.680 5 O -0.421 6.421 6 C -0.145 4.145 7 H 0.208 0.792 8 C -0.137 4.137 9 C -0.008 4.008 10 N -0.381 5.381 11 C 0.352 3.648 12 O -0.507 6.507 13 C -0.607 4.607 14 H 0.112 0.888 15 C -0.184 4.184 16 N -0.449 5.449 17 Si 0.810 3.190 18 H -0.169 1.169 19 H -0.191 1.191 20 H -0.198 1.198 21 C -0.040 4.040 22 C 0.243 3.757 23 O -0.339 6.339 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.423 -6.414 9.725 18.540 hybrid contribution 0.350 -0.133 -0.842 0.922 sum -14.073 -6.547 8.883 17.883 Atomic orbital electron populations 1.21812 0.90166 1.04447 1.03682 1.23333 0.97375 0.79095 1.02403 1.86532 1.23329 1.33848 1.83017 1.23466 0.81076 0.92140 0.71307 1.90652 1.61168 1.43713 1.46575 1.22088 0.98331 0.90697 1.03368 0.79193 1.21778 0.89490 0.98174 1.04303 1.21434 0.99996 0.91549 0.87851 1.48094 1.04772 1.63800 1.21446 1.18556 0.84743 0.77628 0.83913 1.90565 1.17474 1.62688 1.79979 1.21558 0.95207 1.45073 0.98886 0.88794 1.26910 0.94367 0.93351 1.03750 1.70160 1.04172 1.36463 1.34073 0.85076 0.80027 0.78141 0.75801 1.16909 1.19056 1.19807 1.22325 0.81487 0.94296 1.05937 1.25316 0.77746 0.88717 0.83876 1.90432 1.28479 1.67744 1.47199 0.90572 0.92086 0.87883 0.92484 0.90305 0.94025 0.86629 0.88130 0.91298 0.91517 0.87700 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 10.29 71.98 0.74 -1.37 16 2 C 0.05 1.10 6.19 71.98 0.45 1.54 16 3 O -0.35 -9.49 9.58 -46.66 -0.45 -9.94 16 4 C 0.48 14.11 6.83 71.24 0.49 14.59 16 5 O -0.53 -18.43 15.70 21.96 0.34 -18.08 16 6 C -0.13 -3.21 2.89 -12.01 -0.03 -3.24 16 7 H 0.19 2.89 8.14 -2.39 -0.02 2.87 16 8 C -0.10 -2.86 4.71 30.70 0.14 -2.72 16 9 C 0.11 3.78 6.32 86.34 0.55 4.33 16 10 N -0.64 -26.54 2.98 -826.80 -2.46 -29.00 16 11 C 0.55 30.16 7.62 86.36 0.66 30.81 16 12 O -0.62 -39.91 14.47 -4.29 -0.06 -39.98 16 13 C -0.57 -31.19 8.85 24.83 0.22 -30.97 16 14 H 0.09 4.58 5.72 -2.91 -0.02 4.56 16 15 C 0.03 1.74 5.50 85.31 0.47 2.21 16 16 N -0.82 -49.23 11.85 21.84 0.26 -48.97 16 17 Si 0.99 40.43 29.56 68.60 2.03 42.46 16 18 H -0.25 -9.30 7.11 99.48 0.71 -8.60 16 19 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 C 0.08 2.71 6.56 85.75 0.56 3.27 16 22 C 0.37 11.56 6.70 29.55 0.20 11.76 16 23 O -0.47 -17.21 16.47 11.38 0.19 -17.02 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 28 H 0.08 1.50 8.13 -2.39 -0.02 1.49 16 29 H 0.04 1.53 8.00 -2.39 -0.02 1.51 16 30 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.07 2.75 7.00 -2.39 -0.02 2.73 16 33 H 0.27 14.97 8.29 -92.71 -0.77 14.20 16 34 H 0.10 3.84 5.42 -2.38 -0.01 3.83 16 35 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -80.65 302.07 5.40 -75.25 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 1.11 Total: 15.06 kcal Atomic # 6 Polarization: 25.79 SS G_CDS: 4.44 Total: 30.22 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -2.20 Total: -77.97 kcal Atomic # 8 Polarization: -85.05 SS G_CDS: 0.02 Total: -85.03 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -80.65 5.40 -75.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096787543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.539 kcal (2) G-P(sol) polarization free energy of solvation -80.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds