Wall clock time and date at job start Mon Mar 30 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.50885 * 2 1 4 4 N 1.47074 * 109.53476 * 120.13691 * 2 1 3 5 5 C 1.47078 * 110.35947 * 176.91590 * 4 2 1 6 6 C 1.50656 * 109.24517 * 303.04020 * 5 4 2 7 7 O 1.21228 * 119.67074 * 208.85756 * 6 5 4 8 8 N 1.34448 * 120.65530 * 28.83559 * 6 5 4 9 9 C 1.46496 * 119.31779 * 179.52294 * 8 6 5 10 10 C 1.50696 * 109.46939 * 90.00249 * 9 8 6 11 11 O 1.21280 * 120.00215 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00197 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00289 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47338 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99803 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99476 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00240 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46562 * 90.00464 * 18 16 14 20 20 H 1.48498 * 109.46938 * 210.00106 * 18 16 14 21 21 H 1.48496 * 109.47424 * 330.00443 * 18 16 14 22 22 C 1.34451 * 121.36109 * 359.50682 * 8 6 5 23 23 O 1.21229 * 119.66910 * 180.49319 * 22 8 6 24 24 H 1.09002 * 109.46906 * 180.09046 * 1 2 3 25 25 H 1.09001 * 109.47061 * 300.08575 * 1 2 3 26 26 H 1.08993 * 109.47288 * 60.08923 * 1 2 3 27 27 H 1.00899 * 111.00707 * 53.41732 * 4 2 1 28 28 H 1.09002 * 109.50599 * 183.10867 * 5 4 2 29 29 H 1.09000 * 109.50805 * 62.97217 * 5 4 2 30 30 H 1.09000 * 109.47082 * 210.00239 * 9 8 6 31 31 H 1.09005 * 109.47623 * 330.00547 * 9 8 6 32 32 H 0.97009 * 120.00034 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.46935 * 299.99712 * 13 12 10 34 34 H 1.09002 * 109.47622 * 59.99690 * 13 12 10 35 35 H 0.97000 * 119.99923 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 7 2.0218 -0.6959 1.1987 5 6 3.4906 -0.7710 1.1804 6 6 3.9368 -1.4602 -0.0829 7 8 4.9749 -2.0861 -0.0904 8 7 3.1949 -1.3882 -1.2018 9 6 3.6618 -2.0607 -2.4166 10 6 3.1270 -3.4692 -2.4481 11 8 2.4245 -3.8715 -1.5451 12 7 3.4292 -4.2819 -3.4799 13 6 2.9088 -5.6510 -3.5109 14 6 3.3893 -6.3429 -4.7606 15 1 4.0189 -5.8155 -5.4618 16 6 3.0250 -7.6493 -5.0086 17 7 3.4447 -8.2533 -6.0988 18 14 1.9365 -8.5619 -3.7954 19 1 0.5111 -8.3568 -4.1580 20 1 2.2546 -10.0118 -3.8385 21 1 2.1784 -8.0425 -2.4254 22 6 2.0331 -0.7120 -1.2287 23 8 1.3842 -0.6745 -2.2520 24 1 -0.3633 -1.0277 0.0016 25 1 -0.3633 0.5152 0.8892 26 1 -0.3633 0.5124 -0.8907 27 1 1.6137 -1.6154 1.2761 28 1 3.8369 -1.3366 2.0454 29 1 3.9070 0.2358 1.2124 30 1 3.3064 -1.5173 -3.2921 31 1 4.7516 -2.0857 -2.4221 32 1 3.9908 -3.9600 -4.2025 33 1 3.2635 -6.1944 -2.6351 34 1 1.8191 -5.6258 -3.5061 35 1 3.1887 -9.1725 -6.2732 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097300007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:49 Heat of formation + Delta-G solvation = -92.817236 kcal Electronic energy + Delta-G solvation = -20915.299143 eV Core-core repulsion = 17527.885689 eV Total energy + Delta-G solvation = -3387.413454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.99113 -39.07089 -38.87018 -36.75031 -35.20022 -34.33113 -32.42156 -31.45851 -29.50770 -27.40387 -26.47782 -24.35282 -22.94695 -22.09999 -20.29916 -19.25713 -18.12725 -17.70689 -17.28471 -16.53859 -16.01063 -15.66151 -15.31976 -15.20530 -14.83944 -14.71504 -14.44498 -13.95430 -13.62057 -13.03096 -12.82753 -12.57775 -12.46263 -12.38244 -11.98819 -11.92287 -11.75597 -11.70217 -11.06638 -10.79654 -10.37857 -10.35644 -10.00017 -9.52776 -9.21934 -9.13820 -8.81224 -8.25258 -6.23745 -4.26340 1.33180 2.16591 2.48840 3.04794 3.24985 3.31403 3.39652 3.44684 3.54451 3.89922 4.31268 4.40079 4.47716 4.59839 4.78753 5.03460 5.08914 5.11830 5.17506 5.25604 5.36583 5.39647 5.47295 5.82912 5.99496 6.50803 6.73568 6.73838 7.01984 7.11265 7.23280 7.33137 7.51653 8.05221 8.43060 8.68070 8.80591 9.35721 10.88182 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028756 B = 0.004565 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.486998 B = 6131.546998 C = 6318.937644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.071 3.929 3 H 0.126 0.874 4 N -0.662 5.662 5 C 0.043 3.957 6 C 0.487 3.513 7 O -0.491 6.491 8 N -0.550 5.550 9 C 0.070 3.930 10 C 0.495 3.505 11 O -0.555 6.555 12 N -0.698 5.698 13 C 0.222 3.778 14 C -0.545 4.545 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.891 5.891 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.262 1.262 22 C 0.490 3.510 23 O -0.486 6.486 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.361 0.639 28 H 0.129 0.871 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.398 0.602 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 19.568 13.781 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.042 4.042 3 H 0.143 0.857 4 N -0.294 5.294 5 C -0.090 4.090 6 C 0.275 3.725 7 O -0.361 6.361 8 N -0.293 5.293 9 C -0.055 4.055 10 C 0.278 3.722 11 O -0.435 6.435 12 N -0.346 5.346 13 C 0.100 3.900 14 C -0.583 4.583 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.528 5.528 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.186 1.186 22 C 0.277 3.723 23 O -0.356 6.356 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.181 0.819 28 H 0.147 0.853 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.232 0.768 33 H 0.044 0.956 34 H 0.039 0.961 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.079 19.312 14.162 24.038 hybrid contribution 0.015 -1.291 -0.746 1.491 sum -2.064 18.021 13.415 22.561 Atomic orbital electron populations 1.21712 0.90120 1.03870 1.03754 1.22099 0.98898 0.99360 0.83864 0.85658 1.60947 1.05030 1.26168 1.37274 1.22602 0.88799 1.03263 0.94292 1.22425 0.84044 0.80425 0.85626 1.90765 1.23104 1.38227 1.84018 1.46597 1.22174 1.47676 1.12861 1.21638 1.02501 0.92918 0.88438 1.20492 0.81500 0.87026 0.83145 1.90628 1.39026 1.76351 1.37449 1.46088 1.51196 1.14920 1.22437 1.19523 0.94536 0.77770 0.98177 1.21071 1.33622 0.98278 1.05283 0.90134 1.24781 0.95475 0.97022 0.95242 1.69876 1.44713 1.12928 1.25289 0.86815 0.81238 0.79208 0.82423 1.19803 1.20777 1.18627 1.22383 0.79491 0.78087 0.92330 1.90739 1.53934 1.57603 1.33282 0.91686 0.90114 0.90206 0.81884 0.85343 0.86084 0.86056 0.86054 0.76773 0.95635 0.96103 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.04 37.16 0.34 -0.73 16 2 C 0.07 0.58 3.29 -68.79 -0.23 0.36 16 3 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 4 N -0.66 -5.05 6.63 -109.01 -0.72 -5.78 16 5 C 0.04 0.32 6.71 -4.90 -0.03 0.29 16 6 C 0.49 6.12 7.60 -11.15 -0.08 6.04 16 7 O -0.49 -7.88 16.56 5.60 0.09 -7.78 16 8 N -0.55 -7.51 2.03 -116.85 -0.24 -7.75 16 9 C 0.07 1.06 5.51 -5.20 -0.03 1.03 16 10 C 0.49 9.96 7.89 -10.99 -0.09 9.88 16 11 O -0.56 -13.00 16.43 5.56 0.09 -12.91 16 12 N -0.70 -14.73 5.55 -61.47 -0.34 -15.07 16 13 C 0.22 5.63 4.50 -5.19 -0.02 5.61 16 14 C -0.54 -15.22 9.83 -34.44 -0.34 -15.56 16 15 H 0.08 2.33 7.84 -52.49 -0.41 1.92 16 16 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 17 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 18 Si 0.88 21.80 27.47 -169.99 -4.67 17.14 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.26 -6.51 6.54 56.52 0.37 -6.14 16 22 C 0.49 6.22 7.29 -11.15 -0.08 6.14 16 23 O -0.49 -7.69 15.64 5.60 0.09 -7.60 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.65 7.84 -51.93 -0.41 0.25 16 27 H 0.36 3.13 8.78 -39.29 -0.35 2.79 16 28 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.12 1.63 7.36 -51.93 -0.38 1.24 16 31 H 0.12 1.63 7.36 -51.93 -0.38 1.25 16 32 H 0.40 7.30 8.32 -40.82 -0.34 6.96 16 33 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 34 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 303.44 15.07 4.57 4.57 Total: -1.00 -36.32 303.44 -5.33 -41.65 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.32 Total: 4.27 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: -0.66 Total: 15.21 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.53 Total: -54.54 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: 0.27 Total: -28.30 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -36.32 -5.33 -41.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097300007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.168 kcal (2) G-P(sol) polarization free energy of solvation -36.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds