Wall clock time and date at job start Mon Mar 30 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.50885 * 2 1 4 4 N 1.47074 * 109.53476 * 120.13691 * 2 1 3 5 5 C 1.47078 * 110.35947 * 176.91590 * 4 2 1 6 6 C 1.50656 * 109.24517 * 303.04020 * 5 4 2 7 7 O 1.21228 * 119.67074 * 208.85756 * 6 5 4 8 8 N 1.34448 * 120.65530 * 28.83559 * 6 5 4 9 9 C 1.46496 * 119.31779 * 179.52294 * 8 6 5 10 10 C 1.50696 * 109.46939 * 90.00249 * 9 8 6 11 11 O 1.21280 * 120.00215 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00197 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00289 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47338 * 179.97438 * 13 12 10 15 15 H 1.07997 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99803 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99476 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00240 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46562 * 90.00464 * 18 16 14 20 20 H 1.48498 * 109.46938 * 210.00106 * 18 16 14 21 21 H 1.48496 * 109.47424 * 330.00443 * 18 16 14 22 22 C 1.34451 * 121.36109 * 359.50682 * 8 6 5 23 23 O 1.21229 * 119.66910 * 180.49319 * 22 8 6 24 24 H 1.09002 * 109.46906 * 180.09046 * 1 2 3 25 25 H 1.09001 * 109.47061 * 300.08575 * 1 2 3 26 26 H 1.08993 * 109.47288 * 60.08923 * 1 2 3 27 27 H 1.00899 * 111.00707 * 53.41732 * 4 2 1 28 28 H 1.09002 * 109.50599 * 183.10867 * 5 4 2 29 29 H 1.09000 * 109.50805 * 62.97217 * 5 4 2 30 30 H 1.09000 * 109.47082 * 210.00239 * 9 8 6 31 31 H 1.09005 * 109.47623 * 330.00547 * 9 8 6 32 32 H 0.97009 * 120.00034 * 359.97438 * 12 10 9 33 33 H 1.09000 * 109.46935 * 299.99712 * 13 12 10 34 34 H 1.09002 * 109.47622 * 59.99690 * 13 12 10 35 35 H 0.97000 * 119.99923 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 7 2.0218 -0.6959 1.1987 5 6 3.4906 -0.7710 1.1804 6 6 3.9368 -1.4602 -0.0829 7 8 4.9749 -2.0861 -0.0904 8 7 3.1949 -1.3882 -1.2018 9 6 3.6618 -2.0607 -2.4166 10 6 3.1270 -3.4692 -2.4481 11 8 2.4245 -3.8715 -1.5451 12 7 3.4292 -4.2819 -3.4799 13 6 2.9088 -5.6510 -3.5109 14 6 3.3893 -6.3429 -4.7606 15 1 4.0189 -5.8155 -5.4618 16 6 3.0250 -7.6493 -5.0086 17 7 3.4447 -8.2533 -6.0988 18 14 1.9365 -8.5619 -3.7954 19 1 0.5111 -8.3568 -4.1580 20 1 2.2546 -10.0118 -3.8385 21 1 2.1784 -8.0425 -2.4254 22 6 2.0331 -0.7120 -1.2287 23 8 1.3842 -0.6745 -2.2520 24 1 -0.3633 -1.0277 0.0016 25 1 -0.3633 0.5152 0.8892 26 1 -0.3633 0.5124 -0.8907 27 1 1.6137 -1.6154 1.2761 28 1 3.8369 -1.3366 2.0454 29 1 3.9070 0.2358 1.2124 30 1 3.3064 -1.5173 -3.2921 31 1 4.7516 -2.0857 -2.4221 32 1 3.9908 -3.9600 -4.2025 33 1 3.2635 -6.1944 -2.6351 34 1 1.8191 -5.6258 -3.5061 35 1 3.1887 -9.1725 -6.2732 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097300007.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:49 Heat of formation + Delta-G solvation = -124.039303 kcal Electronic energy + Delta-G solvation = -20916.653033 eV Core-core repulsion = 17527.885689 eV Total energy + Delta-G solvation = -3388.767344 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.98990 -40.50782 -40.08818 -37.56412 -36.49343 -36.05342 -34.52771 -32.15526 -31.07756 -29.06290 -27.23119 -25.34388 -24.23653 -23.57687 -21.92943 -20.25756 -19.37720 -19.03273 -18.43106 -18.22034 -17.17606 -16.84227 -16.54529 -16.50801 -16.33566 -15.87361 -15.66465 -15.34273 -14.83153 -14.59391 -14.49160 -14.37043 -13.42244 -13.25373 -13.17801 -13.02388 -12.75987 -12.71512 -12.54961 -12.47460 -12.00497 -11.76835 -11.66824 -11.39219 -10.98647 -10.72210 -10.12507 -9.92259 -8.46222 -6.54164 0.37403 1.16828 1.27106 1.29361 1.41192 1.44897 1.54127 2.22050 2.36384 2.65374 2.88361 2.88536 3.62376 3.65043 3.80890 3.91134 4.07331 4.11350 4.17702 4.26041 4.61032 4.65313 4.80541 4.88897 4.90063 5.15531 5.21796 5.32925 5.35904 5.79393 5.81161 5.98913 6.28857 6.44237 6.52451 6.64378 7.03504 7.19021 8.68559 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028756 B = 0.004565 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.486998 B = 6131.546998 C = 6318.937644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.079 3.921 3 H 0.164 0.836 4 N -0.647 5.647 5 C 0.052 3.948 6 C 0.484 3.516 7 O -0.532 6.532 8 N -0.558 5.558 9 C 0.077 3.923 10 C 0.491 3.509 11 O -0.590 6.590 12 N -0.699 5.699 13 C 0.235 3.765 14 C -0.551 4.551 15 H 0.061 0.939 16 C 0.029 3.971 17 N -0.928 5.928 18 Si 0.938 3.062 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.264 1.264 22 C 0.486 3.514 23 O -0.524 6.524 24 H 0.043 0.957 25 H 0.107 0.893 26 H 0.074 0.926 27 H 0.355 0.645 28 H 0.143 0.857 29 H 0.161 0.839 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.411 0.589 33 H 0.012 0.988 34 H 0.010 0.990 35 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.200 21.330 15.826 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.033 4.033 3 H 0.181 0.819 4 N -0.278 5.278 5 C -0.080 4.080 6 C 0.274 3.726 7 O -0.405 6.405 8 N -0.301 5.301 9 C -0.049 4.049 10 C 0.277 3.723 11 O -0.472 6.472 12 N -0.349 5.349 13 C 0.111 3.889 14 C -0.588 4.588 15 H 0.079 0.921 16 C -0.172 4.172 17 N -0.566 5.566 18 Si 0.761 3.239 19 H -0.189 1.189 20 H -0.193 1.193 21 H -0.189 1.189 22 C 0.275 3.725 23 O -0.396 6.396 24 H 0.062 0.938 25 H 0.126 0.874 26 H 0.092 0.908 27 H 0.174 0.826 28 H 0.161 0.839 29 H 0.178 0.822 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.247 0.753 33 H 0.029 0.971 34 H 0.028 0.972 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.523 21.117 16.218 26.745 hybrid contribution 0.182 -1.795 -1.409 2.289 sum -2.341 19.322 14.809 24.456 Atomic orbital electron populations 1.21722 0.89829 1.02841 1.04793 1.22341 0.98995 1.00434 0.81568 0.81883 1.61040 1.05020 1.25664 1.36098 1.22870 0.88477 1.04912 0.91691 1.23570 0.83129 0.79560 0.86351 1.90749 1.24985 1.40184 1.84608 1.46928 1.22902 1.47451 1.12784 1.21551 1.03250 0.89643 0.90442 1.21374 0.80484 0.88655 0.81829 1.90596 1.40509 1.77490 1.38559 1.45948 1.51602 1.13728 1.23610 1.19110 0.93774 0.79785 0.96219 1.21250 1.33211 0.98611 1.05773 0.92089 1.25581 0.96771 0.97960 0.96866 1.69971 1.46046 1.13654 1.26940 0.85858 0.79716 0.78478 0.79834 1.18873 1.19335 1.18888 1.23460 0.78464 0.77237 0.93305 1.90722 1.54809 1.59026 1.35065 0.93775 0.87428 0.90755 0.82606 0.83906 0.82182 0.84429 0.84420 0.75282 0.97054 0.97167 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.04 71.98 0.65 -1.14 16 2 C 0.08 1.06 3.29 44.12 0.15 1.21 16 3 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 4 N -0.65 -7.73 6.63 -498.79 -3.31 -11.04 16 5 C 0.05 0.60 6.71 85.51 0.57 1.18 16 6 C 0.48 11.26 7.60 87.69 0.67 11.93 16 7 O -0.53 -16.56 16.56 -2.87 -0.05 -16.61 16 8 N -0.56 -14.49 2.03 -760.78 -1.55 -16.04 16 9 C 0.08 2.25 5.51 85.63 0.47 2.72 16 10 C 0.49 19.81 7.89 87.66 0.69 20.51 16 11 O -0.59 -27.87 16.43 -3.03 -0.05 -27.92 16 12 N -0.70 -29.83 5.55 -466.78 -2.59 -32.41 16 13 C 0.23 12.07 4.50 85.64 0.39 12.46 16 14 C -0.55 -31.32 9.83 25.60 0.25 -31.07 16 15 H 0.06 3.62 7.84 -2.91 -0.02 3.60 16 16 C 0.03 1.68 5.47 84.65 0.46 2.14 16 17 N -0.93 -56.15 13.96 21.45 0.30 -55.85 16 18 Si 0.94 45.07 27.47 68.60 1.88 46.96 16 19 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.26 -12.73 6.54 99.48 0.65 -12.08 16 22 C 0.49 11.58 7.29 87.69 0.64 12.22 16 23 O -0.52 -16.26 15.64 -2.87 -0.04 -16.30 16 24 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 1.09 7.84 -2.39 -0.02 1.07 16 27 H 0.35 5.35 8.78 -89.69 -0.79 4.56 16 28 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.14 3.58 7.36 -2.39 -0.02 3.56 16 31 H 0.14 3.59 7.36 -2.38 -0.02 3.57 16 32 H 0.41 15.24 8.32 -92.70 -0.77 14.46 16 33 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 34 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -80.07 303.44 -0.94 -81.01 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -0.47 Total: 16.06 kcal Atomic # 6 Polarization: 27.22 SS G_CDS: 4.94 Total: 32.15 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -7.15 Total: -115.35 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -0.14 Total: -60.83 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.96 kcal Total: -80.07 -0.94 -81.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097300007.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.032 kcal (2) G-P(sol) polarization free energy of solvation -80.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds