Wall clock time and date at job start Mon Mar 30 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.51143 * 2 1 4 4 N 1.47069 * 109.50594 * 239.86268 * 2 1 3 5 5 C 1.47075 * 110.36566 * 183.11245 * 4 2 1 6 6 C 1.50649 * 109.34549 * 56.75822 * 5 4 2 7 7 O 1.21229 * 119.66806 * 151.37520 * 6 5 4 8 8 N 1.34445 * 120.65587 * 331.63305 * 6 5 4 9 9 C 1.46509 * 119.31568 * 180.21779 * 8 6 5 10 10 C 1.50698 * 109.47002 * 269.72689 * 9 8 6 11 11 O 1.21293 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.37104 * 119.99773 * 179.72591 * 12 10 9 14 14 H 1.08002 * 119.99671 * 0.27660 * 13 12 10 15 15 C 1.38950 * 120.00030 * 180.27703 * 13 12 10 16 16 N 1.31413 * 119.99930 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99918 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47112 * 89.99702 * 17 15 13 19 19 H 1.48498 * 109.47011 * 209.99970 * 17 15 13 20 20 H 1.48494 * 109.47201 * 329.99943 * 17 15 13 21 21 C 1.34451 * 121.36601 * 359.94087 * 8 6 5 22 22 O 1.21226 * 119.67427 * 179.82582 * 21 8 6 23 23 H 1.08999 * 109.46863 * 299.90893 * 1 2 3 24 24 H 1.08996 * 109.47637 * 59.90820 * 1 2 3 25 25 H 1.08998 * 109.47060 * 179.90736 * 1 2 3 26 26 H 1.08995 * 109.47274 * 180.09431 * 3 2 1 27 27 H 1.09001 * 109.47174 * 300.09783 * 3 2 1 28 28 H 1.09006 * 109.47278 * 60.09014 * 3 2 1 29 29 H 1.00898 * 111.00223 * 306.61464 * 4 2 1 30 30 H 1.08996 * 109.50823 * 176.89278 * 5 4 2 31 31 H 1.09007 * 109.50476 * 297.02705 * 5 4 2 32 32 H 1.09003 * 109.46564 * 149.73117 * 9 8 6 33 33 H 1.08993 * 109.46901 * 29.73452 * 9 8 6 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 35 35 H 0.96999 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 2.0211 -0.6960 -1.1989 5 6 3.4897 -0.7722 -1.1810 6 6 3.9386 -1.4571 0.0835 7 8 4.9789 -2.0794 0.0921 8 7 3.1943 -1.3893 1.2011 9 6 3.6611 -2.0624 2.4158 10 6 3.1252 -3.4706 2.4473 11 8 2.4229 -3.8725 1.5437 12 7 3.4272 -4.2836 3.4789 13 6 2.9351 -5.5628 3.5104 14 1 2.3091 -5.9205 2.7063 15 6 3.2418 -6.3992 4.5768 16 7 2.7697 -7.6252 4.6072 17 14 4.3240 -5.7802 5.9679 18 1 3.4750 -5.1631 7.0184 19 1 5.0820 -6.9174 6.5488 20 1 5.2751 -4.7682 5.4424 21 6 2.0331 -0.7120 1.2286 22 8 1.3849 -0.6736 2.2523 23 1 -0.3633 0.5124 0.8908 24 1 -0.3634 0.5152 -0.8891 25 1 -0.3633 -1.0276 -0.0017 26 1 3.1309 1.4414 -0.0017 27 1 1.6766 1.9567 -0.8891 28 1 1.6793 1.9558 0.8908 29 1 1.6123 -1.6152 -1.2763 30 1 3.8355 -1.3378 -2.0462 31 1 3.9068 0.2344 -1.2130 32 1 3.3062 -1.5190 3.2915 33 1 4.7507 -2.0880 2.4210 34 1 3.9892 -3.9622 4.2013 35 1 2.9840 -8.2091 5.3515 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097317530.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:42 Heat of formation + Delta-G solvation = -85.242755 kcal Electronic energy + Delta-G solvation = -21467.924990 eV Core-core repulsion = 18080.839991 eV Total energy + Delta-G solvation = -3387.084999 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.88088 -38.89852 -38.37341 -36.94894 -35.00738 -33.97007 -32.01177 -31.74105 -28.78327 -27.87870 -26.35864 -24.78494 -23.53498 -22.01261 -19.67236 -18.76546 -18.26752 -17.96672 -16.97347 -16.56389 -15.93319 -15.26371 -15.22717 -14.81486 -14.73849 -14.36358 -14.10870 -13.60013 -13.35617 -12.82709 -12.65358 -12.58984 -12.32972 -12.28598 -12.18388 -11.84489 -11.65366 -11.46298 -11.30313 -11.17714 -10.63474 -10.09634 -10.08038 -9.87724 -9.64576 -8.92113 -8.57362 -8.25277 -6.36059 -3.87973 1.57356 2.44813 2.75670 3.01142 3.05487 3.13401 3.56198 3.68068 3.71170 4.06847 4.45204 4.52094 4.60914 4.68875 4.84798 5.13050 5.23756 5.35577 5.36627 5.44450 5.51925 5.53788 5.56901 5.60324 5.77455 5.82698 6.00441 6.23061 6.72668 7.01032 7.48540 7.50366 7.78173 8.05502 8.50646 8.86837 9.34342 9.69634 10.76585 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030841 B = 0.005314 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.669863 B = 5267.545616 C = 5465.462407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.096 3.904 3 C -0.137 4.137 4 N -0.658 5.658 5 C 0.040 3.960 6 C 0.488 3.512 7 O -0.493 6.493 8 N -0.544 5.544 9 C 0.077 3.923 10 C 0.442 3.558 11 O -0.574 6.574 12 N -0.579 5.579 13 C -0.306 4.306 14 H 0.120 0.880 15 C 0.044 3.956 16 N -0.877 5.877 17 Si 0.879 3.121 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.268 1.268 21 C 0.497 3.503 22 O -0.486 6.486 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.362 0.638 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.372 0.628 35 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 19.289 -8.450 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.001 3.999 3 C -0.195 4.195 4 N -0.291 5.291 5 C -0.092 4.092 6 C 0.275 3.725 7 O -0.363 6.363 8 N -0.286 5.286 9 C -0.048 4.048 10 C 0.227 3.773 11 O -0.458 6.458 12 N -0.217 5.217 13 C -0.435 4.435 14 H 0.137 0.863 15 C -0.159 4.159 16 N -0.516 5.516 17 Si 0.705 3.295 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.194 1.194 21 C 0.284 3.716 22 O -0.356 6.356 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.182 0.818 30 H 0.145 0.855 31 H 0.138 0.862 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.205 0.795 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.538 19.035 -8.795 20.976 hybrid contribution 1.118 -0.654 2.039 2.416 sum 1.656 18.382 -6.756 19.654 Atomic orbital electron populations 1.21740 0.89748 1.03812 1.03602 1.21455 0.98384 0.95511 0.84519 1.21868 1.01297 0.92202 1.04102 1.60961 1.04936 1.25932 1.37265 1.22617 0.89081 1.03097 0.94455 1.22326 0.84156 0.80345 0.85654 1.90743 1.23199 1.38345 1.84053 1.46470 1.21854 1.47255 1.13040 1.21525 1.01627 0.94083 0.87602 1.19713 0.86155 0.86648 0.84809 1.90533 1.41358 1.76013 1.37881 1.42096 1.46048 1.13237 1.20336 1.19421 1.29344 0.85868 1.08855 0.86275 1.25044 0.97716 0.95355 0.97828 1.69619 1.43959 1.06069 1.31971 0.86666 0.80816 0.79232 0.82737 1.19408 1.19945 1.19383 1.22126 0.79595 0.77881 0.91984 1.90708 1.53952 1.57722 1.33212 0.90323 0.90228 0.91606 0.92159 0.89596 0.90836 0.81768 0.85474 0.86249 0.87234 0.87208 0.79479 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 8.32 37.16 0.31 -1.01 16 2 C 0.10 1.04 0.94 -132.69 -0.12 0.92 16 3 C -0.14 -1.08 8.31 37.15 0.31 -0.77 16 4 N -0.66 -6.60 6.41 -102.20 -0.65 -7.25 16 5 C 0.04 0.40 6.30 -4.90 -0.03 0.37 16 6 C 0.49 7.49 7.61 -11.16 -0.08 7.41 16 7 O -0.49 -9.22 16.56 5.60 0.09 -9.13 16 8 N -0.54 -9.13 2.03 -116.84 -0.24 -9.36 16 9 C 0.08 1.44 5.51 -5.19 -0.03 1.41 16 10 C 0.44 10.77 7.84 -10.99 -0.09 10.68 16 11 O -0.57 -16.06 16.01 5.55 0.09 -15.97 16 12 N -0.58 -14.56 5.09 -10.96 -0.06 -14.61 16 13 C -0.31 -8.95 10.16 -14.93 -0.15 -9.11 16 14 H 0.12 3.96 7.39 -52.49 -0.39 3.58 16 15 C 0.04 1.24 5.50 -17.47 -0.10 1.14 16 16 N -0.88 -25.97 13.96 55.50 0.77 -25.19 16 17 Si 0.88 19.80 27.74 -169.99 -4.71 15.09 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 20 H -0.27 -5.54 6.52 56.52 0.37 -5.18 16 21 C 0.50 7.76 6.54 -11.15 -0.07 7.69 16 22 O -0.49 -9.02 15.64 5.60 0.09 -8.94 16 23 H 0.08 0.81 7.84 -51.93 -0.41 0.40 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.44 6.49 -51.93 -0.34 0.10 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.36 4.05 8.78 -39.29 -0.35 3.70 16 30 H 0.13 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.12 0.86 6.48 -51.92 -0.34 0.53 16 32 H 0.11 1.84 7.36 -51.93 -0.38 1.46 16 33 H 0.11 1.86 7.35 -51.93 -0.38 1.48 16 34 H 0.37 8.20 5.76 -40.82 -0.24 7.97 16 35 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 297.66 15.07 4.49 4.49 Total: -1.00 -36.48 297.66 -4.29 -40.77 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -4.09 Total: 11.40 kcal Atomic # 6 Polarization: 18.78 SS G_CDS: -0.06 Total: 18.72 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.17 Total: -56.43 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: 0.27 Total: -34.03 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.71 Total: 15.09 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.48 -4.29 -40.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097317530.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.477 kcal (2) G-P(sol) polarization free energy of solvation -36.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds