Wall clock time and date at job start Mon Mar 30 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.51143 * 2 1 4 4 N 1.47069 * 109.50594 * 239.86268 * 2 1 3 5 5 C 1.47075 * 110.36566 * 183.11245 * 4 2 1 6 6 C 1.50649 * 109.34549 * 56.75822 * 5 4 2 7 7 O 1.21229 * 119.66806 * 151.37520 * 6 5 4 8 8 N 1.34445 * 120.65587 * 331.63305 * 6 5 4 9 9 C 1.46509 * 119.31568 * 180.21779 * 8 6 5 10 10 C 1.50698 * 109.47002 * 269.72689 * 9 8 6 11 11 O 1.21293 * 120.00006 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.37104 * 119.99773 * 179.72591 * 12 10 9 14 14 H 1.08002 * 119.99671 * 0.27660 * 13 12 10 15 15 C 1.38950 * 120.00030 * 180.27703 * 13 12 10 16 16 N 1.31413 * 119.99930 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99918 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47112 * 89.99702 * 17 15 13 19 19 H 1.48498 * 109.47011 * 209.99970 * 17 15 13 20 20 H 1.48494 * 109.47201 * 329.99943 * 17 15 13 21 21 C 1.34451 * 121.36601 * 359.94087 * 8 6 5 22 22 O 1.21226 * 119.67427 * 179.82582 * 21 8 6 23 23 H 1.08999 * 109.46863 * 299.90893 * 1 2 3 24 24 H 1.08996 * 109.47637 * 59.90820 * 1 2 3 25 25 H 1.08998 * 109.47060 * 179.90736 * 1 2 3 26 26 H 1.08995 * 109.47274 * 180.09431 * 3 2 1 27 27 H 1.09001 * 109.47174 * 300.09783 * 3 2 1 28 28 H 1.09006 * 109.47278 * 60.09014 * 3 2 1 29 29 H 1.00898 * 111.00223 * 306.61464 * 4 2 1 30 30 H 1.08996 * 109.50823 * 176.89278 * 5 4 2 31 31 H 1.09007 * 109.50476 * 297.02705 * 5 4 2 32 32 H 1.09003 * 109.46564 * 149.73117 * 9 8 6 33 33 H 1.08993 * 109.46901 * 29.73452 * 9 8 6 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 35 35 H 0.96999 * 119.99993 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 2.0211 -0.6960 -1.1989 5 6 3.4897 -0.7722 -1.1810 6 6 3.9386 -1.4571 0.0835 7 8 4.9789 -2.0794 0.0921 8 7 3.1943 -1.3893 1.2011 9 6 3.6611 -2.0624 2.4158 10 6 3.1252 -3.4706 2.4473 11 8 2.4229 -3.8725 1.5437 12 7 3.4272 -4.2836 3.4789 13 6 2.9351 -5.5628 3.5104 14 1 2.3091 -5.9205 2.7063 15 6 3.2418 -6.3992 4.5768 16 7 2.7697 -7.6252 4.6072 17 14 4.3240 -5.7802 5.9679 18 1 3.4750 -5.1631 7.0184 19 1 5.0820 -6.9174 6.5488 20 1 5.2751 -4.7682 5.4424 21 6 2.0331 -0.7120 1.2286 22 8 1.3849 -0.6736 2.2523 23 1 -0.3633 0.5124 0.8908 24 1 -0.3634 0.5152 -0.8891 25 1 -0.3633 -1.0276 -0.0017 26 1 3.1309 1.4414 -0.0017 27 1 1.6766 1.9567 -0.8891 28 1 1.6793 1.9558 0.8908 29 1 1.6123 -1.6152 -1.2763 30 1 3.8355 -1.3378 -2.0462 31 1 3.9068 0.2344 -1.2130 32 1 3.3062 -1.5190 3.2915 33 1 4.7507 -2.0880 2.4210 34 1 3.9892 -3.9622 4.2013 35 1 2.9840 -8.2091 5.3515 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097317530.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:41 Heat of formation + Delta-G solvation = -116.685986 kcal Electronic energy + Delta-G solvation = -21469.288471 eV Core-core repulsion = 18080.839991 eV Total energy + Delta-G solvation = -3388.448480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.07683 -40.34122 -40.07952 -38.03317 -36.49650 -35.95668 -33.92754 -32.86773 -30.30097 -28.62421 -27.32838 -26.69358 -24.76827 -23.17742 -21.60437 -20.64228 -19.37312 -19.10567 -18.45498 -18.10128 -17.12193 -16.96827 -16.44328 -16.20198 -15.96077 -15.83497 -15.59211 -15.18715 -14.71123 -14.67984 -14.30293 -13.57855 -13.42535 -13.33301 -13.17009 -12.99511 -12.90749 -12.57317 -12.52713 -12.50899 -12.09585 -12.05304 -11.66350 -11.45701 -11.31925 -10.48251 -10.40306 -9.92421 -8.52898 -6.15692 0.38049 1.21327 1.24575 1.27051 1.37828 1.59080 1.70123 2.13932 2.63087 2.75700 2.83278 3.01855 3.56896 3.72226 3.81345 3.89017 4.01709 4.11002 4.11421 4.25637 4.54932 4.70291 4.76019 4.80111 4.84138 5.19234 5.21719 5.38826 5.39490 5.77391 5.79785 5.83126 6.31752 6.39280 6.57419 6.69655 7.18643 7.69803 8.64187 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030841 B = 0.005314 C = 0.005122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.669863 B = 5267.545616 C = 5465.462407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.101 3.899 3 C -0.133 4.133 4 N -0.641 5.641 5 C 0.049 3.951 6 C 0.482 3.518 7 O -0.533 6.533 8 N -0.554 5.554 9 C 0.084 3.916 10 C 0.437 3.563 11 O -0.619 6.619 12 N -0.578 5.578 13 C -0.336 4.336 14 H 0.056 0.944 15 C -0.008 4.008 16 N -0.925 5.925 17 Si 0.963 3.037 18 H -0.254 1.254 19 H -0.267 1.267 20 H -0.235 1.235 21 C 0.490 3.510 22 O -0.524 6.524 23 H 0.074 0.926 24 H 0.111 0.889 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.354 0.646 30 H 0.145 0.855 31 H 0.160 0.840 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.391 0.609 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 22.472 -8.427 24.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.006 3.994 3 C -0.190 4.190 4 N -0.273 5.273 5 C -0.083 4.083 6 C 0.273 3.727 7 O -0.406 6.406 8 N -0.296 5.296 9 C -0.042 4.042 10 C 0.224 3.776 11 O -0.505 6.505 12 N -0.219 5.219 13 C -0.465 4.465 14 H 0.074 0.926 15 C -0.208 4.208 16 N -0.565 5.565 17 Si 0.782 3.218 18 H -0.178 1.178 19 H -0.191 1.191 20 H -0.158 1.158 21 C 0.280 3.720 22 O -0.396 6.396 23 H 0.093 0.907 24 H 0.129 0.871 25 H 0.060 0.940 26 H 0.089 0.911 27 H 0.131 0.869 28 H 0.093 0.907 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.177 0.823 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.227 0.773 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.030 22.256 -8.804 24.020 hybrid contribution 0.549 -1.707 1.933 2.637 sum 2.579 20.548 -6.871 21.820 Atomic orbital electron populations 1.21775 0.89302 1.02695 1.04958 1.21706 0.98683 0.96830 0.82186 1.21925 1.01989 0.89555 1.05518 1.61068 1.04920 1.25278 1.35987 1.22909 0.88771 1.04804 0.91825 1.23525 0.83271 0.79540 0.86407 1.90722 1.25007 1.40214 1.84619 1.46823 1.22708 1.47075 1.12980 1.21423 1.02591 0.90266 0.89959 1.20868 0.84676 0.88622 0.83481 1.90500 1.43044 1.77536 1.39393 1.41925 1.46524 1.11990 1.21423 1.18992 1.30636 0.88380 1.08443 0.92619 1.26123 0.98912 0.95012 1.00748 1.69783 1.45341 1.07843 1.33489 0.85400 0.78870 0.79659 0.77890 1.17789 1.19149 1.15821 1.23307 0.78541 0.77039 0.93136 1.90682 1.54778 1.59133 1.35016 0.90716 0.87070 0.93990 0.91116 0.86890 0.90733 0.82694 0.83748 0.82288 0.85210 0.85154 0.77324 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.32 71.98 0.60 -1.82 16 2 C 0.10 1.97 0.94 2.73 0.00 1.97 16 3 C -0.13 -1.56 8.31 71.98 0.60 -0.96 16 4 N -0.64 -11.22 6.41 -477.27 -3.06 -14.27 16 5 C 0.05 0.82 6.30 85.51 0.54 1.36 16 6 C 0.48 14.15 7.61 87.69 0.67 14.82 16 7 O -0.53 -19.52 16.56 -2.87 -0.05 -19.57 16 8 N -0.55 -18.13 2.03 -760.78 -1.55 -19.68 16 9 C 0.08 3.06 5.51 85.63 0.47 3.53 16 10 C 0.44 21.80 7.84 87.66 0.69 22.49 16 11 O -0.62 -36.33 16.01 -3.07 -0.05 -36.38 16 12 N -0.58 -29.54 5.09 -306.98 -1.56 -31.10 16 13 C -0.34 -20.58 10.16 84.04 0.85 -19.72 16 14 H 0.06 4.03 7.39 -2.91 -0.02 4.01 16 15 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 16 N -0.93 -56.64 13.96 21.66 0.30 -56.34 16 17 Si 0.96 40.06 27.74 68.60 1.90 41.96 16 18 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 19 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.23 -8.43 6.52 99.48 0.65 -7.78 16 21 C 0.49 14.89 6.54 87.69 0.57 15.47 16 22 O -0.52 -19.45 15.64 -2.86 -0.04 -19.50 16 23 H 0.07 1.46 7.84 -2.39 -0.02 1.44 16 24 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 0.71 6.49 -2.39 -0.02 0.69 16 27 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.35 7.49 8.78 -89.70 -0.79 6.70 16 30 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.16 1.51 6.48 -2.38 -0.02 1.50 16 32 H 0.13 4.21 7.36 -2.39 -0.02 4.20 16 33 H 0.13 4.23 7.35 -2.39 -0.02 4.21 16 34 H 0.39 16.70 5.76 -92.71 -0.53 16.16 16 35 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -86.17 297.66 1.12 -85.04 By element: Atomic # 1 Polarization: 32.92 SS G_CDS: -0.23 Total: 32.68 kcal Atomic # 6 Polarization: 31.69 SS G_CDS: 5.46 Total: 37.15 kcal Atomic # 7 Polarization: -115.53 SS G_CDS: -5.86 Total: -121.39 kcal Atomic # 8 Polarization: -75.30 SS G_CDS: -0.14 Total: -75.44 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.90 Total: 41.96 kcal Total: -86.17 1.12 -85.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097317530.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.644 kcal (2) G-P(sol) polarization free energy of solvation -86.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds